Wall clock time and date at job start Tue Mar 31 2020 17:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42900 * 113.99510 * 2 1 4 4 C 1.50703 * 109.46887 * 179.97438 * 3 2 1 5 5 C 1.38351 * 120.35255 * 269.97799 * 4 3 2 6 6 N 1.31925 * 121.07921 * 179.97438 * 5 4 3 7 7 C 1.31697 * 121.88115 * 359.77960 * 6 5 4 8 8 C 1.39517 * 120.56532 * 0.48610 * 7 6 5 9 9 C 1.47846 * 120.55949 * 179.77957 * 8 7 6 10 10 O 1.21556 * 119.99841 * 179.72534 * 9 8 7 11 11 N 1.34773 * 119.99886 * 359.72024 * 9 8 7 12 12 C 1.46500 * 120.00002 * 180.02562 * 11 9 8 13 13 H 1.08994 * 110.05612 * 325.03852 * 12 11 9 14 14 C 1.53876 * 110.03082 * 86.45203 * 12 11 9 15 15 C 1.54267 * 106.59870 * 119.28660 * 14 12 11 16 16 C 1.54891 * 104.19324 * 336.39035 * 15 14 12 17 17 C 1.54261 * 110.03182 * 203.61914 * 12 11 9 18 18 H 1.08999 * 110.48469 * 145.64718 * 17 12 11 19 19 C 1.53002 * 110.48913 * 23.13609 * 17 12 11 20 20 N 1.46498 * 109.47340 * 174.99836 * 19 17 12 21 21 C 1.36936 * 120.00105 * 179.97438 * 20 19 17 22 22 H 1.08007 * 119.99789 * 0.02562 * 21 20 19 23 23 C 1.38807 * 120.00105 * 179.97438 * 21 20 19 24 24 N 1.31625 * 119.99821 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00111 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47147 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47678 * 120.00112 * 25 23 21 28 28 H 1.48501 * 109.47396 * 240.00341 * 25 23 21 29 29 C 1.38359 * 120.34589 * 90.00317 * 4 3 2 30 30 H 1.08998 * 109.47010 * 60.00028 * 1 2 3 31 31 H 1.09001 * 109.46348 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47203 * 300.00059 * 1 2 3 33 33 H 1.09008 * 109.47425 * 60.00073 * 3 2 1 34 34 H 1.09000 * 109.47465 * 299.99882 * 3 2 1 35 35 H 1.07997 * 119.45687 * 0.02710 * 5 4 3 36 36 H 1.07999 * 119.71609 * 180.24618 * 7 6 5 37 37 H 0.96999 * 120.00052 * 359.97438 * 11 9 8 38 38 H 1.08995 * 110.03160 * 238.56849 * 14 12 11 39 39 H 1.08998 * 110.03319 * 359.97438 * 14 12 11 40 40 H 1.09004 * 110.48597 * 95.06674 * 15 14 12 41 41 H 1.08994 * 110.48679 * 217.71200 * 15 14 12 42 42 H 1.09005 * 110.75269 * 279.62515 * 16 15 14 43 43 H 1.09004 * 110.91555 * 156.33330 * 16 15 14 44 44 H 1.09005 * 109.46735 * 294.99957 * 19 17 12 45 45 H 1.09005 * 109.46685 * 54.99810 * 19 17 12 46 46 H 0.97001 * 119.99869 * 0.02562 * 20 19 17 47 47 H 0.96997 * 119.99398 * 179.97438 * 24 23 21 48 48 H 1.08007 * 120.85622 * 359.95137 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.2090 1.1321 1.1948 6 7 5.5240 1.0275 1.2121 7 6 6.2315 0.9660 0.1030 8 6 5.6048 1.0204 -1.1423 9 6 6.3996 0.9563 -2.3873 10 8 5.8426 0.9995 -3.4668 11 7 7.7417 0.8501 -2.3252 12 6 8.5293 0.7871 -3.5588 13 1 7.9796 0.2417 -4.3259 14 6 8.8515 2.2088 -4.0516 15 6 10.3891 2.3336 -4.0624 16 6 10.8636 1.2704 -3.0409 17 6 9.8823 0.0976 -3.2873 18 1 10.1942 -0.4850 -4.1540 19 6 9.7891 -0.7956 -2.0486 20 7 11.0457 -1.5298 -1.8802 21 6 11.1969 -2.3967 -0.8311 22 1 10.3895 -2.5396 -0.1280 23 6 12.3872 -3.0927 -0.6719 24 7 13.3709 -2.9189 -1.5291 25 14 12.5932 -4.2758 0.7588 26 1 11.3503 -4.2913 1.5713 27 1 12.8605 -5.6407 0.2381 28 1 13.7324 -3.8367 1.6043 29 6 4.2098 1.1313 -1.1931 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.6885 1.8465 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.6672 1.1750 2.1281 36 1 7.3064 0.8767 0.1580 37 1 8.1862 0.8160 -1.4637 38 1 8.4581 2.3533 -5.0578 39 1 8.4214 2.9455 -3.3731 40 1 10.7829 2.1120 -5.0544 41 1 10.6931 3.3307 -3.7442 42 1 10.7696 1.6451 -2.0215 43 1 11.8898 0.9650 -3.2454 44 1 9.6081 -0.1785 -1.1685 45 1 8.9688 -1.5028 -2.1716 46 1 11.7708 -1.4012 -2.5115 47 1 14.2028 -3.4050 -1.4175 48 1 3.6915 1.1714 -2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496886539.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:05 Heat of formation + Delta-G solvation = -60.582962 kcal Electronic energy + Delta-G solvation = -28340.630837 eV Core-core repulsion = 24394.694601 eV Total energy + Delta-G solvation = -3945.936235 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.91128 -40.75241 -39.12116 -38.66384 -36.26762 -34.89351 -34.05635 -33.32050 -32.97591 -30.21175 -28.91629 -28.34854 -26.50947 -26.39110 -25.39807 -24.08270 -23.78049 -21.85646 -21.41001 -20.58521 -19.40067 -18.85906 -18.11404 -17.66802 -17.38630 -17.02884 -16.64603 -16.48502 -16.29716 -16.11090 -15.92364 -15.61269 -15.23830 -15.16203 -14.77058 -14.68357 -14.44208 -14.23766 -13.98121 -13.58214 -13.34593 -13.14592 -12.93835 -12.86448 -12.68722 -12.36767 -12.29501 -12.13899 -11.97350 -11.83389 -11.66131 -11.55486 -11.46237 -11.34635 -11.01784 -10.92302 -10.72700 -10.50835 -10.34024 -10.07103 -8.99037 -7.94863 -5.23042 -0.49572 -0.00119 1.47739 1.48315 1.58136 1.70640 2.01191 2.55814 2.57586 3.05151 3.21147 3.38572 3.45758 3.60082 3.67748 3.69219 3.73272 3.82546 3.87590 4.01176 4.18446 4.27090 4.38969 4.45526 4.51267 4.53576 4.54902 4.56743 4.58123 4.62808 4.67401 4.78268 4.84090 4.87857 4.90464 5.02452 5.03885 5.11029 5.22753 5.25489 5.36465 5.41219 5.47139 5.52134 5.53015 6.17887 6.27465 6.38915 6.72217 7.04865 7.34727 8.09832 8.33301 9.28701 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010101 B = 0.002925 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2771.267986 B = 9570.235435 C =11627.182861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.108 3.892 4 C -0.151 4.151 5 C 0.142 3.858 6 N -0.505 5.505 7 C 0.139 3.861 8 C -0.199 4.199 9 C 0.565 3.435 10 O -0.570 6.570 11 N -0.705 5.705 12 C 0.154 3.846 13 H 0.079 0.921 14 C -0.123 4.123 15 C -0.114 4.114 16 C -0.111 4.111 17 C -0.100 4.100 18 H 0.081 0.919 19 C 0.165 3.835 20 N -0.740 5.740 21 C -0.242 4.242 22 H 0.074 0.926 23 C -0.074 4.074 24 N -0.967 5.967 25 Si 0.969 3.031 26 H -0.267 1.267 27 H -0.295 1.295 28 H -0.292 1.292 29 C -0.004 4.004 30 H 0.052 0.948 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.190 0.810 36 H 0.169 0.831 37 H 0.408 0.592 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.029 0.971 45 H 0.010 0.990 46 H 0.375 0.625 47 H 0.251 0.749 48 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.315 15.070 1.409 27.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C 0.031 3.969 4 C -0.153 4.153 5 C -0.014 4.014 6 N -0.212 5.212 7 C -0.018 4.018 8 C -0.204 4.204 9 C 0.353 3.647 10 O -0.450 6.450 11 N -0.358 5.358 12 C 0.049 3.951 13 H 0.097 0.903 14 C -0.161 4.161 15 C -0.151 4.151 16 C -0.148 4.148 17 C -0.119 4.119 18 H 0.099 0.901 19 C 0.038 3.962 20 N -0.383 5.383 21 C -0.374 4.374 22 H 0.092 0.908 23 C -0.266 4.266 24 N -0.618 5.618 25 Si 0.799 3.201 26 H -0.192 1.192 27 H -0.223 1.223 28 H -0.219 1.219 29 C -0.031 4.031 30 H 0.071 0.929 31 H 0.109 0.891 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.093 0.907 35 H 0.207 0.793 36 H 0.186 0.814 37 H 0.247 0.753 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.046 0.954 45 H 0.028 0.972 46 H 0.208 0.792 47 H 0.060 0.940 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -23.213 14.818 1.605 27.586 hybrid contribution 0.446 -0.835 -0.113 0.954 sum -22.767 13.983 1.492 26.759 Atomic orbital electron populations 1.22950 0.78943 1.03784 1.01380 1.87944 1.21820 1.28094 1.95725 1.21351 0.86782 0.85263 1.03489 1.20820 0.97339 1.03726 0.93436 1.23450 0.89451 0.89594 0.98919 1.67829 1.08960 1.13550 1.30899 1.23233 1.01048 0.90903 0.86662 1.20937 0.95536 1.09505 0.94391 1.18203 0.82384 0.75765 0.88375 1.90738 1.71620 1.51990 1.30692 1.46153 1.05749 1.73065 1.10808 1.21584 0.90453 0.97104 0.85999 0.90263 1.22507 0.96762 0.94954 1.01921 1.22327 0.94200 0.99165 0.99435 1.22459 0.98242 0.94438 0.99704 1.22361 0.94619 0.96477 0.98474 0.90096 1.20709 0.87969 0.92419 0.95120 1.42514 1.14126 1.50003 1.31624 1.19630 0.98458 1.15768 1.03498 0.90773 1.25511 0.96518 1.02870 1.01710 1.69813 1.05480 1.47107 1.39410 0.85132 0.77649 0.78299 0.79049 1.19177 1.22278 1.21900 1.21763 0.92167 0.89428 0.99692 0.92943 0.89135 0.92178 0.89041 0.90709 0.79273 0.81393 0.75264 0.90548 0.91085 0.90772 0.90116 0.91552 0.92379 0.95357 0.97200 0.79235 0.94034 0.83420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.42 -7.00 10.69 -148.98 -1.59 -8.59 16 3 C 0.11 1.34 6.08 71.24 0.43 1.77 16 4 C -0.15 -2.68 5.52 -19.81 -0.11 -2.79 16 5 C 0.14 2.58 10.85 84.71 0.92 3.50 16 6 N -0.50 -11.66 10.35 -194.76 -2.01 -13.67 16 7 C 0.14 3.23 10.71 85.02 0.91 4.14 16 8 C -0.20 -4.83 5.89 -19.99 -0.12 -4.95 16 9 C 0.57 15.78 7.77 86.79 0.67 16.45 16 10 O -0.57 -19.04 16.10 -3.89 -0.06 -19.10 16 11 N -0.71 -18.23 4.33 -441.98 -1.91 -20.14 16 12 C 0.15 4.11 3.09 45.71 0.14 4.25 16 13 H 0.08 2.33 7.61 -2.39 -0.02 2.31 16 14 C -0.12 -2.74 6.59 31.32 0.21 -2.54 16 15 C -0.11 -2.43 6.83 31.67 0.22 -2.22 16 16 C -0.11 -3.08 6.20 31.89 0.20 -2.88 16 17 C -0.10 -3.06 2.84 -9.72 -0.03 -3.09 16 18 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 19 C 0.16 6.26 4.73 86.38 0.41 6.67 16 20 N -0.74 -36.64 5.49 -343.44 -1.89 -38.53 16 21 C -0.24 -13.35 9.99 84.03 0.84 -12.51 16 22 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 23 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 24 N -0.97 -58.80 13.06 21.65 0.28 -58.52 16 25 Si 0.97 46.22 29.55 68.60 2.03 48.25 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 27 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 28 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 29 C 0.00 -0.09 9.39 22.73 0.21 0.12 16 30 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.09 0.64 8.09 -2.38 -0.02 0.62 16 34 H 0.07 0.75 8.09 -2.39 -0.02 0.73 16 35 H 0.19 2.16 8.06 -2.91 -0.02 2.13 16 36 H 0.17 3.47 6.42 -2.91 -0.02 3.45 16 37 H 0.41 9.77 4.57 -92.71 -0.42 9.35 16 38 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.07 1.55 7.92 -2.39 -0.02 1.53 16 40 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 41 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.07 1.85 7.97 -2.38 -0.02 1.83 16 43 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 44 H 0.03 1.01 6.40 -2.38 -0.02 1.00 16 45 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 46 H 0.38 19.78 7.64 -92.71 -0.71 19.07 16 47 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 48 H 0.15 3.14 7.74 -2.91 -0.02 3.11 16 Total: -1.00 -71.94 393.81 1.31 -70.63 By element: Atomic # 1 Polarization: 36.16 SS G_CDS: -0.15 Total: 36.01 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 6.62 Total: 3.67 kcal Atomic # 7 Polarization: -125.32 SS G_CDS: -5.53 Total: -130.86 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -1.65 Total: -27.69 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -71.94 1.31 -70.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496886539.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.045 kcal (2) G-P(sol) polarization free energy of solvation -71.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds