Wall clock time and date at job start Tue Mar 31 2020 17:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35744 * 117.00231 * 2 1 4 4 C 1.39215 * 120.81404 * 359.97438 * 3 2 1 5 5 C 1.38308 * 119.29325 * 180.02562 * 4 3 2 6 6 N 1.31620 * 120.96810 * 359.97438 * 5 4 3 7 7 C 1.32794 * 121.78119 * 0.02562 * 6 5 4 8 8 C 1.48181 * 119.69637 * 180.02562 * 7 6 5 9 9 O 1.21513 * 119.99976 * 180.02562 * 8 7 6 10 10 N 1.34771 * 120.00231 * 359.97438 * 8 7 6 11 11 C 1.46500 * 120.00379 * 174.60143 * 10 8 7 12 12 C 1.53004 * 109.47050 * 64.34859 * 11 10 8 13 13 N 1.46497 * 109.46808 * 54.81686 * 12 11 10 14 14 C 1.36942 * 120.00013 * 184.97433 * 13 12 11 15 15 H 1.08001 * 119.99776 * 0.02562 * 14 13 12 16 16 C 1.38811 * 119.99890 * 180.02562 * 14 13 12 17 17 N 1.31615 * 120.00485 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99706 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47304 * 59.99634 * 18 16 14 20 20 H 1.48494 * 109.47339 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47005 * 299.99887 * 18 16 14 22 22 C 1.53001 * 109.47267 * 184.35124 * 11 10 8 23 23 C 1.53004 * 109.47143 * 60.00249 * 22 11 10 24 24 C 1.53000 * 109.47385 * 59.99815 * 23 22 11 25 25 C 1.52997 * 109.46816 * 300.00052 * 24 23 22 26 26 C 1.53000 * 109.46970 * 304.35131 * 11 10 8 27 27 C 1.39101 * 120.60556 * 0.27014 * 7 6 5 28 28 H 1.09007 * 109.47095 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47480 * 300.00286 * 1 2 3 30 30 H 1.09001 * 109.46836 * 60.00729 * 1 2 3 31 31 H 1.08008 * 120.35467 * 0.02911 * 4 3 2 32 32 H 1.08000 * 119.51969 * 180.02562 * 5 4 3 33 33 H 0.97001 * 119.99735 * 354.60041 * 10 8 7 34 34 H 1.08998 * 109.46718 * 174.81220 * 12 11 10 35 35 H 1.08993 * 109.47058 * 294.81595 * 12 11 10 36 36 H 0.97004 * 120.00135 * 4.97700 * 13 12 11 37 37 H 0.96997 * 120.00321 * 180.02562 * 17 16 14 38 38 H 1.09004 * 109.47011 * 179.97438 * 22 11 10 39 39 H 1.09002 * 109.47096 * 299.99772 * 22 11 10 40 40 H 1.09004 * 109.46701 * 299.99620 * 23 22 11 41 41 H 1.08996 * 109.47257 * 180.02562 * 23 22 11 42 42 H 1.08993 * 109.47178 * 180.02562 * 24 23 22 43 43 H 1.08994 * 109.46868 * 59.99613 * 24 23 22 44 44 H 1.08998 * 109.47613 * 299.99896 * 25 24 23 45 45 H 1.08999 * 109.47021 * 179.97438 * 25 24 23 46 46 H 1.09005 * 109.47258 * 59.99940 * 26 11 10 47 47 H 1.09004 * 109.47360 * 179.97438 * 26 11 10 48 48 H 1.08005 * 120.50981 * 179.73119 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3038 2.3877 -0.0005 5 6 1.9642 3.6029 -0.0011 6 7 3.2792 3.6591 -0.0006 7 6 4.0261 2.5611 0.0000 8 6 5.5033 2.6781 0.0011 9 8 6.1921 1.6771 0.0011 10 7 6.0829 3.8948 0.0011 11 6 7.5382 4.0130 0.1216 12 6 8.2043 3.3791 -1.1013 13 7 7.6645 3.9857 -2.3207 14 6 8.0379 3.5054 -3.5475 15 1 8.7301 2.6793 -3.6161 16 6 7.5268 4.0805 -4.7029 17 7 6.6836 5.0876 -4.6194 18 14 8.0357 3.4249 -6.3765 19 1 7.6498 1.9950 -6.4863 20 1 7.3547 4.2041 -7.4414 21 1 9.5069 3.5538 -6.5321 22 6 7.9247 5.4911 0.2041 23 6 7.2586 6.1249 1.4271 24 6 7.7257 5.4041 2.6932 25 6 7.3391 3.9261 2.6106 26 6 8.0053 3.2922 1.3877 27 6 3.4346 1.3021 -0.0056 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 0.2242 2.3532 -0.0005 32 1 1.3926 4.5192 -0.0011 33 1 5.5365 4.6923 -0.0787 34 1 9.2802 3.5479 -1.0572 35 1 8.0046 2.3077 -1.1093 36 1 7.0425 4.7275 -2.2591 37 1 6.3262 5.4892 -5.4267 38 1 9.0075 5.5790 0.2942 39 1 7.5920 6.0046 -0.6980 40 1 6.1759 6.0370 1.3374 41 1 7.5336 7.1780 1.4856 42 1 7.2509 5.8554 3.5643 43 1 8.8084 5.4920 2.7828 44 1 6.2564 3.8382 2.5210 45 1 7.6723 3.4125 3.5124 46 1 7.7299 2.2392 1.3289 47 1 9.0881 3.3798 1.4772 48 1 4.0435 0.4102 -0.0096 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506517963.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:26 Heat of formation + Delta-G solvation = -54.181473 kcal Electronic energy + Delta-G solvation = -29917.666141 eV Core-core repulsion = 25972.007495 eV Total energy + Delta-G solvation = -3945.658646 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.05743 -41.24046 -39.46034 -38.57015 -36.39405 -34.71510 -33.32814 -32.68945 -32.27377 -31.69151 -30.65808 -28.52462 -27.02048 -25.47857 -24.68184 -24.41730 -23.49581 -22.30571 -21.55461 -20.09316 -19.75333 -19.23867 -18.33918 -17.48245 -16.91995 -16.88059 -16.73768 -16.52363 -16.20314 -16.04571 -15.70190 -15.30010 -15.19866 -14.95140 -14.78177 -14.66318 -14.60905 -14.26943 -13.79389 -13.44357 -13.40482 -13.17479 -13.01989 -12.83509 -12.75680 -12.59366 -12.53188 -12.31706 -12.14547 -11.98480 -11.86928 -11.49052 -11.32696 -11.10625 -10.98330 -10.84160 -10.47479 -10.34743 -9.99460 -9.84263 -8.94415 -7.94014 -5.20555 -0.42720 0.21784 1.42746 1.46333 1.52200 1.76689 1.88842 2.35972 2.55271 2.84192 3.15012 3.38790 3.58415 3.68979 3.79879 3.86540 3.88389 3.98966 4.11327 4.17488 4.26436 4.33058 4.37399 4.47630 4.49110 4.52151 4.61194 4.62450 4.70599 4.73572 4.80808 4.88211 4.90441 4.91646 5.11210 5.15764 5.20177 5.27214 5.32558 5.36280 5.39065 5.45468 5.49151 5.55212 5.73205 6.14147 6.27997 6.53340 6.83988 7.26382 7.34969 8.10385 8.38136 9.28773 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.007863 B = 0.004756 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3560.332805 B = 5885.753972 C = 8315.809875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.328 6.328 3 C 0.159 3.841 4 C -0.228 4.228 5 C 0.132 3.868 6 N -0.496 5.496 7 C 0.101 3.899 8 C 0.569 3.431 9 O -0.560 6.560 10 N -0.676 5.676 11 C 0.180 3.820 12 C 0.141 3.859 13 N -0.729 5.729 14 C -0.245 4.245 15 H 0.063 0.937 16 C -0.069 4.069 17 N -0.963 5.963 18 Si 0.969 3.031 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.276 1.276 22 C -0.112 4.112 23 C -0.113 4.113 24 C -0.110 4.110 25 C -0.107 4.107 26 C -0.124 4.124 27 C -0.167 4.167 28 H 0.122 0.878 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.185 0.815 32 H 0.203 0.797 33 H 0.410 0.590 34 H 0.022 0.978 35 H 0.018 0.982 36 H 0.376 0.624 37 H 0.251 0.749 38 H 0.083 0.917 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.047 0.953 45 H 0.072 0.928 46 H 0.060 0.940 47 H 0.081 0.919 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.269 -1.341 17.863 22.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.239 6.239 3 C 0.105 3.895 4 C -0.248 4.248 5 C -0.027 4.027 6 N -0.211 5.211 7 C -0.035 4.035 8 C 0.354 3.646 9 O -0.439 6.439 10 N -0.325 5.325 11 C 0.094 3.906 12 C 0.014 3.986 13 N -0.372 5.372 14 C -0.378 4.378 15 H 0.081 0.919 16 C -0.262 4.262 17 N -0.614 5.614 18 Si 0.798 3.202 19 H -0.213 1.213 20 H -0.216 1.216 21 H -0.202 1.202 22 C -0.150 4.150 23 C -0.151 4.151 24 C -0.148 4.148 25 C -0.145 4.145 26 C -0.163 4.163 27 C -0.190 4.190 28 H 0.140 0.860 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.202 0.798 32 H 0.220 0.780 33 H 0.247 0.753 34 H 0.040 0.960 35 H 0.036 0.964 36 H 0.209 0.791 37 H 0.060 0.940 38 H 0.101 0.899 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.079 0.921 47 H 0.099 0.901 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.147 -1.575 17.772 21.584 hybrid contribution -0.665 -0.789 -1.566 1.875 sum -12.813 -2.363 16.206 20.794 Atomic orbital electron populations 1.23548 0.75045 1.06332 1.03201 1.86083 1.24650 1.25617 1.87583 1.19224 0.91319 0.86215 0.92758 1.22777 1.03546 0.91681 1.06825 1.23311 0.88815 0.99180 0.91362 1.67606 1.08906 1.30638 1.13965 1.20856 0.93915 0.89516 0.99243 1.18021 0.86415 0.83931 0.76218 1.90683 1.63989 1.37779 1.51441 1.45657 1.07687 1.07802 1.71392 1.20583 0.78956 0.96892 0.94195 1.21176 0.95310 0.95972 0.86169 1.42290 1.54537 1.39818 1.00563 1.19522 1.20806 1.12014 0.85408 0.91877 1.25434 1.00492 0.99345 1.00894 1.69788 1.36305 1.27295 1.27979 0.85289 0.77853 0.77193 0.79890 1.21327 1.21554 1.20240 1.21711 1.01979 0.92202 0.99139 1.21531 1.00116 0.99888 0.93557 1.21507 1.01707 0.94101 0.97441 1.21418 0.99684 0.96650 0.96736 1.21847 1.01103 1.00081 0.93255 1.21356 0.93569 0.98945 1.05106 0.85988 0.90287 0.90989 0.79752 0.78000 0.75289 0.96020 0.96433 0.79062 0.94032 0.89869 0.92886 0.92196 0.90176 0.90415 0.91052 0.93443 0.90906 0.92112 0.90092 0.84676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.84 113.37 1.12 1.24 16 2 O -0.33 -7.22 10.51 -90.69 -0.95 -8.17 16 3 C 0.16 3.99 6.73 22.75 0.15 4.14 16 4 C -0.23 -4.21 9.11 22.52 0.21 -4.01 16 5 C 0.13 2.81 11.17 84.74 0.95 3.75 16 6 N -0.50 -14.92 9.55 -185.14 -1.77 -16.68 16 7 C 0.10 3.55 6.75 41.85 0.28 3.83 16 8 C 0.57 22.76 7.14 86.89 0.62 23.38 16 9 O -0.56 -25.44 12.62 -3.76 -0.05 -25.49 16 10 N -0.68 -24.65 3.47 -425.44 -1.48 -26.13 16 11 C 0.18 6.39 0.32 3.61 0.00 6.39 16 12 C 0.14 6.51 4.94 86.38 0.43 6.93 16 13 N -0.73 -39.69 5.19 -343.46 -1.78 -41.47 16 14 C -0.25 -14.80 9.99 84.03 0.84 -13.96 16 15 H 0.06 3.77 7.83 -2.91 -0.02 3.75 16 16 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 17 N -0.96 -60.41 13.06 21.65 0.28 -60.13 16 18 Si 0.97 48.68 29.55 68.60 2.03 50.70 16 19 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 20 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 21 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 22 C -0.11 -3.46 4.64 30.60 0.14 -3.32 16 23 C -0.11 -2.64 5.75 30.60 0.18 -2.46 16 24 C -0.11 -2.23 5.92 30.59 0.18 -2.05 16 25 C -0.11 -2.62 5.77 30.59 0.18 -2.45 16 26 C -0.12 -3.83 4.45 30.60 0.14 -3.69 16 27 C -0.17 -5.48 9.60 22.72 0.22 -5.26 16 28 H 0.12 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.08 0.51 7.71 -2.39 -0.02 0.50 16 30 H 0.07 0.59 7.71 -2.39 -0.02 0.57 16 31 H 0.19 1.70 6.45 -2.91 -0.02 1.69 16 32 H 0.20 2.55 8.06 -2.91 -0.02 2.53 16 33 H 0.41 14.28 6.81 -92.71 -0.63 13.64 16 34 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.02 0.91 6.45 -2.39 -0.02 0.90 16 36 H 0.38 21.12 6.46 -92.71 -0.60 20.53 16 37 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 38 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 39 H 0.05 1.93 7.09 -2.39 -0.02 1.91 16 40 H 0.06 1.44 6.95 -2.38 -0.02 1.42 16 41 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.05 1.28 7.53 -2.39 -0.02 1.26 16 45 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.06 2.20 6.05 -2.38 -0.01 2.19 16 47 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 48 H 0.14 4.75 7.64 -2.91 -0.02 4.73 16 Total: -1.00 -78.30 379.06 2.13 -76.17 By element: Atomic # 1 Polarization: 42.66 SS G_CDS: -0.24 Total: 42.42 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 6.09 Total: 8.78 kcal Atomic # 7 Polarization: -139.67 SS G_CDS: -4.74 Total: -144.41 kcal Atomic # 8 Polarization: -32.65 SS G_CDS: -1.00 Total: -33.66 kcal Atomic # 14 Polarization: 48.68 SS G_CDS: 2.03 Total: 50.70 kcal Total: -78.30 2.13 -76.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506517963.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.988 kcal (2) G-P(sol) polarization free energy of solvation -78.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds