Wall clock time and date at job start Tue Mar 31 2020 17:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 114.00171 * 2 1 4 4 C 1.50700 * 109.47334 * 179.97438 * 3 2 1 5 5 C 1.38356 * 120.34837 * 269.98273 * 4 3 2 6 6 N 1.31929 * 121.07535 * 179.97438 * 5 4 3 7 7 C 1.31690 * 121.88411 * 359.76686 * 6 5 4 8 8 C 1.39519 * 120.56536 * 0.49407 * 7 6 5 9 9 C 1.47839 * 120.56150 * 179.77399 * 8 7 6 10 10 O 1.21551 * 120.00249 * 179.71778 * 9 8 7 11 11 N 1.34772 * 119.99944 * 359.72112 * 9 8 7 12 12 C 1.46501 * 120.00458 * 179.97438 * 11 9 8 13 13 H 1.09002 * 110.01145 * 326.39298 * 12 11 9 14 14 C 1.53878 * 110.03231 * 87.82959 * 12 11 9 15 15 C 1.54265 * 106.59441 * 119.28802 * 14 12 11 16 16 C 1.54880 * 104.19918 * 23.61137 * 15 14 12 17 17 C 1.54265 * 110.03640 * 205.00064 * 12 11 9 18 18 H 1.08999 * 110.48173 * 335.91796 * 17 12 11 19 19 C 1.53000 * 110.48472 * 98.42356 * 17 12 11 20 20 N 1.46499 * 109.46840 * 184.99896 * 19 17 12 21 21 C 1.36936 * 120.00002 * 180.02562 * 20 19 17 22 22 H 1.08004 * 120.00140 * 0.02562 * 21 20 19 23 23 C 1.38811 * 120.00367 * 180.02562 * 21 20 19 24 24 N 1.31619 * 119.99972 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00444 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46864 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47259 * 119.99588 * 25 23 21 28 28 H 1.48495 * 109.47205 * 239.99955 * 25 23 21 29 29 C 1.38352 * 120.34654 * 89.99701 * 4 3 2 30 30 H 1.08999 * 109.46715 * 60.00570 * 1 2 3 31 31 H 1.09004 * 109.47101 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47058 * 300.00314 * 1 2 3 33 33 H 1.09003 * 109.47113 * 59.99993 * 3 2 1 34 34 H 1.08998 * 109.47078 * 300.00059 * 3 2 1 35 35 H 1.07997 * 119.45966 * 0.02562 * 5 4 3 36 36 H 1.07992 * 119.71893 * 180.24740 * 7 6 5 37 37 H 0.97004 * 119.99871 * 359.97438 * 11 9 8 38 38 H 1.08992 * 110.03135 * 238.57652 * 14 12 11 39 39 H 1.09004 * 110.02840 * 359.95338 * 14 12 11 40 40 H 1.09000 * 110.48350 * 142.28969 * 15 14 12 41 41 H 1.09002 * 110.48364 * 264.79860 * 15 14 12 42 42 H 1.09002 * 110.76069 * 203.74339 * 16 15 14 43 43 H 1.09006 * 110.75869 * 80.37125 * 16 15 14 44 44 H 1.09002 * 109.47398 * 305.00222 * 19 17 12 45 45 H 1.09001 * 109.47194 * 65.00403 * 19 17 12 46 46 H 0.97000 * 120.00420 * 0.02562 * 20 19 17 47 47 H 0.96996 * 120.00586 * 180.02562 * 24 23 21 48 48 H 1.08004 * 120.86005 * 359.96072 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.2090 1.1318 1.1949 6 7 5.5240 1.0272 1.2122 7 6 6.2316 0.9655 0.1032 8 6 5.6049 1.0199 -1.1421 9 6 6.3997 0.9557 -2.3870 10 8 5.8428 0.9988 -3.4666 11 7 7.7418 0.8494 -2.3249 12 6 8.5295 0.7852 -3.5585 13 1 7.9691 0.2599 -4.3320 14 6 8.8811 2.2058 -4.0339 15 6 10.4209 2.2993 -4.0417 16 6 10.8901 0.8290 -4.1718 17 6 9.8678 0.0650 -3.2942 18 1 10.1378 0.1365 -2.2406 19 6 9.7815 -1.4005 -3.7251 20 7 11.0193 -2.0917 -3.3560 21 6 11.1728 -3.4216 -3.6439 22 1 10.3816 -3.9609 -4.1435 23 6 12.3454 -4.0768 -3.2937 24 7 13.3100 -3.4196 -2.6854 25 14 12.5552 -5.8908 -3.6871 26 1 11.3356 -6.3937 -4.3689 27 1 13.7303 -6.0717 -4.5767 28 1 12.7661 -6.6492 -2.4280 29 6 4.2099 1.1310 -1.1930 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.6887 1.8464 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 3.6672 1.1747 2.1281 36 1 7.3064 0.8761 0.1582 37 1 8.1863 0.8153 -1.4634 38 1 8.4919 2.3704 -5.0385 39 1 8.4650 2.9430 -3.3472 40 1 10.7631 2.8858 -4.8944 41 1 10.7813 2.7358 -3.1102 42 1 11.9004 0.7097 -3.7805 43 1 10.8344 0.4959 -5.2083 44 1 8.9370 -1.8766 -3.2270 45 1 9.6436 -1.4541 -4.8051 46 1 11.7301 -1.6074 -2.9077 47 1 14.1295 -3.8772 -2.4410 48 1 3.6916 1.1712 -2.1397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496886535.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:00 Heat of formation + Delta-G solvation = -43.097206 kcal Electronic energy + Delta-G solvation = -27925.018492 eV Core-core repulsion = 23979.840496 eV Total energy + Delta-G solvation = -3945.177996 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.99946 -39.66874 -38.21024 -37.83756 -34.53897 -33.85477 -33.28248 -32.17138 -31.39847 -28.61460 -28.04683 -27.58721 -25.97420 -24.92134 -24.13235 -23.02224 -22.11132 -21.07568 -20.10120 -19.72651 -18.04458 -17.35753 -17.16399 -16.87658 -16.72834 -16.28977 -15.85392 -15.50013 -15.20907 -14.81027 -14.58758 -14.41847 -13.81503 -13.68529 -13.58737 -13.47844 -13.22957 -13.16211 -12.88220 -12.84176 -12.34947 -12.11687 -11.90974 -11.78923 -11.36800 -10.96818 -10.85047 -10.78460 -10.49565 -10.41052 -10.33096 -10.29655 -10.22293 -10.17678 -9.96049 -9.71461 -9.66887 -9.51991 -9.03017 -8.86138 -6.90389 -5.75585 -3.03713 0.30952 0.77567 2.64449 2.99592 3.30523 3.44619 3.50701 3.52708 3.70034 3.95259 4.30141 4.36508 4.49645 4.53966 4.54905 4.65873 4.74374 4.81644 4.82942 4.91619 4.96015 5.02528 5.11399 5.21636 5.26110 5.44782 5.55547 5.61610 5.63964 5.67329 5.75017 5.76567 5.81021 5.90545 6.04261 6.14582 6.15735 6.21002 6.28012 6.51856 6.53501 6.55891 6.63193 6.78327 6.89775 7.39644 7.48696 7.72629 8.08433 8.43553 9.55038 10.12452 10.47554 11.47399 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011458 B = 0.002452 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.095000 B =11415.288238 C =12801.950130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.108 3.892 4 C -0.155 4.155 5 C 0.142 3.858 6 N -0.485 5.485 7 C 0.143 3.857 8 C -0.185 4.185 9 C 0.563 3.437 10 O -0.535 6.535 11 N -0.711 5.711 12 C 0.146 3.854 13 H 0.096 0.904 14 C -0.131 4.131 15 C -0.125 4.125 16 C -0.110 4.110 17 C -0.102 4.102 18 H 0.080 0.920 19 C 0.161 3.839 20 N -0.730 5.730 21 C -0.237 4.237 22 H 0.070 0.930 23 C -0.015 4.015 24 N -0.934 5.934 25 Si 0.906 3.094 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 C 0.004 3.996 30 H 0.043 0.957 31 H 0.088 0.912 32 H 0.043 0.957 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.161 0.839 36 H 0.163 0.837 37 H 0.399 0.601 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.018 0.982 45 H 0.021 0.979 46 H 0.384 0.616 47 H 0.254 0.746 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.501 16.339 6.169 27.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.031 3.969 4 C -0.157 4.157 5 C -0.015 4.015 6 N -0.193 5.193 7 C -0.016 4.016 8 C -0.190 4.190 9 C 0.349 3.651 10 O -0.413 6.413 11 N -0.362 5.362 12 C 0.042 3.958 13 H 0.114 0.886 14 C -0.170 4.170 15 C -0.163 4.163 16 C -0.148 4.148 17 C -0.122 4.122 18 H 0.098 0.902 19 C 0.033 3.967 20 N -0.375 5.375 21 C -0.368 4.368 22 H 0.088 0.912 23 C -0.211 4.211 24 N -0.583 5.583 25 Si 0.737 3.263 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.022 4.022 30 H 0.062 0.938 31 H 0.107 0.893 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.178 0.822 36 H 0.180 0.820 37 H 0.235 0.765 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.035 0.965 45 H 0.039 0.961 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -21.379 15.993 6.118 27.391 hybrid contribution -0.005 -0.707 -0.367 0.796 sum -21.384 15.286 5.752 26.908 Atomic orbital electron populations 1.22790 0.80520 1.03177 1.00120 1.87998 1.19985 1.26985 1.95438 1.21222 0.88536 0.85536 1.01594 1.20566 0.95917 1.04967 0.94230 1.22915 0.89949 0.91081 0.97568 1.67776 1.07833 1.12816 1.30868 1.23099 1.00508 0.91152 0.86792 1.21063 0.95151 1.07745 0.95085 1.17968 0.82300 0.76606 0.88203 1.90777 1.71011 1.49984 1.29509 1.46110 1.05964 1.73802 1.10328 1.21780 0.91906 0.96020 0.86142 0.88636 1.22542 0.96501 0.96283 1.01643 1.22387 0.94697 0.97679 1.01513 1.22453 0.99017 0.93021 1.00317 1.22444 0.92828 0.96236 1.00659 0.90174 1.20688 0.90512 0.88567 0.96940 1.42324 1.15263 1.08379 1.71487 1.19275 1.00015 0.86119 1.31378 0.91217 1.24726 0.96683 0.98157 1.01496 1.69661 1.06881 1.35366 1.46376 0.86125 0.77467 0.85229 0.77454 1.20575 1.21880 1.21894 1.21632 0.92468 0.89222 0.98920 0.93822 0.89313 0.93850 0.91725 0.91829 0.82161 0.82042 0.76473 0.91243 0.91730 0.91790 0.91801 0.90637 0.90991 0.96460 0.96080 0.78269 0.93610 0.83376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.38 -3.46 10.69 -35.23 -0.38 -3.83 16 3 C 0.11 0.75 6.08 36.01 0.22 0.97 16 4 C -0.15 -1.40 5.52 -104.54 -0.58 -1.98 16 5 C 0.14 1.30 10.85 -17.47 -0.19 1.11 16 6 N -0.49 -5.31 10.35 -12.91 -0.13 -5.44 16 7 C 0.14 1.50 10.71 -17.14 -0.18 1.31 16 8 C -0.19 -2.13 5.89 -104.82 -0.62 -2.74 16 9 C 0.56 7.56 7.78 -12.33 -0.10 7.46 16 10 O -0.54 -8.85 16.08 5.32 0.09 -8.77 16 11 N -0.71 -8.65 4.94 -53.66 -0.26 -8.91 16 12 C 0.15 1.98 2.82 -66.81 -0.19 1.79 16 13 H 0.10 1.48 7.26 -51.93 -0.38 1.11 16 14 C -0.13 -1.56 6.59 -25.61 -0.17 -1.73 16 15 C -0.12 -1.45 6.83 -25.08 -0.17 -1.62 16 16 C -0.11 -1.60 6.19 -24.74 -0.15 -1.75 16 17 C -0.10 -1.57 2.59 -88.96 -0.23 -1.80 16 18 H 0.08 1.21 7.74 -51.93 -0.40 0.81 16 19 C 0.16 3.22 5.54 -4.04 -0.02 3.20 16 20 N -0.73 -18.29 5.49 -59.91 -0.33 -18.62 16 21 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 22 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 23 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 24 N -0.93 -28.18 13.06 55.49 0.72 -27.45 16 25 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 28 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 29 C 0.00 0.04 9.39 -38.87 -0.37 -0.32 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.06 0.31 8.09 -51.93 -0.42 -0.11 16 34 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 35 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.16 1.34 6.42 -52.49 -0.34 1.01 16 37 H 0.40 4.00 6.42 -40.82 -0.26 3.74 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.73 7.92 -51.93 -0.41 0.32 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.07 1.10 7.97 -51.93 -0.41 0.68 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.02 0.44 8.02 -51.93 -0.42 0.02 16 46 H 0.38 9.97 7.64 -40.82 -0.31 9.66 16 47 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 48 H 0.15 1.54 7.74 -52.48 -0.41 1.13 16 LS Contribution 397.39 15.07 5.99 5.99 Total: -1.00 -34.42 397.39 -8.73 -43.15 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -7.53 Total: 8.42 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -1.88 Total: -2.17 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: 0.00 Total: -60.43 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -0.29 Total: -12.60 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.42 -8.73 -43.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496886535.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.057 kcal (2) G-P(sol) polarization free energy of solvation -34.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds