Wall clock time and date at job start Tue Mar 31 2020 17:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42907 * 113.99850 * 2 1 4 4 C 1.50704 * 109.46907 * 179.97438 * 3 2 1 5 5 C 1.38349 * 120.34847 * 269.97743 * 4 3 2 6 6 N 1.31930 * 121.07721 * 180.02562 * 5 4 3 7 7 C 1.31694 * 121.87806 * 359.65904 * 6 5 4 8 8 C 1.39524 * 120.56657 * 0.62872 * 7 6 5 9 9 C 1.47842 * 120.55522 * 179.68225 * 8 7 6 10 10 O 1.21549 * 119.99486 * 179.72049 * 9 8 7 11 11 N 1.34776 * 120.00162 * 359.72489 * 9 8 7 12 12 C 1.46501 * 119.99731 * 179.97438 * 11 9 8 13 13 H 1.08997 * 110.01993 * 34.93363 * 12 11 9 14 14 C 1.53876 * 110.03274 * 273.54605 * 12 11 9 15 15 C 1.54267 * 106.59870 * 240.71671 * 14 12 11 16 16 C 1.54891 * 104.19324 * 336.39035 * 15 14 12 17 17 C 1.54261 * 110.03258 * 156.37734 * 12 11 9 18 18 H 1.09001 * 110.48691 * 24.08270 * 17 12 11 19 19 C 1.52994 * 110.48660 * 261.57285 * 17 12 11 20 20 N 1.46506 * 109.47382 * 175.00024 * 19 17 12 21 21 C 1.36933 * 120.00280 * 180.02562 * 20 19 17 22 22 H 1.07995 * 119.99858 * 359.97438 * 21 20 19 23 23 C 1.38813 * 119.99785 * 179.97438 * 21 20 19 24 24 N 1.31622 * 119.99621 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 120.00151 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47530 * 89.99952 * 25 23 21 27 27 H 1.48502 * 109.46913 * 210.00002 * 25 23 21 28 28 H 1.48501 * 109.47174 * 329.99527 * 25 23 21 29 29 C 1.38356 * 120.34400 * 90.00105 * 4 3 2 30 30 H 1.08998 * 109.47229 * 300.00340 * 1 2 3 31 31 H 1.09001 * 109.46807 * 60.00077 * 1 2 3 32 32 H 1.08994 * 109.46867 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47271 * 59.99929 * 3 2 1 34 34 H 1.08995 * 109.46818 * 299.99285 * 3 2 1 35 35 H 1.07995 * 119.46154 * 0.02562 * 5 4 3 36 36 H 1.08004 * 119.71421 * 180.31310 * 7 6 5 37 37 H 0.96995 * 120.00454 * 359.97438 * 11 9 8 38 38 H 1.08995 * 110.03160 * 359.97438 * 14 12 11 39 39 H 1.08998 * 110.03319 * 121.42949 * 14 12 11 40 40 H 1.09004 * 110.48597 * 95.06674 * 15 14 12 41 41 H 1.08994 * 110.48679 * 217.71200 * 15 14 12 42 42 H 1.09005 * 110.75269 * 279.62515 * 16 15 14 43 43 H 1.08999 * 110.75712 * 156.25949 * 16 15 14 44 44 H 1.09002 * 109.47471 * 294.99772 * 19 17 12 45 45 H 1.08999 * 109.47564 * 54.99923 * 19 17 12 46 46 H 0.96999 * 119.99567 * 359.97438 * 20 19 17 47 47 H 0.97000 * 119.99607 * 180.02562 * 24 23 21 48 48 H 1.07997 * 120.86076 * 359.97438 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 6 4.2090 1.1320 1.1948 6 7 5.5241 1.0283 1.2122 7 6 6.2314 0.9656 0.1031 8 6 5.6047 1.0204 -1.1422 9 6 6.3997 0.9569 -2.3871 10 8 5.8428 1.0004 -3.4666 11 7 7.7418 0.8507 -2.3250 12 6 8.5295 0.7872 -3.5586 13 1 8.0715 1.4111 -4.3262 14 6 8.6239 -0.6681 -4.0494 15 6 10.1227 -1.0333 -4.0598 16 6 10.8454 0.3318 -4.1747 17 6 9.9741 1.2557 -3.2879 18 1 10.2262 1.1261 -2.2354 19 6 10.1496 2.7177 -3.7032 20 7 11.4901 3.1744 -3.3280 21 6 11.8771 4.4592 -3.6009 22 1 11.1943 5.1358 -4.0932 23 6 13.1471 4.8920 -3.2449 24 7 13.5192 6.1269 -3.5077 25 14 14.3279 3.7220 -2.3927 26 1 15.1305 2.9993 -3.4119 27 1 15.2343 4.4934 -1.5046 28 1 13.5575 2.7433 -1.5841 29 6 4.2098 1.1311 -1.1931 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6886 1.8465 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 3.6672 1.1750 2.1281 36 1 7.3064 0.8759 0.1581 37 1 8.1863 0.8163 -1.4635 38 1 8.0841 -1.3272 -3.3695 39 1 8.2126 -0.7503 -5.0555 40 1 10.3996 -1.5347 -3.1324 41 1 10.3562 -1.6620 -4.9190 42 1 10.8506 0.6804 -5.2075 43 1 11.8605 0.2657 -3.7831 44 1 10.0245 2.8064 -4.7824 45 1 9.4026 3.3308 -3.1992 46 1 12.1033 2.5668 -2.8855 47 1 14.4067 6.4292 -3.2592 48 1 3.6916 1.1716 -2.1397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496886533.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:56 Heat of formation + Delta-G solvation = -63.955555 kcal Electronic energy + Delta-G solvation = -27977.315341 eV Core-core repulsion = 24031.232859 eV Total energy + Delta-G solvation = -3946.082482 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.87840 -40.68357 -39.16689 -38.67474 -36.48371 -34.98879 -34.06549 -33.57623 -32.99279 -30.62005 -28.89897 -28.35383 -26.52979 -26.43851 -25.31204 -23.81549 -23.59174 -22.09857 -21.37415 -20.85805 -19.76588 -18.79398 -18.21577 -17.71508 -17.39279 -17.28558 -16.56613 -16.43346 -16.41310 -16.09136 -15.95343 -15.63492 -15.33973 -14.98202 -14.71846 -14.64239 -14.47975 -14.23868 -13.95306 -13.80134 -13.44991 -13.35825 -12.99679 -12.91192 -12.80784 -12.41910 -12.38293 -12.18268 -11.97556 -11.85161 -11.70612 -11.59372 -11.43045 -11.36765 -11.02243 -10.97356 -10.74152 -10.51950 -10.34713 -10.07605 -9.30881 -8.02846 -5.37154 -0.49719 -0.00515 1.38021 1.43316 1.50510 1.69765 1.99280 2.49075 2.57317 3.02392 3.22172 3.28187 3.34433 3.57641 3.63986 3.68933 3.72130 3.81993 3.88485 3.91683 4.01225 4.27846 4.35223 4.45202 4.46784 4.51307 4.52427 4.56510 4.57829 4.60576 4.61862 4.72031 4.87294 4.89620 4.97176 4.98983 5.03676 5.08698 5.15897 5.23598 5.29612 5.40965 5.48601 5.54790 5.74484 6.15230 6.20495 6.39695 6.71386 7.06455 7.07655 7.82047 8.04284 9.18836 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015474 B = 0.002361 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.033062 B =11855.118137 C =12715.239919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.107 3.893 4 C -0.152 4.152 5 C 0.143 3.857 6 N -0.503 5.503 7 C 0.143 3.857 8 C -0.199 4.199 9 C 0.564 3.436 10 O -0.573 6.573 11 N -0.703 5.703 12 C 0.152 3.848 13 H 0.072 0.928 14 C -0.125 4.125 15 C -0.112 4.112 16 C -0.116 4.116 17 C -0.096 4.096 18 H 0.095 0.905 19 C 0.164 3.836 20 N -0.751 5.751 21 C -0.238 4.238 22 H 0.049 0.951 23 C -0.067 4.067 24 N -0.985 5.985 25 Si 0.960 3.040 26 H -0.276 1.276 27 H -0.297 1.297 28 H -0.245 1.245 29 C -0.007 4.007 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.190 0.810 36 H 0.181 0.819 37 H 0.412 0.588 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.019 0.981 45 H 0.014 0.986 46 H 0.369 0.631 47 H 0.258 0.742 48 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.540 -18.820 10.029 31.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C 0.030 3.970 4 C -0.154 4.154 5 C -0.013 4.013 6 N -0.211 5.211 7 C -0.015 4.015 8 C -0.204 4.204 9 C 0.352 3.648 10 O -0.453 6.453 11 N -0.355 5.355 12 C 0.047 3.953 13 H 0.091 0.909 14 C -0.163 4.163 15 C -0.149 4.149 16 C -0.154 4.154 17 C -0.115 4.115 18 H 0.114 0.886 19 C 0.037 3.963 20 N -0.397 5.397 21 C -0.369 4.369 22 H 0.067 0.933 23 C -0.258 4.258 24 N -0.636 5.636 25 Si 0.787 3.213 26 H -0.202 1.202 27 H -0.224 1.224 28 H -0.169 1.169 29 C -0.034 4.034 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.207 0.793 36 H 0.198 0.802 37 H 0.250 0.750 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.037 0.963 45 H 0.032 0.968 46 H 0.203 0.797 47 H 0.067 0.933 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -23.417 -18.777 9.980 31.631 hybrid contribution 0.497 0.535 -0.409 0.837 sum -22.919 -18.242 9.571 30.817 Atomic orbital electron populations 1.22955 0.78967 1.03887 1.01294 1.87925 1.21771 1.27900 1.95714 1.21339 0.87034 0.85324 1.03299 1.20792 0.97210 1.03880 0.93534 1.23423 0.89611 0.89543 0.98735 1.67846 1.08734 1.13614 1.30905 1.23349 1.01366 0.90588 0.86228 1.20934 0.95317 1.09626 0.94559 1.18248 0.82576 0.75656 0.88366 1.90759 1.71700 1.51823 1.31011 1.45994 1.05628 1.73372 1.10488 1.21569 0.89958 0.97577 0.86191 0.90937 1.22483 0.97815 0.94309 1.01734 1.22325 0.93161 0.96288 1.03147 1.22501 0.98679 0.94748 0.99475 1.22360 0.93922 0.93630 1.01582 0.88638 1.20765 0.85567 0.93116 0.96804 1.42582 1.13872 1.10449 1.72797 1.19004 0.97875 0.88738 1.31276 0.93284 1.25600 0.99495 0.98122 1.02602 1.69909 1.20625 1.18327 1.54721 0.85335 0.78750 0.78649 0.78614 1.20187 1.22387 1.16899 1.21759 0.92518 0.89515 0.99571 0.92256 0.93172 0.88829 0.89162 0.91122 0.79335 0.80220 0.74992 0.90789 0.91381 0.90070 0.90265 0.91828 0.91030 0.96256 0.96800 0.79723 0.93317 0.83888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 11.01 113.37 1.25 1.45 16 2 O -0.41 -6.27 10.69 -148.98 -1.59 -7.86 16 3 C 0.11 1.26 6.08 71.24 0.43 1.69 16 4 C -0.15 -2.49 5.52 -19.81 -0.11 -2.60 16 5 C 0.14 2.26 10.85 84.70 0.92 3.18 16 6 N -0.50 -9.78 10.35 -194.75 -2.01 -11.80 16 7 C 0.14 2.68 10.71 85.02 0.91 3.59 16 8 C -0.20 -4.33 5.89 -19.99 -0.12 -4.44 16 9 C 0.56 14.54 7.77 86.79 0.67 15.21 16 10 O -0.57 -18.89 16.10 -3.87 -0.06 -18.96 16 11 N -0.70 -15.44 4.95 -441.98 -2.19 -17.62 16 12 C 0.15 3.75 2.79 45.71 0.13 3.88 16 13 H 0.07 2.18 7.30 -2.39 -0.02 2.16 16 14 C -0.12 -2.57 6.59 31.32 0.21 -2.36 16 15 C -0.11 -2.03 6.83 31.67 0.22 -1.82 16 16 C -0.12 -2.82 6.19 31.89 0.20 -2.62 16 17 C -0.10 -2.56 2.58 -9.72 -0.03 -2.58 16 18 H 0.10 2.29 7.73 -2.39 -0.02 2.27 16 19 C 0.16 6.21 5.54 86.38 0.48 6.69 16 20 N -0.75 -34.54 5.30 -343.45 -1.82 -36.36 16 21 C -0.24 -13.76 10.47 84.03 0.88 -12.88 16 22 H 0.05 3.16 8.06 -2.91 -0.02 3.14 16 23 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 24 N -0.99 -63.78 13.97 21.65 0.30 -63.48 16 25 Si 0.96 44.73 27.73 68.60 1.90 46.63 16 26 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 27 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 28 H -0.24 -9.97 6.52 99.48 0.65 -9.32 16 29 C -0.01 -0.15 9.39 22.73 0.21 0.07 16 30 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.09 0.61 8.09 -2.39 -0.02 0.59 16 34 H 0.07 0.73 8.09 -2.39 -0.02 0.71 16 35 H 0.19 1.76 8.06 -2.91 -0.02 1.73 16 36 H 0.18 2.43 6.42 -2.91 -0.02 2.41 16 37 H 0.41 6.81 6.41 -92.71 -0.59 6.22 16 38 H 0.07 1.44 7.92 -2.39 -0.02 1.42 16 39 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 41 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.06 1.70 7.97 -2.38 -0.02 1.68 16 43 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.02 0.78 8.02 -2.39 -0.02 0.76 16 45 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.37 15.70 5.50 -92.71 -0.51 15.19 16 47 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 48 H 0.14 3.00 7.74 -2.91 -0.02 2.98 16 Total: -1.00 -78.23 394.28 1.06 -77.17 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: -0.19 Total: 29.32 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: 6.72 Total: 2.95 kcal Atomic # 7 Polarization: -123.54 SS G_CDS: -5.72 Total: -129.26 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -1.65 Total: -26.81 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.90 Total: 46.63 kcal Total: -78.23 1.06 -77.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496886533.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.213 kcal (2) G-P(sol) polarization free energy of solvation -78.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds