Wall clock time and date at job start Tue Mar 31 2020 17:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 114.00171 * 2 1 4 4 C 1.50700 * 109.47334 * 179.97438 * 3 2 1 5 5 C 1.38356 * 120.34837 * 269.98273 * 4 3 2 6 6 N 1.31929 * 121.07535 * 179.97438 * 5 4 3 7 7 C 1.31690 * 121.88411 * 359.76686 * 6 5 4 8 8 C 1.39519 * 120.56536 * 0.49407 * 7 6 5 9 9 C 1.47839 * 120.56150 * 179.77399 * 8 7 6 10 10 O 1.21551 * 120.00249 * 179.71778 * 9 8 7 11 11 N 1.34772 * 119.99944 * 359.72112 * 9 8 7 12 12 C 1.46501 * 120.00458 * 179.97438 * 11 9 8 13 13 H 1.09002 * 110.01145 * 326.39298 * 12 11 9 14 14 C 1.53878 * 110.03231 * 87.82959 * 12 11 9 15 15 C 1.54265 * 106.59441 * 119.28802 * 14 12 11 16 16 C 1.54880 * 104.19918 * 23.61137 * 15 14 12 17 17 C 1.54265 * 110.03640 * 205.00064 * 12 11 9 18 18 H 1.08999 * 110.48173 * 335.91796 * 17 12 11 19 19 C 1.53000 * 110.48472 * 98.42356 * 17 12 11 20 20 N 1.46499 * 109.46840 * 184.99896 * 19 17 12 21 21 C 1.36936 * 120.00002 * 180.02562 * 20 19 17 22 22 H 1.08004 * 120.00140 * 0.02562 * 21 20 19 23 23 C 1.38811 * 120.00367 * 180.02562 * 21 20 19 24 24 N 1.31619 * 119.99972 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00444 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46864 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47259 * 119.99588 * 25 23 21 28 28 H 1.48495 * 109.47205 * 239.99955 * 25 23 21 29 29 C 1.38352 * 120.34654 * 89.99701 * 4 3 2 30 30 H 1.08999 * 109.46715 * 60.00570 * 1 2 3 31 31 H 1.09004 * 109.47101 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47058 * 300.00314 * 1 2 3 33 33 H 1.09003 * 109.47113 * 59.99993 * 3 2 1 34 34 H 1.08998 * 109.47078 * 300.00059 * 3 2 1 35 35 H 1.07997 * 119.45966 * 0.02562 * 5 4 3 36 36 H 1.07992 * 119.71893 * 180.24740 * 7 6 5 37 37 H 0.97004 * 119.99871 * 359.97438 * 11 9 8 38 38 H 1.08992 * 110.03135 * 238.57652 * 14 12 11 39 39 H 1.09004 * 110.02840 * 359.95338 * 14 12 11 40 40 H 1.09000 * 110.48350 * 142.28969 * 15 14 12 41 41 H 1.09002 * 110.48364 * 264.79860 * 15 14 12 42 42 H 1.09002 * 110.76069 * 203.74339 * 16 15 14 43 43 H 1.09006 * 110.75869 * 80.37125 * 16 15 14 44 44 H 1.09002 * 109.47398 * 305.00222 * 19 17 12 45 45 H 1.09001 * 109.47194 * 65.00403 * 19 17 12 46 46 H 0.97000 * 120.00420 * 0.02562 * 20 19 17 47 47 H 0.96996 * 120.00586 * 180.02562 * 24 23 21 48 48 H 1.08004 * 120.86005 * 359.96072 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.2090 1.1318 1.1949 6 7 5.5240 1.0272 1.2122 7 6 6.2316 0.9655 0.1032 8 6 5.6049 1.0199 -1.1421 9 6 6.3997 0.9557 -2.3870 10 8 5.8428 0.9988 -3.4666 11 7 7.7418 0.8494 -2.3249 12 6 8.5295 0.7852 -3.5585 13 1 7.9691 0.2599 -4.3320 14 6 8.8811 2.2058 -4.0339 15 6 10.4209 2.2993 -4.0417 16 6 10.8901 0.8290 -4.1718 17 6 9.8678 0.0650 -3.2942 18 1 10.1378 0.1365 -2.2406 19 6 9.7815 -1.4005 -3.7251 20 7 11.0193 -2.0917 -3.3560 21 6 11.1728 -3.4216 -3.6439 22 1 10.3816 -3.9609 -4.1435 23 6 12.3454 -4.0768 -3.2937 24 7 13.3100 -3.4196 -2.6854 25 14 12.5552 -5.8908 -3.6871 26 1 11.3356 -6.3937 -4.3689 27 1 13.7303 -6.0717 -4.5767 28 1 12.7661 -6.6492 -2.4280 29 6 4.2099 1.1310 -1.1930 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.6887 1.8464 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 3.6672 1.1747 2.1281 36 1 7.3064 0.8761 0.1582 37 1 8.1863 0.8153 -1.4634 38 1 8.4919 2.3704 -5.0385 39 1 8.4650 2.9430 -3.3472 40 1 10.7631 2.8858 -4.8944 41 1 10.7813 2.7358 -3.1102 42 1 11.9004 0.7097 -3.7805 43 1 10.8344 0.4959 -5.2083 44 1 8.9370 -1.8766 -3.2270 45 1 9.6436 -1.4541 -4.8051 46 1 11.7301 -1.6074 -2.9077 47 1 14.1295 -3.8772 -2.4410 48 1 3.6916 1.1712 -2.1397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496886535.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:59 Heat of formation + Delta-G solvation = -66.837349 kcal Electronic energy + Delta-G solvation = -27926.047942 eV Core-core repulsion = 23979.840496 eV Total energy + Delta-G solvation = -3946.207446 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.87139 -40.66677 -39.13124 -38.67104 -36.34563 -34.97759 -34.06073 -33.32523 -32.98107 -30.22321 -28.88664 -28.34605 -26.52365 -26.42533 -25.38108 -23.89517 -23.71058 -22.07759 -21.27625 -20.84136 -19.35750 -18.70902 -18.20287 -17.68528 -17.40047 -17.27911 -16.61510 -16.49477 -16.32079 -16.08881 -15.80706 -15.63988 -15.20222 -15.07266 -14.70371 -14.68094 -14.45167 -14.23135 -13.95056 -13.49148 -13.35116 -13.17905 -12.97220 -12.89115 -12.79918 -12.48757 -12.37511 -12.14008 -11.96536 -11.88053 -11.63942 -11.59616 -11.42381 -11.35368 -11.01741 -10.94873 -10.73458 -10.51408 -10.33842 -10.06777 -9.00414 -7.96466 -5.24612 -0.49377 -0.00133 1.46498 1.46648 1.56913 1.70252 1.99799 2.54588 2.57716 3.05091 3.22389 3.36642 3.45484 3.59189 3.66979 3.69581 3.73356 3.82598 3.90820 4.00429 4.15655 4.28329 4.40627 4.47007 4.47660 4.52584 4.55137 4.56066 4.59533 4.62119 4.65632 4.73895 4.87902 4.89800 4.98298 5.00207 5.04288 5.09824 5.17696 5.24980 5.33842 5.41571 5.46495 5.50780 5.56680 6.17000 6.26293 6.40200 6.71979 7.06456 7.33326 8.07823 8.33539 9.26849 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011458 B = 0.002452 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.095000 B =11415.288238 C =12801.950130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.107 3.893 4 C -0.152 4.152 5 C 0.143 3.857 6 N -0.503 5.503 7 C 0.142 3.858 8 C -0.199 4.199 9 C 0.564 3.436 10 O -0.573 6.573 11 N -0.703 5.703 12 C 0.153 3.847 13 H 0.074 0.926 14 C -0.123 4.123 15 C -0.112 4.112 16 C -0.111 4.111 17 C -0.092 4.092 18 H 0.086 0.914 19 C 0.161 3.839 20 N -0.738 5.738 21 C -0.246 4.246 22 H 0.069 0.931 23 C -0.072 4.072 24 N -0.965 5.965 25 Si 0.970 3.030 26 H -0.271 1.271 27 H -0.291 1.291 28 H -0.291 1.291 29 C -0.006 4.006 30 H 0.051 0.949 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.190 0.810 36 H 0.179 0.821 37 H 0.411 0.589 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.009 0.991 45 H 0.015 0.985 46 H 0.377 0.623 47 H 0.252 0.748 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.713 17.313 7.160 29.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C 0.030 3.970 4 C -0.154 4.154 5 C -0.013 4.013 6 N -0.211 5.211 7 C -0.016 4.016 8 C -0.204 4.204 9 C 0.352 3.648 10 O -0.453 6.453 11 N -0.355 5.355 12 C 0.048 3.952 13 H 0.092 0.908 14 C -0.162 4.162 15 C -0.149 4.149 16 C -0.149 4.149 17 C -0.111 4.111 18 H 0.105 0.895 19 C 0.035 3.965 20 N -0.381 5.381 21 C -0.378 4.378 22 H 0.087 0.913 23 C -0.264 4.264 24 N -0.616 5.616 25 Si 0.800 3.200 26 H -0.195 1.195 27 H -0.218 1.218 28 H -0.219 1.219 29 C -0.033 4.033 30 H 0.070 0.930 31 H 0.109 0.891 32 H 0.079 0.921 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.207 0.793 36 H 0.195 0.805 37 H 0.249 0.751 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.027 0.973 45 H 0.033 0.967 46 H 0.210 0.790 47 H 0.061 0.939 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -22.614 16.981 7.117 29.162 hybrid contribution 0.268 -1.016 -0.659 1.240 sum -22.346 15.965 6.458 28.213 Atomic orbital electron populations 1.22950 0.78945 1.03790 1.01377 1.87940 1.21822 1.28136 1.95724 1.21356 0.86932 0.85245 1.03439 1.20803 0.97267 1.03861 0.93488 1.23437 0.89573 0.89522 0.98781 1.67842 1.08815 1.13592 1.30881 1.23323 1.01349 0.90590 0.86311 1.20933 0.95392 1.09626 0.94488 1.18248 0.82443 0.75718 0.88403 1.90753 1.71679 1.51906 1.30962 1.46012 1.05729 1.73242 1.10474 1.21577 0.90597 0.96843 0.86214 0.90823 1.22476 0.96811 0.94964 1.01919 1.22319 0.94064 0.95503 1.03024 1.22406 0.98039 0.95212 0.99208 1.22290 0.94418 0.93308 1.01068 0.89528 1.20781 0.88176 0.91225 0.96345 1.42462 1.16566 1.07762 1.71335 1.19606 0.99934 0.87568 1.30670 0.91332 1.25507 0.96607 1.02291 1.02035 1.69797 1.07239 1.36874 1.47669 0.85118 0.77509 0.80337 0.77067 1.19523 1.21794 1.21852 1.21763 0.92402 0.89489 0.99616 0.93023 0.89137 0.92104 0.88981 0.90888 0.79291 0.80457 0.75096 0.91139 0.90562 0.90230 0.90323 0.91938 0.92135 0.97329 0.96689 0.79025 0.93906 0.83790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.48 16 2 O -0.42 -6.86 10.69 -148.98 -1.59 -8.45 16 3 C 0.11 1.27 6.08 71.24 0.43 1.71 16 4 C -0.15 -2.55 5.52 -19.81 -0.11 -2.65 16 5 C 0.14 2.34 10.85 84.71 0.92 3.26 16 6 N -0.50 -10.25 10.35 -194.76 -2.01 -12.27 16 7 C 0.14 2.84 10.71 85.02 0.91 3.75 16 8 C -0.20 -4.51 5.89 -19.99 -0.12 -4.63 16 9 C 0.56 15.16 7.78 86.79 0.67 15.84 16 10 O -0.57 -19.31 16.08 -3.88 -0.06 -19.37 16 11 N -0.70 -16.74 4.94 -441.98 -2.18 -18.92 16 12 C 0.15 4.09 2.82 45.72 0.13 4.22 16 13 H 0.07 2.33 7.26 -2.39 -0.02 2.32 16 14 C -0.12 -2.74 6.59 31.32 0.21 -2.53 16 15 C -0.11 -2.36 6.83 31.67 0.22 -2.14 16 16 C -0.11 -3.16 6.19 31.88 0.20 -2.96 16 17 C -0.09 -2.79 2.59 -9.72 -0.03 -2.81 16 18 H 0.09 2.55 7.74 -2.39 -0.02 2.53 16 19 C 0.16 6.59 5.54 86.38 0.48 7.07 16 20 N -0.74 -37.57 5.49 -343.45 -1.89 -39.45 16 21 C -0.25 -13.99 9.99 84.03 0.84 -13.15 16 22 H 0.07 3.84 7.83 -2.91 -0.02 3.81 16 23 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 24 N -0.97 -58.80 13.06 21.65 0.28 -58.51 16 25 Si 0.97 46.77 29.55 68.60 2.03 48.79 16 26 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 27 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 28 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 29 C -0.01 -0.13 9.39 22.73 0.21 0.08 16 30 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.09 0.58 8.09 -2.39 -0.02 0.56 16 34 H 0.07 0.72 8.09 -2.39 -0.02 0.70 16 35 H 0.19 1.84 8.06 -2.91 -0.02 1.82 16 36 H 0.18 2.73 6.42 -2.91 -0.02 2.71 16 37 H 0.41 7.80 6.42 -92.71 -0.60 7.20 16 38 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.08 1.56 7.92 -2.38 -0.02 1.54 16 40 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.06 1.85 7.97 -2.38 -0.02 1.83 16 44 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 45 H 0.02 0.64 8.02 -2.39 -0.02 0.62 16 46 H 0.38 19.97 7.64 -92.71 -0.71 19.26 16 47 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 48 H 0.14 3.05 7.74 -2.91 -0.02 3.03 16 Total: -1.00 -74.24 397.39 0.93 -73.32 By element: Atomic # 1 Polarization: 32.36 SS G_CDS: -0.33 Total: 32.03 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 6.68 Total: 2.83 kcal Atomic # 7 Polarization: -123.35 SS G_CDS: -5.80 Total: -129.15 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -1.65 Total: -27.82 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.79 kcal Total: -74.24 0.93 -73.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496886535.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.480 kcal (2) G-P(sol) polarization free energy of solvation -74.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds