Wall clock time and date at job start Tue Mar 31 2020 17:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99558 * 2 1 4 4 C 1.52999 * 109.47127 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46674 * 65.00133 * 4 3 2 6 6 C 1.36939 * 119.99932 * 269.99630 * 5 4 3 7 7 H 1.08006 * 119.99405 * 141.45973 * 6 5 4 8 8 C 1.38802 * 120.00290 * 321.46505 * 6 5 4 9 9 N 1.31626 * 119.99693 * 338.82067 * 8 6 5 10 10 Si 1.86800 * 120.00311 * 158.82525 * 8 6 5 11 11 H 1.48503 * 109.46934 * 359.97438 * 10 8 6 12 12 H 1.48505 * 109.47168 * 119.99854 * 10 8 6 13 13 H 1.48500 * 109.47115 * 239.99862 * 10 8 6 14 14 C 1.46500 * 119.99900 * 90.00245 * 5 4 3 15 15 C 1.53005 * 109.46759 * 264.70589 * 14 5 4 16 16 N 1.46500 * 109.46759 * 179.97438 * 15 14 5 17 17 C 1.34781 * 120.00191 * 179.97438 * 16 15 14 18 18 O 1.21514 * 119.99245 * 0.02562 * 17 16 15 19 19 C 1.48144 * 120.00450 * 180.02562 * 17 16 15 20 20 C 1.39842 * 120.92083 * 0.02562 * 19 17 16 21 21 C 1.38126 * 118.99859 * 179.97438 * 20 19 17 22 22 N 1.31824 * 120.90180 * 359.97438 * 21 20 19 23 23 C 1.31795 * 122.04655 * 0.02562 * 22 21 20 24 24 C 1.50706 * 119.54845 * 179.97438 * 23 22 21 25 25 C 1.53005 * 117.49658 * 163.61982 * 24 23 22 26 26 C 1.52997 * 117.49800 * 95.00073 * 24 23 22 27 27 C 1.38170 * 120.89912 * 359.73149 * 23 22 21 28 28 H 1.08994 * 109.47316 * 60.00337 * 1 2 3 29 29 H 1.09005 * 109.46972 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47257 * 299.99733 * 1 2 3 31 31 H 1.09008 * 109.47173 * 60.00124 * 3 2 1 32 32 H 1.09003 * 109.47176 * 300.00012 * 3 2 1 33 33 H 1.08997 * 109.47209 * 305.00316 * 4 3 2 34 34 H 1.08998 * 109.47463 * 184.99673 * 4 3 2 35 35 H 0.97004 * 119.99431 * 180.02562 * 9 8 6 36 36 H 1.09006 * 109.47400 * 144.70819 * 14 5 4 37 37 H 1.09002 * 109.47507 * 24.70696 * 14 5 4 38 38 H 1.08996 * 109.47157 * 299.99386 * 15 14 5 39 39 H 1.08995 * 109.47046 * 60.00676 * 15 14 5 40 40 H 0.97002 * 120.00733 * 0.02562 * 16 15 14 41 41 H 1.07996 * 120.49761 * 0.02562 * 20 19 17 42 42 H 1.08006 * 119.54648 * 180.02562 * 21 20 19 43 43 H 1.08996 * 115.54928 * 309.32429 * 24 23 22 44 44 H 1.09006 * 117.49856 * 359.97438 * 25 24 23 45 45 H 1.09000 * 117.49880 * 145.01693 * 25 24 23 46 46 H 1.09002 * 117.49638 * 214.97355 * 26 24 23 47 47 H 1.08996 * 117.50394 * 359.97044 * 26 24 23 48 48 H 1.07998 * 120.50642 * 180.29484 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9765 0.5642 -1.2509 6 6 4.0978 -0.7973 -1.3345 7 1 3.8084 -1.3106 -2.2397 8 6 4.5925 -1.5175 -0.2560 9 7 5.3195 -0.9141 0.6604 10 14 4.2266 -3.3431 -0.1053 11 1 3.3946 -3.7779 -1.2560 12 1 5.5015 -4.1047 -0.0998 13 1 3.4924 -3.5980 1.1601 14 6 4.2881 1.4001 -2.4130 15 6 3.0606 1.4872 -3.3223 16 7 3.3720 2.3236 -4.4841 17 6 2.4345 2.5429 -5.4273 18 8 1.3309 2.0472 -5.3137 19 6 2.7495 3.3882 -6.6024 20 6 4.0133 3.9677 -6.7527 21 6 4.2641 4.7484 -7.8642 22 7 3.3322 4.9491 -8.7748 23 6 2.1287 4.4219 -8.6717 24 6 1.1059 4.6889 -9.7459 25 6 -0.1201 3.7749 -9.7969 26 6 0.9693 3.6538 -10.8643 27 6 1.7935 3.6238 -7.5949 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6885 1.8464 0.8901 32 1 1.6885 1.8464 -0.8900 33 1 3.8507 0.5687 0.8426 34 1 3.9783 2.1767 0.0902 35 1 5.6655 -1.4176 1.4140 36 1 5.1186 0.9600 -2.9651 37 1 4.5638 2.4000 -2.0780 38 1 2.7850 0.4873 -3.6574 39 1 2.2302 1.9274 -2.7704 40 1 4.2531 2.7190 -4.5750 41 1 4.7818 3.8065 -6.0113 42 1 5.2372 5.1999 -7.9894 43 1 0.9640 5.7369 -10.0099 44 1 -0.1866 2.9801 -9.0537 45 1 -1.0688 4.2215 -10.0943 46 1 0.7372 4.0208 -11.8641 47 1 1.6195 2.7800 -10.8235 48 1 0.8069 3.1911 -7.5192 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508046657.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:07 Heat of formation + Delta-G solvation = 7.326115 kcal Electronic energy + Delta-G solvation = -28180.117265 eV Core-core repulsion = 24237.125788 eV Total energy + Delta-G solvation = -3942.991477 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.91718 -39.20965 -37.31905 -37.22419 -35.82836 -34.33487 -32.91013 -31.43998 -31.11424 -29.48516 -27.56063 -25.64504 -25.16707 -24.69756 -23.67535 -22.63555 -21.93783 -21.57969 -20.55759 -19.92471 -18.05720 -17.02168 -16.77188 -16.02550 -15.78743 -15.70871 -15.45863 -15.29995 -15.10351 -14.87349 -14.64156 -14.42128 -14.07047 -13.98678 -13.64790 -13.54217 -13.23695 -12.68082 -12.56271 -12.06776 -11.98430 -11.82300 -11.65854 -11.21858 -11.07610 -10.91535 -10.80628 -10.80279 -10.72304 -10.61928 -10.29122 -10.07766 -10.04815 -9.97273 -9.74603 -9.64352 -9.20973 -8.92842 -8.70815 -8.42419 -6.60656 -5.76794 -3.34593 0.51328 0.78183 2.81820 3.12809 3.36957 3.42838 3.50980 3.55717 3.63163 3.86802 4.38608 4.43715 4.53997 4.57429 4.64361 4.69132 4.70963 4.78767 4.87479 5.16425 5.30266 5.34279 5.43875 5.50439 5.51356 5.55924 5.71832 5.74365 5.76718 5.79617 5.80031 5.85487 5.90138 6.05424 6.14006 6.23163 6.26191 6.30720 6.49321 6.58710 6.62308 6.65622 6.88379 7.56047 7.59919 7.65128 7.86891 8.07036 8.21852 8.55505 9.18358 9.81488 10.35636 11.25761 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016521 B = 0.002388 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.355919 B =11724.463386 C =12132.215181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.044 3.956 4 C 0.143 3.857 5 N -0.570 5.570 6 C -0.246 4.246 7 H 0.057 0.943 8 C 0.022 3.978 9 N -0.891 5.891 10 Si 0.900 3.100 11 H -0.276 1.276 12 H -0.293 1.293 13 H -0.288 1.288 14 C 0.138 3.862 15 C 0.095 3.905 16 N -0.713 5.713 17 C 0.550 3.450 18 O -0.532 6.532 19 C -0.077 4.077 20 C -0.148 4.148 21 C 0.101 3.899 22 N -0.467 5.467 23 C 0.154 3.846 24 C -0.109 4.109 25 C -0.174 4.174 26 C -0.161 4.161 27 C -0.115 4.115 28 H 0.030 0.970 29 H 0.075 0.925 30 H 0.026 0.974 31 H 0.025 0.975 32 H 0.029 0.971 33 H 0.103 0.897 34 H 0.041 0.959 35 H 0.253 0.747 36 H 0.053 0.947 37 H 0.041 0.959 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.397 0.603 41 H 0.142 0.858 42 H 0.164 0.836 43 H 0.123 0.877 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.101 0.899 47 H 0.095 0.905 48 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.316 12.854 -15.608 20.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C -0.035 4.035 4 C 0.017 3.983 5 N -0.289 5.289 6 C -0.376 4.376 7 H 0.075 0.925 8 C -0.178 4.178 9 N -0.534 5.534 10 Si 0.730 3.270 11 H -0.201 1.201 12 H -0.221 1.221 13 H -0.214 1.214 14 C 0.010 3.990 15 C -0.030 4.030 16 N -0.364 5.364 17 C 0.335 3.665 18 O -0.409 6.409 19 C -0.088 4.088 20 C -0.168 4.168 21 C -0.056 4.056 22 N -0.177 5.177 23 C 0.016 3.984 24 C -0.128 4.128 25 C -0.211 4.211 26 C -0.198 4.198 27 C -0.136 4.136 28 H 0.048 0.952 29 H 0.093 0.907 30 H 0.045 0.955 31 H 0.043 0.957 32 H 0.047 0.953 33 H 0.121 0.879 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.232 0.768 41 H 0.160 0.840 42 H 0.181 0.819 43 H 0.141 0.859 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.120 0.880 47 H 0.114 0.886 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.680 12.733 -16.015 21.234 hybrid contribution -0.261 -0.959 0.944 1.371 sum -5.940 11.774 -15.072 20.026 Atomic orbital electron populations 1.22641 0.84147 1.01542 0.98476 1.88205 1.16633 1.27535 1.94828 1.23493 0.98791 0.84281 0.96957 1.21074 0.87546 0.96640 0.93045 1.43525 1.75488 1.02897 1.07000 1.18850 1.36281 0.81273 1.01163 0.92511 1.25068 0.95994 0.97880 0.98881 1.69994 1.33685 1.35884 1.13821 0.86294 0.77401 0.85399 0.77948 1.20126 1.22075 1.21420 1.21001 0.93130 0.94874 0.90006 1.22565 1.01398 0.94108 0.84970 1.46047 1.15243 1.51660 1.23401 1.18165 0.85021 0.80954 0.82406 1.90781 1.22233 1.50495 1.77432 1.20520 0.94613 0.97914 0.95797 1.22405 0.96638 0.97919 0.99879 1.22731 0.98372 0.95201 0.89300 1.67254 1.00979 1.20821 1.28629 1.20312 0.91418 0.93162 0.93479 1.20758 0.96337 0.98019 0.97674 1.23154 0.93335 1.02258 1.02364 1.22978 1.02015 1.00410 0.94440 1.22119 1.00885 0.97635 0.92934 0.95161 0.90689 0.95548 0.95736 0.95306 0.87933 0.94034 0.93711 0.92871 0.94078 0.91211 0.92057 0.76845 0.84031 0.81897 0.85872 0.87942 0.87805 0.88029 0.88618 0.83390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.35 -7.88 10.18 -35.23 -0.36 -8.24 16 3 C 0.04 0.89 6.28 37.16 0.23 1.12 16 4 C 0.14 3.23 5.76 -4.04 -0.02 3.20 16 5 N -0.57 -13.41 2.41 -173.23 -0.42 -13.83 16 6 C -0.25 -6.57 8.95 -15.06 -0.13 -6.71 16 7 H 0.06 1.56 7.92 -52.48 -0.42 1.14 16 8 C 0.02 0.60 4.95 -17.43 -0.09 0.51 16 9 N -0.89 -25.20 11.53 55.49 0.64 -24.56 16 10 Si 0.90 22.13 29.60 -169.99 -5.03 17.10 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 14 C 0.14 2.61 5.83 -4.04 -0.02 2.59 16 15 C 0.09 1.69 5.97 -4.04 -0.02 1.67 16 16 N -0.71 -10.11 5.51 -61.15 -0.34 -10.45 16 17 C 0.55 8.41 7.80 -12.19 -0.10 8.31 16 18 O -0.53 -10.16 16.45 5.35 0.09 -10.07 16 19 C -0.08 -0.96 5.91 -104.65 -0.62 -1.57 16 20 C -0.15 -1.41 9.62 -39.02 -0.38 -1.79 16 21 C 0.10 0.93 11.17 -17.60 -0.20 0.74 16 22 N -0.47 -5.22 10.25 -9.52 -0.10 -5.32 16 23 C 0.15 1.69 6.46 -82.63 -0.53 1.16 16 24 C -0.11 -0.95 6.22 -91.77 -0.57 -1.52 16 25 C -0.17 -1.30 9.79 -26.73 -0.26 -1.56 16 26 C -0.16 -1.21 10.23 -26.73 -0.27 -1.49 16 27 C -0.12 -1.38 8.93 -39.02 -0.35 -1.72 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 32 H 0.03 0.56 6.48 -51.93 -0.34 0.23 16 33 H 0.10 2.68 5.58 -51.93 -0.29 2.39 16 34 H 0.04 0.84 7.86 -51.93 -0.41 0.44 16 35 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 36 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 37 H 0.04 0.70 7.83 -51.93 -0.41 0.29 16 38 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.06 1.17 6.48 -51.93 -0.34 0.84 16 40 H 0.40 4.33 6.62 -40.82 -0.27 4.06 16 41 H 0.14 0.97 6.54 -52.49 -0.34 0.63 16 42 H 0.16 0.99 8.06 -52.48 -0.42 0.56 16 43 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.10 0.83 6.38 -51.93 -0.33 0.50 16 45 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.15 1.76 5.93 -52.49 -0.31 1.44 16 LS Contribution 397.45 15.07 5.99 5.99 Total: -1.00 -32.92 397.45 -8.98 -41.89 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -7.23 Total: 2.93 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -2.22 Total: 4.56 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.21 Total: -54.16 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.27 Total: -18.31 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.10 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.92 -8.98 -41.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508046657.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.220 kcal (2) G-P(sol) polarization free energy of solvation -32.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds