Wall clock time and date at job start Tue Mar 31 2020 17:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99558 * 2 1 4 4 C 1.52999 * 109.47127 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46674 * 65.00133 * 4 3 2 6 6 C 1.36939 * 119.99932 * 269.99630 * 5 4 3 7 7 H 1.08006 * 119.99405 * 141.45973 * 6 5 4 8 8 C 1.38802 * 120.00290 * 321.46505 * 6 5 4 9 9 N 1.31626 * 119.99693 * 338.82067 * 8 6 5 10 10 Si 1.86800 * 120.00311 * 158.82525 * 8 6 5 11 11 H 1.48503 * 109.46934 * 359.97438 * 10 8 6 12 12 H 1.48505 * 109.47168 * 119.99854 * 10 8 6 13 13 H 1.48500 * 109.47115 * 239.99862 * 10 8 6 14 14 C 1.46500 * 119.99900 * 90.00245 * 5 4 3 15 15 C 1.53005 * 109.46759 * 264.70589 * 14 5 4 16 16 N 1.46500 * 109.46759 * 179.97438 * 15 14 5 17 17 C 1.34781 * 120.00191 * 179.97438 * 16 15 14 18 18 O 1.21514 * 119.99245 * 0.02562 * 17 16 15 19 19 C 1.48144 * 120.00450 * 180.02562 * 17 16 15 20 20 C 1.39842 * 120.92083 * 0.02562 * 19 17 16 21 21 C 1.38126 * 118.99859 * 179.97438 * 20 19 17 22 22 N 1.31824 * 120.90180 * 359.97438 * 21 20 19 23 23 C 1.31795 * 122.04655 * 0.02562 * 22 21 20 24 24 C 1.50706 * 119.54845 * 179.97438 * 23 22 21 25 25 C 1.53005 * 117.49658 * 163.61982 * 24 23 22 26 26 C 1.52997 * 117.49800 * 95.00073 * 24 23 22 27 27 C 1.38170 * 120.89912 * 359.73149 * 23 22 21 28 28 H 1.08994 * 109.47316 * 60.00337 * 1 2 3 29 29 H 1.09005 * 109.46972 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47257 * 299.99733 * 1 2 3 31 31 H 1.09008 * 109.47173 * 60.00124 * 3 2 1 32 32 H 1.09003 * 109.47176 * 300.00012 * 3 2 1 33 33 H 1.08997 * 109.47209 * 305.00316 * 4 3 2 34 34 H 1.08998 * 109.47463 * 184.99673 * 4 3 2 35 35 H 0.97004 * 119.99431 * 180.02562 * 9 8 6 36 36 H 1.09006 * 109.47400 * 144.70819 * 14 5 4 37 37 H 1.09002 * 109.47507 * 24.70696 * 14 5 4 38 38 H 1.08996 * 109.47157 * 299.99386 * 15 14 5 39 39 H 1.08995 * 109.47046 * 60.00676 * 15 14 5 40 40 H 0.97002 * 120.00733 * 0.02562 * 16 15 14 41 41 H 1.07996 * 120.49761 * 0.02562 * 20 19 17 42 42 H 1.08006 * 119.54648 * 180.02562 * 21 20 19 43 43 H 1.08996 * 115.54928 * 309.32429 * 24 23 22 44 44 H 1.09006 * 117.49856 * 359.97438 * 25 24 23 45 45 H 1.09000 * 117.49880 * 145.01693 * 25 24 23 46 46 H 1.09002 * 117.49638 * 214.97355 * 26 24 23 47 47 H 1.08996 * 117.50394 * 359.97044 * 26 24 23 48 48 H 1.07998 * 120.50642 * 180.29484 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9765 0.5642 -1.2509 6 6 4.0978 -0.7973 -1.3345 7 1 3.8084 -1.3106 -2.2397 8 6 4.5925 -1.5175 -0.2560 9 7 5.3195 -0.9141 0.6604 10 14 4.2266 -3.3431 -0.1053 11 1 3.3946 -3.7779 -1.2560 12 1 5.5015 -4.1047 -0.0998 13 1 3.4924 -3.5980 1.1601 14 6 4.2881 1.4001 -2.4130 15 6 3.0606 1.4872 -3.3223 16 7 3.3720 2.3236 -4.4841 17 6 2.4345 2.5429 -5.4273 18 8 1.3309 2.0472 -5.3137 19 6 2.7495 3.3882 -6.6024 20 6 4.0133 3.9677 -6.7527 21 6 4.2641 4.7484 -7.8642 22 7 3.3322 4.9491 -8.7748 23 6 2.1287 4.4219 -8.6717 24 6 1.1059 4.6889 -9.7459 25 6 -0.1201 3.7749 -9.7969 26 6 0.9693 3.6538 -10.8643 27 6 1.7935 3.6238 -7.5949 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6885 1.8464 0.8901 32 1 1.6885 1.8464 -0.8900 33 1 3.8507 0.5687 0.8426 34 1 3.9783 2.1767 0.0902 35 1 5.6655 -1.4176 1.4140 36 1 5.1186 0.9600 -2.9651 37 1 4.5638 2.4000 -2.0780 38 1 2.7850 0.4873 -3.6574 39 1 2.2302 1.9274 -2.7704 40 1 4.2531 2.7190 -4.5750 41 1 4.7818 3.8065 -6.0113 42 1 5.2372 5.1999 -7.9894 43 1 0.9640 5.7369 -10.0099 44 1 -0.1866 2.9801 -9.0537 45 1 -1.0688 4.2215 -10.0943 46 1 0.7372 4.0208 -11.8641 47 1 1.6195 2.7800 -10.8235 48 1 0.8069 3.1911 -7.5192 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508046657.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:07 Heat of formation + Delta-G solvation = -13.992330 kcal Electronic energy + Delta-G solvation = -28181.041702 eV Core-core repulsion = 24237.125788 eV Total energy + Delta-G solvation = -3943.915914 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.82412 -40.36574 -38.93254 -37.91078 -37.44633 -35.83840 -33.94400 -33.24449 -31.95237 -31.02584 -29.20034 -27.17707 -26.34900 -25.70167 -25.05536 -23.49476 -23.03043 -22.63284 -22.17934 -21.11395 -19.09971 -18.62007 -17.94684 -17.39465 -16.89373 -16.81885 -16.66449 -16.53318 -16.42581 -16.34711 -15.82173 -15.65691 -15.38693 -15.24276 -15.03928 -14.75445 -14.66509 -14.25251 -13.67008 -13.43557 -13.29737 -13.02701 -12.75494 -12.72141 -12.47931 -12.40846 -12.35524 -12.28538 -11.95514 -11.74410 -11.72636 -11.55100 -11.47271 -11.40201 -11.00638 -10.56100 -10.46334 -10.39799 -10.12417 -9.95708 -8.54864 -7.79723 -5.39931 -0.40619 -0.00508 1.44409 1.49703 1.57969 1.73724 1.93220 2.56141 2.62472 2.86567 3.16778 3.18086 3.33169 3.43927 3.68442 3.77644 3.84507 3.91745 3.99723 4.10819 4.17072 4.20055 4.25374 4.39563 4.44820 4.49718 4.55497 4.66554 4.69308 4.70906 4.75383 4.80001 4.80530 4.88560 4.91334 4.95197 5.03423 5.08354 5.14632 5.16407 5.20946 5.39776 5.54660 5.71307 5.78545 6.40581 6.45607 6.63893 6.86324 7.04455 7.22339 7.88460 8.37824 9.18145 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016521 B = 0.002388 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.355919 B =11724.463386 C =12132.215181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.396 6.396 3 C 0.051 3.949 4 C 0.141 3.859 5 N -0.586 5.586 6 C -0.243 4.243 7 H 0.042 0.958 8 C -0.021 4.021 9 N -0.914 5.914 10 Si 0.945 3.055 11 H -0.277 1.277 12 H -0.290 1.290 13 H -0.293 1.293 14 C 0.142 3.858 15 C 0.117 3.883 16 N -0.699 5.699 17 C 0.550 3.450 18 O -0.578 6.578 19 C -0.094 4.094 20 C -0.137 4.137 21 C 0.104 3.896 22 N -0.481 5.481 23 C 0.148 3.852 24 C -0.121 4.121 25 C -0.171 4.171 26 C -0.155 4.155 27 C -0.129 4.129 28 H 0.035 0.965 29 H 0.082 0.918 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.035 0.965 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.250 0.750 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.035 0.965 39 H 0.049 0.951 40 H 0.416 0.584 41 H 0.172 0.828 42 H 0.201 0.799 43 H 0.133 0.867 44 H 0.090 0.910 45 H 0.122 0.878 46 H 0.121 0.879 47 H 0.085 0.915 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.915 14.644 -16.827 22.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C -0.028 4.028 4 C 0.015 3.985 5 N -0.306 5.306 6 C -0.373 4.373 7 H 0.059 0.941 8 C -0.218 4.218 9 N -0.559 5.559 10 Si 0.775 3.225 11 H -0.202 1.202 12 H -0.217 1.217 13 H -0.220 1.220 14 C 0.015 3.985 15 C -0.009 4.009 16 N -0.351 5.351 17 C 0.337 3.663 18 O -0.458 6.458 19 C -0.105 4.105 20 C -0.157 4.157 21 C -0.053 4.053 22 N -0.191 5.191 23 C 0.012 3.988 24 C -0.140 4.140 25 C -0.208 4.208 26 C -0.193 4.193 27 C -0.150 4.150 28 H 0.054 0.946 29 H 0.101 0.899 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.054 0.946 39 H 0.068 0.932 40 H 0.254 0.746 41 H 0.189 0.811 42 H 0.217 0.783 43 H 0.151 0.849 44 H 0.108 0.892 45 H 0.140 0.860 46 H 0.139 0.861 47 H 0.104 0.896 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.262 14.552 -17.261 23.182 hybrid contribution -0.402 -1.447 1.257 1.959 sum -5.665 13.105 -16.004 21.447 Atomic orbital electron populations 1.22802 0.81791 1.02607 0.99824 1.88129 1.19375 1.28818 1.95158 1.23358 0.97138 0.83968 0.98319 1.21030 0.89304 0.96723 0.91420 1.43671 1.75986 1.02438 1.08486 1.18863 1.34908 0.83115 1.00428 0.94058 1.25548 0.96630 1.00503 0.99145 1.70078 1.34901 1.36645 1.14232 0.85575 0.77091 0.82536 0.77293 1.20241 1.21682 1.22022 1.21046 0.93233 0.95536 0.88651 1.22014 1.00399 0.92837 0.85660 1.45770 1.16145 1.50961 1.22203 1.18607 0.84265 0.80458 0.82922 1.90755 1.24163 1.52393 1.78493 1.20332 0.96318 0.98908 0.94938 1.22703 0.95815 0.96636 1.00543 1.23372 0.99285 0.94302 0.88337 1.67344 1.01250 1.21068 1.29390 1.20568 0.91982 0.92712 0.93581 1.20867 0.96516 0.98820 0.97804 1.23201 0.93938 1.01653 1.02033 1.23041 1.01530 0.99552 0.95152 1.22149 1.00740 0.98450 0.93628 0.94620 0.89915 0.93224 0.93362 0.94652 0.91508 0.91910 0.94102 0.92937 0.91146 0.94612 0.93230 0.74582 0.81077 0.78272 0.84895 0.89170 0.85970 0.86073 0.89640 0.84297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 11.01 113.37 1.25 2.13 16 2 O -0.40 -17.50 10.18 -148.98 -1.52 -19.02 16 3 C 0.05 2.00 6.28 71.98 0.45 2.45 16 4 C 0.14 6.29 5.76 86.38 0.50 6.79 16 5 N -0.59 -27.44 2.41 -701.98 -1.69 -29.13 16 6 C -0.24 -13.10 8.95 84.03 0.75 -12.35 16 7 H 0.04 2.32 7.92 -2.91 -0.02 2.30 16 8 C -0.02 -1.16 4.95 84.86 0.42 -0.74 16 9 N -0.91 -52.31 11.53 21.65 0.25 -52.06 16 10 Si 0.95 46.10 29.60 68.60 2.03 48.13 16 11 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 12 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 13 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 14 C 0.14 5.22 5.83 86.38 0.50 5.73 16 15 C 0.12 4.14 5.97 86.38 0.52 4.66 16 16 N -0.70 -18.99 5.51 -465.68 -2.57 -21.56 16 17 C 0.55 16.71 7.80 86.87 0.68 17.38 16 18 O -0.58 -22.67 16.45 -3.76 -0.06 -22.73 16 19 C -0.09 -2.24 5.91 -19.88 -0.12 -2.35 16 20 C -0.14 -2.24 9.62 22.63 0.22 -2.02 16 21 C 0.10 1.60 11.17 84.67 0.95 2.55 16 22 N -0.48 -9.78 10.25 -184.04 -1.89 -11.66 16 23 C 0.15 3.13 6.46 42.55 0.27 3.40 16 24 C -0.12 -1.99 6.22 -11.54 -0.07 -2.07 16 25 C -0.17 -2.43 9.79 30.60 0.30 -2.13 16 26 C -0.16 -2.16 10.23 30.59 0.31 -1.84 16 27 C -0.13 -3.08 8.93 22.63 0.20 -2.87 16 28 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.04 1.34 6.48 -2.39 -0.02 1.32 16 33 H 0.07 3.52 5.58 -2.39 -0.01 3.51 16 34 H 0.06 2.45 7.86 -2.39 -0.02 2.43 16 35 H 0.25 13.90 8.31 -92.70 -0.77 13.13 16 36 H 0.05 1.94 8.08 -2.38 -0.02 1.92 16 37 H 0.07 2.19 7.83 -2.39 -0.02 2.17 16 38 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.05 1.88 6.48 -2.39 -0.02 1.87 16 40 H 0.42 7.98 6.62 -92.71 -0.61 7.37 16 41 H 0.17 1.67 6.54 -2.91 -0.02 1.65 16 42 H 0.20 1.53 8.06 -2.91 -0.02 1.50 16 43 H 0.13 1.88 8.14 -2.39 -0.02 1.87 16 44 H 0.09 1.51 6.38 -2.38 -0.02 1.49 16 45 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.12 1.18 8.14 -2.39 -0.02 1.17 16 47 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.14 3.47 5.93 -2.91 -0.02 3.46 16 Total: -1.00 -72.98 397.45 2.05 -70.93 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.36 Total: 18.37 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: 7.13 Total: 18.72 kcal Atomic # 7 Polarization: -108.51 SS G_CDS: -5.89 Total: -114.41 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -1.58 Total: -41.75 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -72.98 2.05 -70.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508046657.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.935 kcal (2) G-P(sol) polarization free energy of solvation -72.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds