Wall clock time and date at job start Tue Mar 31 2020 17:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35749 * 116.99556 * 2 1 4 4 C 1.39216 * 120.81299 * 0.02562 * 3 2 1 5 5 C 1.38318 * 119.28645 * 180.02562 * 4 3 2 6 6 N 1.31609 * 120.96911 * 359.97438 * 5 4 3 7 7 C 1.32802 * 121.78639 * 0.02562 * 6 5 4 8 8 C 1.48178 * 119.69958 * 180.02562 * 7 6 5 9 9 O 1.21516 * 119.99969 * 180.02562 * 8 7 6 10 10 N 1.34776 * 120.00164 * 359.97438 * 8 7 6 11 11 C 1.46501 * 120.00265 * 185.29930 * 10 8 7 12 12 H 1.09001 * 109.46911 * 355.20185 * 11 10 8 13 13 C 1.53004 * 109.47128 * 115.19729 * 11 10 8 14 14 N 1.46496 * 109.46939 * 305.00312 * 13 11 10 15 15 C 1.36942 * 119.99653 * 179.97438 * 14 13 11 16 16 H 1.08003 * 120.00035 * 0.02562 * 15 14 13 17 17 C 1.38814 * 119.99894 * 179.97438 * 15 14 13 18 18 N 1.31621 * 119.99825 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00058 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47132 * 89.99535 * 19 17 15 21 21 H 1.48500 * 109.46750 * 209.99513 * 19 17 15 22 22 H 1.48501 * 109.47031 * 329.99278 * 19 17 15 23 23 C 1.53001 * 109.47151 * 235.19947 * 11 10 8 24 24 C 1.54266 * 110.02870 * 180.69445 * 23 11 10 25 25 C 1.54892 * 104.19440 * 217.10670 * 24 23 11 26 26 C 1.54884 * 102.75016 * 37.94389 * 25 24 23 27 27 C 1.53873 * 110.03215 * 63.53132 * 23 11 10 28 28 C 1.39098 * 120.60102 * 0.27920 * 7 6 5 29 29 H 1.09001 * 109.47076 * 299.99803 * 1 2 3 30 30 H 1.09002 * 109.47296 * 60.00364 * 1 2 3 31 31 H 1.09004 * 109.46879 * 179.97438 * 1 2 3 32 32 H 1.07997 * 120.35979 * 0.02562 * 4 3 2 33 33 H 1.07994 * 119.51384 * 180.02562 * 5 4 3 34 34 H 0.96998 * 119.99787 * 5.30484 * 10 8 7 35 35 H 1.09002 * 109.46901 * 185.00100 * 13 11 10 36 36 H 1.09001 * 109.46918 * 65.00505 * 13 11 10 37 37 H 0.96998 * 120.00393 * 0.02562 * 14 13 11 38 38 H 0.97001 * 119.99665 * 180.02562 * 18 17 15 39 39 H 1.08991 * 110.01796 * 302.14030 * 23 11 10 40 40 H 1.08997 * 110.49336 * 335.78383 * 24 23 11 41 41 H 1.08995 * 110.48405 * 98.43275 * 24 23 11 42 42 H 1.09007 * 110.75412 * 279.63061 * 25 24 23 43 43 H 1.08996 * 110.75732 * 156.26294 * 25 24 23 44 44 H 1.09000 * 110.49157 * 203.38179 * 26 25 24 45 45 H 1.09001 * 110.59911 * 80.79122 * 26 25 24 46 46 H 1.08999 * 110.03530 * 238.56844 * 27 23 11 47 47 H 1.09006 * 110.03177 * 359.95071 * 27 23 11 48 48 H 1.08002 * 120.51268 * 179.72207 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2096 0.0000 4 6 1.3036 2.3877 0.0005 5 6 1.9640 3.6030 0.0000 6 7 3.2789 3.6592 -0.0005 7 6 4.0260 2.5613 -0.0011 8 6 5.5031 2.6784 -0.0011 9 8 6.1920 1.6774 -0.0020 10 7 6.0827 3.8952 -0.0010 11 6 7.5382 4.0134 -0.1182 12 1 7.9853 3.0193 -0.1090 13 6 7.8887 4.7180 -1.4303 14 7 7.2686 4.0037 -2.5490 15 6 7.4441 4.4539 -3.8303 16 1 8.0399 5.3353 -4.0162 17 6 6.8570 3.7767 -4.8904 18 7 7.0260 4.2092 -6.1220 19 14 5.8271 2.2518 -4.5690 20 1 4.4107 2.6460 -4.3603 21 1 5.9197 1.3372 -5.7352 22 1 6.3322 1.5599 -3.3559 23 6 8.0802 4.8274 1.0584 24 6 9.6111 4.9746 0.9385 25 6 10.1170 4.8849 2.3997 26 6 9.1895 3.8090 3.0170 27 6 7.8121 4.0862 2.3800 28 6 3.4345 1.3023 -0.0069 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2241 2.3532 0.0014 33 1 1.3923 4.5192 0.0008 34 1 5.5361 4.6927 0.0766 35 1 8.9710 4.7270 -1.5601 36 1 7.5176 5.7425 -1.4029 37 1 6.7332 3.2122 -2.3820 38 1 6.6154 3.7362 -6.8627 39 1 7.6103 5.8106 1.0798 40 1 10.0268 4.1637 0.3404 41 1 9.8685 5.9407 0.5044 42 1 9.9940 5.8400 2.9104 43 1 11.1573 4.5611 2.4291 44 1 9.1392 3.9243 4.0998 45 1 9.5359 2.8088 2.7566 46 1 7.2129 4.7101 3.0431 47 1 7.2952 3.1470 2.1831 48 1 4.0435 0.4104 -0.0118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500104820.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:03 Heat of formation + Delta-G solvation = -58.353125 kcal Electronic energy + Delta-G solvation = -29372.767602 eV Core-core repulsion = 25426.928059 eV Total energy + Delta-G solvation = -3945.839542 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.02439 -40.98228 -39.52233 -38.86602 -37.03247 -35.39411 -33.51911 -32.77416 -32.59668 -31.15677 -29.54134 -28.59392 -27.98930 -25.84132 -24.52343 -24.48829 -22.89335 -21.91164 -21.32096 -20.87217 -19.95049 -19.48770 -18.51274 -17.54459 -17.24876 -16.98448 -16.82245 -16.73242 -16.62853 -16.20357 -15.84358 -15.69326 -15.46829 -15.13558 -14.91445 -14.84220 -14.41481 -14.25787 -14.09705 -13.89960 -13.45846 -13.31957 -13.07087 -12.75355 -12.59098 -12.37665 -12.28309 -12.22139 -11.93528 -11.92064 -11.83803 -11.74403 -11.52189 -11.42662 -11.28490 -11.06170 -10.77176 -10.47163 -10.07294 -10.02120 -9.34245 -8.10500 -5.40309 -0.54169 0.14051 1.21311 1.25530 1.33596 1.57398 1.78230 2.25075 2.36542 2.72775 3.04444 3.21575 3.40520 3.52200 3.70392 3.73620 3.80080 3.89750 3.92911 4.08496 4.15756 4.28578 4.33275 4.33985 4.41905 4.50425 4.61073 4.62098 4.70200 4.71497 4.73684 4.82748 4.85080 4.86338 4.90223 5.03287 5.10088 5.12723 5.28791 5.29222 5.32177 5.45079 5.52493 5.56866 5.70753 6.08022 6.14927 6.33375 6.72992 7.00571 7.06795 7.78532 7.95572 9.11256 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.007712 B = 0.004972 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3629.861550 B = 5630.207319 C = 8437.074813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.327 6.327 3 C 0.158 3.842 4 C -0.226 4.226 5 C 0.134 3.866 6 N -0.493 5.493 7 C 0.095 3.905 8 C 0.564 3.436 9 O -0.570 6.570 10 N -0.682 5.682 11 C 0.141 3.859 12 H 0.077 0.923 13 C 0.144 3.856 14 N -0.759 5.759 15 C -0.224 4.224 16 H 0.071 0.929 17 C -0.050 4.050 18 N -0.975 5.975 19 Si 0.931 3.069 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.087 4.087 24 C -0.120 4.120 25 C -0.115 4.115 26 C -0.124 4.124 27 C -0.114 4.114 28 C -0.170 4.170 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.122 0.878 32 H 0.187 0.813 33 H 0.207 0.793 34 H 0.418 0.582 35 H 0.045 0.955 36 H 0.042 0.958 37 H 0.358 0.642 38 H 0.258 0.742 39 H 0.093 0.907 40 H 0.056 0.944 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.052 0.948 46 H 0.076 0.924 47 H 0.040 0.960 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.332 -0.952 22.800 25.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.239 6.239 3 C 0.104 3.896 4 C -0.246 4.246 5 C -0.025 4.025 6 N -0.208 5.208 7 C -0.042 4.042 8 C 0.350 3.650 9 O -0.449 6.449 10 N -0.331 5.331 11 C 0.037 3.963 12 H 0.095 0.905 13 C 0.017 3.983 14 N -0.404 5.404 15 C -0.355 4.355 16 H 0.089 0.911 17 C -0.242 4.242 18 N -0.626 5.626 19 Si 0.761 3.239 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.107 4.107 24 C -0.158 4.158 25 C -0.153 4.153 26 C -0.161 4.161 27 C -0.152 4.152 28 C -0.192 4.192 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.140 0.860 32 H 0.204 0.796 33 H 0.224 0.776 34 H 0.255 0.745 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.191 0.809 38 H 0.067 0.933 39 H 0.112 0.888 40 H 0.075 0.925 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.071 0.929 46 H 0.095 0.905 47 H 0.059 0.941 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.233 -0.941 22.628 25.280 hybrid contribution -1.363 -1.682 -0.693 2.273 sum -12.596 -2.622 21.934 25.429 Atomic orbital electron populations 1.23570 0.74936 1.06418 1.03275 1.86091 1.24737 1.25541 1.87501 1.19248 0.91318 0.86346 0.92694 1.22836 1.03717 0.91672 1.06377 1.23359 0.88732 0.99276 0.91139 1.67591 1.08965 1.30360 1.13895 1.20759 0.93686 0.89675 1.00037 1.18156 0.86737 0.84016 0.76141 1.90753 1.64324 1.37688 1.52109 1.45628 1.08325 1.08058 1.71122 1.21494 0.79489 1.00543 0.94798 0.90495 1.21270 0.96688 0.95040 0.85309 1.42769 1.62148 1.32475 1.03011 1.19116 1.24777 1.08284 0.83285 0.91105 1.25187 1.02456 1.01438 0.95107 1.69818 1.50914 1.43305 0.98584 0.85760 0.79650 0.81611 0.76916 1.20794 1.21291 1.20312 1.22028 0.97043 0.99080 0.92519 1.22441 0.93111 1.02314 0.97979 1.22466 0.99047 0.99325 0.94441 1.22358 0.94577 0.98893 1.00303 1.22120 0.97997 0.99443 0.95607 1.21408 0.93743 0.99037 1.05041 0.90117 0.90983 0.85954 0.79552 0.77628 0.74462 0.93685 0.94009 0.80939 0.93259 0.88827 0.92545 0.90272 0.90023 0.90897 0.90392 0.92892 0.90549 0.94114 0.84529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.84 113.37 1.12 1.23 16 2 O -0.33 -6.99 10.51 -90.74 -0.95 -7.95 16 3 C 0.16 3.84 6.73 22.75 0.15 3.99 16 4 C -0.23 -3.93 9.12 22.52 0.21 -3.73 16 5 C 0.13 2.63 11.17 84.75 0.95 3.58 16 6 N -0.49 -13.89 9.55 -185.15 -1.77 -15.66 16 7 C 0.09 3.17 6.75 41.85 0.28 3.46 16 8 C 0.56 21.34 7.06 86.88 0.61 21.96 16 9 O -0.57 -25.09 15.66 -3.76 -0.06 -25.15 16 10 N -0.68 -22.72 4.00 -445.08 -1.78 -24.50 16 11 C 0.14 4.69 1.70 44.99 0.08 4.77 16 12 H 0.08 2.99 6.91 -2.39 -0.02 2.97 16 13 C 0.14 5.66 5.61 86.38 0.48 6.15 16 14 N -0.76 -38.75 5.24 -343.44 -1.80 -40.55 16 15 C -0.22 -13.38 10.47 84.03 0.88 -12.50 16 16 H 0.07 4.47 8.06 -2.91 -0.02 4.45 16 17 C -0.05 -3.10 5.50 84.86 0.47 -2.64 16 18 N -0.98 -64.39 13.97 21.65 0.30 -64.08 16 19 Si 0.93 50.74 27.74 68.60 1.90 52.64 16 20 H -0.28 -14.96 7.11 99.48 0.71 -14.25 16 21 H -0.29 -15.36 7.11 99.48 0.71 -14.65 16 22 H -0.28 -15.20 6.52 99.48 0.65 -14.55 16 23 C -0.09 -2.11 2.71 -10.07 -0.03 -2.14 16 24 C -0.12 -2.69 5.33 31.67 0.17 -2.52 16 25 C -0.12 -2.06 6.91 31.88 0.22 -1.84 16 26 C -0.12 -2.44 6.83 31.67 0.22 -2.22 16 27 C -0.11 -2.60 6.23 31.32 0.20 -2.40 16 28 C -0.17 -5.38 9.60 22.72 0.22 -5.17 16 29 H 0.08 0.47 7.71 -2.39 -0.02 0.45 16 30 H 0.07 0.56 7.71 -2.39 -0.02 0.54 16 31 H 0.12 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.19 1.52 6.45 -2.91 -0.02 1.51 16 33 H 0.21 2.23 8.06 -2.91 -0.02 2.21 16 34 H 0.42 12.41 8.17 -92.71 -0.76 11.65 16 35 H 0.05 1.76 7.21 -2.39 -0.02 1.75 16 36 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.36 18.90 4.67 -92.71 -0.43 18.47 16 38 H 0.26 16.28 8.31 -92.71 -0.77 15.51 16 39 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.06 1.45 7.57 -2.39 -0.02 1.43 16 41 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 43 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.04 1.15 7.35 -2.38 -0.02 1.13 16 48 H 0.14 4.65 7.64 -2.91 -0.02 4.63 16 Total: -1.00 -81.68 388.03 1.79 -79.89 By element: Atomic # 1 Polarization: 35.64 SS G_CDS: -0.27 Total: 35.37 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 6.22 Total: 9.98 kcal Atomic # 7 Polarization: -139.74 SS G_CDS: -5.04 Total: -144.79 kcal Atomic # 8 Polarization: -32.09 SS G_CDS: -1.01 Total: -33.10 kcal Atomic # 14 Polarization: 50.74 SS G_CDS: 1.90 Total: 52.64 kcal Total: -81.68 1.79 -79.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500104820.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.539 kcal (2) G-P(sol) polarization free energy of solvation -81.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds