Wall clock time and date at job start Tue Mar 31 2020 17:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35749 * 116.99556 * 2 1 4 4 C 1.39216 * 120.81299 * 0.02562 * 3 2 1 5 5 C 1.38318 * 119.28645 * 180.02562 * 4 3 2 6 6 N 1.31609 * 120.96911 * 359.97438 * 5 4 3 7 7 C 1.32802 * 121.78639 * 0.02562 * 6 5 4 8 8 C 1.48178 * 119.69958 * 180.02562 * 7 6 5 9 9 O 1.21516 * 119.99969 * 180.02562 * 8 7 6 10 10 N 1.34776 * 120.00164 * 359.97438 * 8 7 6 11 11 C 1.46501 * 120.00265 * 185.29930 * 10 8 7 12 12 H 1.09001 * 109.46911 * 355.20185 * 11 10 8 13 13 C 1.53004 * 109.47128 * 115.19729 * 11 10 8 14 14 N 1.46496 * 109.46939 * 305.00312 * 13 11 10 15 15 C 1.36942 * 119.99653 * 179.97438 * 14 13 11 16 16 H 1.08003 * 120.00035 * 0.02562 * 15 14 13 17 17 C 1.38814 * 119.99894 * 179.97438 * 15 14 13 18 18 N 1.31621 * 119.99825 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00058 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47132 * 89.99535 * 19 17 15 21 21 H 1.48500 * 109.46750 * 209.99513 * 19 17 15 22 22 H 1.48501 * 109.47031 * 329.99278 * 19 17 15 23 23 C 1.53001 * 109.47151 * 235.19947 * 11 10 8 24 24 C 1.54266 * 110.02870 * 180.69445 * 23 11 10 25 25 C 1.54892 * 104.19440 * 217.10670 * 24 23 11 26 26 C 1.54884 * 102.75016 * 37.94389 * 25 24 23 27 27 C 1.53873 * 110.03215 * 63.53132 * 23 11 10 28 28 C 1.39098 * 120.60102 * 0.27920 * 7 6 5 29 29 H 1.09001 * 109.47076 * 299.99803 * 1 2 3 30 30 H 1.09002 * 109.47296 * 60.00364 * 1 2 3 31 31 H 1.09004 * 109.46879 * 179.97438 * 1 2 3 32 32 H 1.07997 * 120.35979 * 0.02562 * 4 3 2 33 33 H 1.07994 * 119.51384 * 180.02562 * 5 4 3 34 34 H 0.96998 * 119.99787 * 5.30484 * 10 8 7 35 35 H 1.09002 * 109.46901 * 185.00100 * 13 11 10 36 36 H 1.09001 * 109.46918 * 65.00505 * 13 11 10 37 37 H 0.96998 * 120.00393 * 0.02562 * 14 13 11 38 38 H 0.97001 * 119.99665 * 180.02562 * 18 17 15 39 39 H 1.08991 * 110.01796 * 302.14030 * 23 11 10 40 40 H 1.08997 * 110.49336 * 335.78383 * 24 23 11 41 41 H 1.08995 * 110.48405 * 98.43275 * 24 23 11 42 42 H 1.09007 * 110.75412 * 279.63061 * 25 24 23 43 43 H 1.08996 * 110.75732 * 156.26294 * 25 24 23 44 44 H 1.09000 * 110.49157 * 203.38179 * 26 25 24 45 45 H 1.09001 * 110.59911 * 80.79122 * 26 25 24 46 46 H 1.08999 * 110.03530 * 238.56844 * 27 23 11 47 47 H 1.09006 * 110.03177 * 359.95071 * 27 23 11 48 48 H 1.08002 * 120.51268 * 179.72207 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2096 0.0000 4 6 1.3036 2.3877 0.0005 5 6 1.9640 3.6030 0.0000 6 7 3.2789 3.6592 -0.0005 7 6 4.0260 2.5613 -0.0011 8 6 5.5031 2.6784 -0.0011 9 8 6.1920 1.6774 -0.0020 10 7 6.0827 3.8952 -0.0010 11 6 7.5382 4.0134 -0.1182 12 1 7.9853 3.0193 -0.1090 13 6 7.8887 4.7180 -1.4303 14 7 7.2686 4.0037 -2.5490 15 6 7.4441 4.4539 -3.8303 16 1 8.0399 5.3353 -4.0162 17 6 6.8570 3.7767 -4.8904 18 7 7.0260 4.2092 -6.1220 19 14 5.8271 2.2518 -4.5690 20 1 4.4107 2.6460 -4.3603 21 1 5.9197 1.3372 -5.7352 22 1 6.3322 1.5599 -3.3559 23 6 8.0802 4.8274 1.0584 24 6 9.6111 4.9746 0.9385 25 6 10.1170 4.8849 2.3997 26 6 9.1895 3.8090 3.0170 27 6 7.8121 4.0862 2.3800 28 6 3.4345 1.3023 -0.0069 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2241 2.3532 0.0014 33 1 1.3923 4.5192 0.0008 34 1 5.5361 4.6927 0.0766 35 1 8.9710 4.7270 -1.5601 36 1 7.5176 5.7425 -1.4029 37 1 6.7332 3.2122 -2.3820 38 1 6.6154 3.7362 -6.8627 39 1 7.6103 5.8106 1.0798 40 1 10.0268 4.1637 0.3404 41 1 9.8685 5.9407 0.5044 42 1 9.9940 5.8400 2.9104 43 1 11.1573 4.5611 2.4291 44 1 9.1392 3.9243 4.0998 45 1 9.5359 2.8088 2.7566 46 1 7.2129 4.7101 3.0431 47 1 7.2952 3.1470 2.1831 48 1 4.0435 0.4104 -0.0118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500104820.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:04 Heat of formation + Delta-G solvation = -32.614422 kcal Electronic energy + Delta-G solvation = -29371.651488 eV Core-core repulsion = 25426.928059 eV Total energy + Delta-G solvation = -3944.723428 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.98484 -39.80342 -38.55667 -37.76902 -35.42513 -33.64151 -31.91750 -31.77675 -31.06832 -29.84116 -28.60306 -27.96121 -26.48649 -24.57992 -23.55224 -22.81059 -21.39726 -20.58713 -20.36861 -19.79478 -18.62678 -17.61713 -17.49564 -16.44056 -16.21451 -16.16009 -15.76308 -15.40746 -15.25721 -14.78774 -14.67463 -14.32763 -14.09896 -13.89048 -13.74684 -13.37070 -13.20573 -12.86324 -12.75552 -12.56386 -12.18582 -11.92562 -11.64611 -11.51848 -11.47003 -11.05457 -11.02062 -10.95075 -10.80586 -10.62416 -10.47052 -10.37167 -10.10572 -10.06219 -9.64334 -9.53897 -9.43862 -9.14294 -8.84075 -8.67091 -7.15509 -5.71462 -3.05315 0.52159 1.10639 2.68019 2.81320 3.34458 3.43332 3.50300 3.54553 3.82878 4.11692 4.35095 4.57467 4.63984 4.66580 4.68454 4.72803 4.75636 4.77352 4.91710 5.07466 5.09459 5.19498 5.42108 5.50808 5.51563 5.54952 5.58128 5.60110 5.69923 5.73067 5.78400 5.86759 5.88149 5.88796 5.97716 6.08596 6.16519 6.19795 6.31976 6.37259 6.43452 6.49389 6.65447 6.86895 6.89221 7.54427 7.84723 8.05276 8.38748 8.48258 9.28107 10.01340 10.21284 11.46981 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.007712 B = 0.004972 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3629.861550 B = 5630.207319 C = 8437.074813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.161 3.839 4 C -0.246 4.246 5 C 0.137 3.863 6 N -0.476 5.476 7 C 0.120 3.880 8 C 0.571 3.429 9 O -0.531 6.531 10 N -0.689 5.689 11 C 0.131 3.869 12 H 0.102 0.898 13 C 0.147 3.853 14 N -0.753 5.753 15 C -0.239 4.239 16 H 0.091 0.909 17 C 0.007 3.993 18 N -0.935 5.935 19 Si 0.872 3.128 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.272 1.272 23 C -0.095 4.095 24 C -0.117 4.117 25 C -0.124 4.124 26 C -0.124 4.124 27 C -0.118 4.118 28 C -0.146 4.146 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.143 0.857 33 H 0.166 0.834 34 H 0.411 0.589 35 H 0.041 0.959 36 H 0.030 0.970 37 H 0.362 0.638 38 H 0.258 0.742 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.059 0.941 45 H 0.064 0.936 46 H 0.059 0.941 47 H 0.066 0.934 48 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.027 -1.899 20.713 23.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.219 6.219 3 C 0.108 3.892 4 C -0.267 4.267 5 C -0.022 4.022 6 N -0.191 5.191 7 C -0.017 4.017 8 C 0.355 3.645 9 O -0.407 6.407 10 N -0.339 5.339 11 C 0.026 3.974 12 H 0.120 0.880 13 C 0.019 3.981 14 N -0.398 5.398 15 C -0.369 4.369 16 H 0.109 0.891 17 C -0.188 4.188 18 N -0.583 5.583 19 Si 0.702 3.298 20 H -0.214 1.214 21 H -0.216 1.216 22 H -0.197 1.197 23 C -0.115 4.115 24 C -0.155 4.155 25 C -0.161 4.161 26 C -0.162 4.162 27 C -0.156 4.156 28 C -0.168 4.168 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.123 0.877 32 H 0.161 0.839 33 H 0.183 0.817 34 H 0.246 0.754 35 H 0.058 0.942 36 H 0.048 0.952 37 H 0.195 0.805 38 H 0.068 0.932 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.078 0.922 47 H 0.084 0.916 48 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -8.920 -1.912 20.494 22.433 hybrid contribution -1.998 -1.408 -0.093 2.446 sum -10.918 -3.321 20.401 23.376 Atomic orbital electron populations 1.23170 0.77629 1.04528 1.01718 1.86100 1.21976 1.25984 1.87819 1.19187 0.92089 0.84856 0.93084 1.22395 1.01739 0.93229 1.09365 1.22588 0.89695 0.97194 0.92746 1.67612 1.07308 1.31137 1.13079 1.21037 0.94612 0.88634 0.97420 1.17731 0.85621 0.84229 0.76912 1.90794 1.63152 1.36531 1.50219 1.45664 1.08332 1.08089 1.71805 1.21643 0.79265 1.01609 0.94854 0.87966 1.21035 0.96833 0.94758 0.85457 1.42660 1.61890 1.32258 1.03037 1.19054 1.26722 1.09612 0.81544 0.89109 1.24596 1.00486 0.98601 0.95129 1.69697 1.49092 1.41712 0.97785 0.86703 0.80942 0.84658 0.77507 1.21353 1.21585 1.19734 1.22048 0.96423 0.99078 0.93962 1.22406 0.93931 1.02521 0.96618 1.22491 0.98853 0.98764 0.96029 1.22354 0.95395 0.99217 0.99232 1.22167 0.97123 1.00540 0.95745 1.21424 0.92062 0.99905 1.03369 0.92256 0.92162 0.87725 0.83902 0.81661 0.75366 0.94158 0.95243 0.80494 0.93167 0.90509 0.90836 0.91145 0.91745 0.91751 0.92211 0.91678 0.92218 0.91551 0.82672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.84 101.05 0.99 1.15 16 2 O -0.31 -3.52 10.51 -18.96 -0.20 -3.72 16 3 C 0.16 2.07 6.73 -38.85 -0.26 1.81 16 4 C -0.25 -2.57 9.12 -39.19 -0.36 -2.93 16 5 C 0.14 1.56 11.17 -17.62 -0.20 1.36 16 6 N -0.48 -7.00 9.55 -9.87 -0.09 -7.09 16 7 C 0.12 1.98 6.75 -83.05 -0.56 1.42 16 8 C 0.57 10.40 7.06 -12.18 -0.09 10.32 16 9 O -0.53 -11.01 15.66 5.35 0.08 -10.93 16 10 N -0.69 -11.33 4.00 -54.64 -0.22 -11.55 16 11 C 0.13 2.14 1.70 -67.93 -0.12 2.03 16 12 H 0.10 1.89 6.91 -51.93 -0.36 1.53 16 13 C 0.15 2.90 5.61 -4.04 -0.02 2.88 16 14 N -0.75 -19.00 5.24 -59.91 -0.31 -19.31 16 15 C -0.24 -7.07 10.47 -15.06 -0.16 -7.22 16 16 H 0.09 2.81 8.06 -52.48 -0.42 2.39 16 17 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 18 N -0.93 -30.35 13.97 55.49 0.78 -29.58 16 19 Si 0.87 23.96 27.74 -169.99 -4.71 19.24 16 20 H -0.29 -7.83 7.11 56.52 0.40 -7.43 16 21 H -0.29 -7.93 7.11 56.52 0.40 -7.52 16 22 H -0.27 -7.43 6.52 56.52 0.37 -7.06 16 23 C -0.10 -1.20 2.71 -89.50 -0.24 -1.45 16 24 C -0.12 -1.37 5.33 -25.07 -0.13 -1.51 16 25 C -0.12 -1.24 6.91 -24.74 -0.17 -1.41 16 26 C -0.12 -1.32 6.83 -25.07 -0.17 -1.49 16 27 C -0.12 -1.40 6.23 -25.61 -0.16 -1.56 16 28 C -0.15 -2.25 9.60 -38.89 -0.37 -2.62 16 29 H 0.06 0.29 7.71 -51.93 -0.40 -0.11 16 30 H 0.06 0.35 7.71 -51.93 -0.40 -0.05 16 31 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.14 0.98 6.45 -52.49 -0.34 0.64 16 33 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.41 6.16 8.17 -40.82 -0.33 5.83 16 35 H 0.04 0.79 7.21 -51.93 -0.37 0.41 16 36 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.36 9.41 4.67 -40.82 -0.19 9.21 16 38 H 0.26 8.01 8.31 -40.82 -0.34 7.67 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.07 0.94 7.57 -51.93 -0.39 0.55 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.07 0.92 7.35 -51.93 -0.38 0.54 16 48 H 0.16 2.42 7.64 -52.49 -0.40 2.02 16 LS Contribution 388.03 15.07 5.85 5.85 Total: -1.00 -36.27 388.03 -8.34 -44.61 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -7.39 Total: 11.56 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -2.11 Total: 0.92 kcal Atomic # 7 Polarization: -67.68 SS G_CDS: 0.15 Total: -67.53 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.12 Total: -14.65 kcal Atomic # 14 Polarization: 23.96 SS G_CDS: -4.71 Total: 19.24 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.27 -8.34 -44.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500104820.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.995 kcal (2) G-P(sol) polarization free energy of solvation -36.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds