Wall clock time and date at job start Tue Mar 31 2020 17:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34780 * 119.99850 * 2 1 4 4 O 1.21277 * 119.99985 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99667 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.46695 * 180.02562 * 5 3 2 7 7 N 1.46501 * 109.46878 * 179.97438 * 6 5 3 8 8 C 1.34780 * 119.99850 * 179.97438 * 7 6 5 9 9 O 1.21588 * 120.00397 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99755 * 180.02562 * 8 7 6 11 11 C 1.46502 * 119.99887 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.47018 * 34.99305 * 11 10 8 13 13 C 1.52994 * 109.47147 * 154.99570 * 11 10 8 14 14 C 1.53001 * 109.47367 * 294.99987 * 13 11 10 15 15 C 1.50697 * 109.46995 * 180.02562 * 14 13 11 16 16 H 1.07991 * 120.00449 * 359.72153 * 15 14 13 17 17 C 1.37885 * 119.99686 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.72095 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.72528 * 17 15 14 20 20 H 1.48498 * 109.47416 * 59.99812 * 19 17 15 21 21 H 1.48508 * 109.46609 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46903 * 299.99397 * 19 17 15 23 23 C 1.50698 * 109.47051 * 274.99593 * 11 10 8 24 24 C 1.38241 * 119.99949 * 319.72756 * 23 11 10 25 25 C 1.38231 * 119.99869 * 179.80863 * 24 23 11 26 26 C 1.38238 * 120.00136 * 0.39613 * 25 24 23 27 27 C 1.38233 * 120.00010 * 359.85627 * 26 25 24 28 28 C 1.38233 * 119.99753 * 359.95488 * 27 26 25 29 29 H 1.09006 * 109.46488 * 299.99936 * 1 2 3 30 30 H 1.08998 * 109.46952 * 59.99677 * 1 2 3 31 31 H 1.08997 * 109.47011 * 180.02562 * 1 2 3 32 32 H 0.96996 * 120.00466 * 180.02562 * 2 1 3 33 33 H 1.08993 * 109.47239 * 59.99814 * 5 3 2 34 34 H 1.09005 * 109.46615 * 299.99269 * 5 3 2 35 35 H 1.08999 * 109.47933 * 59.99790 * 6 5 3 36 36 H 1.08998 * 109.47406 * 299.99376 * 6 5 3 37 37 H 0.96996 * 120.00466 * 359.97438 * 7 6 5 38 38 H 0.96991 * 120.00054 * 359.97438 * 10 8 7 39 39 H 1.08998 * 109.47353 * 174.99766 * 13 11 10 40 40 H 1.09006 * 109.47395 * 55.00021 * 13 11 10 41 41 H 1.08998 * 109.47065 * 59.99602 * 14 13 11 42 42 H 1.09001 * 109.46892 * 299.99866 * 14 13 11 43 43 H 0.97000 * 119.99651 * 180.02562 * 18 17 15 44 44 H 1.07998 * 120.00120 * 359.97438 * 24 23 11 45 45 H 1.08001 * 120.00028 * 180.23180 * 25 24 23 46 46 H 1.08001 * 120.00168 * 179.83155 * 26 25 24 47 47 H 1.07993 * 120.00215 * 179.97438 * 27 26 25 48 48 H 1.08003 * 120.00000 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1672 -0.0006 6 6 4.1559 2.6097 0.0002 7 7 5.6209 2.6097 0.0002 8 6 6.2947 3.7770 0.0003 9 8 5.6868 4.8300 -0.0001 10 7 7.6425 3.7769 -0.0001 11 6 8.3750 5.0457 0.0006 12 1 7.8278 5.7808 0.5906 13 6 9.7624 4.8333 0.6096 14 6 9.6189 4.4480 2.0833 15 6 10.9854 4.2394 2.6833 16 1 11.8678 4.3643 2.0734 17 6 11.1090 3.8840 4.0098 18 7 10.0344 3.7324 4.7528 19 14 12.8026 3.6179 4.7516 20 1 13.5940 4.8695 4.6403 21 1 12.6633 3.2452 6.1824 22 1 13.4968 2.5267 4.0217 23 6 8.5185 5.5436 -1.4145 24 6 8.7983 4.6542 -2.4352 25 6 8.9261 5.1104 -3.7338 26 6 8.7821 6.4571 -4.0106 27 6 8.5075 7.3472 -2.9893 28 6 8.3759 6.8905 -1.6912 29 1 -0.3632 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.9501 -0.8400 -0.0004 33 1 4.0089 0.6536 -0.8907 34 1 4.0095 0.6532 0.8893 35 1 3.7929 3.1231 0.8906 36 1 3.7923 3.1241 -0.8893 37 1 6.1059 1.7697 0.0002 38 1 8.1275 2.9370 -0.0002 39 1 10.3393 5.7545 0.5295 40 1 10.2762 4.0351 0.0738 41 1 9.0419 3.5267 2.1635 42 1 9.1052 5.2462 2.6192 43 1 10.1214 3.4827 5.6861 44 1 8.9145 3.6026 -2.2184 45 1 9.1409 4.4151 -4.5318 46 1 8.8846 6.8139 -5.0248 47 1 8.3954 8.3993 -3.2054 48 1 8.1618 7.5859 -0.8931 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001564832340.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:59 Heat of formation + Delta-G solvation = -84.931460 kcal Electronic energy + Delta-G solvation = -27873.454668 eV Core-core repulsion = 23926.462603 eV Total energy + Delta-G solvation = -3946.992065 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.37967 -40.72286 -39.89205 -37.33516 -36.14526 -35.61127 -35.11828 -33.26368 -31.93825 -31.75353 -31.40075 -28.34616 -27.65395 -25.39374 -24.31993 -23.46662 -22.60741 -22.17961 -21.53702 -21.26970 -19.54139 -18.51340 -18.22313 -17.85273 -17.19147 -17.03666 -16.81626 -16.56308 -16.32164 -15.93105 -15.84891 -15.29690 -15.17101 -14.95374 -14.65896 -14.52365 -14.30682 -14.19891 -13.94473 -13.78473 -13.66810 -13.36885 -13.15068 -12.85740 -12.81038 -12.52966 -12.48631 -12.43205 -12.12343 -11.89131 -11.75379 -11.41217 -11.36264 -11.19991 -11.03204 -10.53158 -10.36286 -10.14690 -9.80910 -9.73790 -9.53665 -8.16691 -6.27947 0.48810 0.56694 1.41982 1.44576 1.52291 1.58842 1.63286 2.20100 2.36918 2.42845 2.94210 3.16539 3.37756 3.65975 3.85439 4.01225 4.03527 4.08925 4.19100 4.27020 4.33088 4.39010 4.46317 4.55347 4.61387 4.68392 4.69444 4.78648 4.86192 4.91997 4.95867 5.01522 5.12269 5.20531 5.22099 5.42816 5.45527 5.49035 5.53759 5.62625 5.65466 5.70872 5.83868 5.87679 6.06243 6.17997 6.26410 6.53096 6.89122 7.14634 7.24887 7.41299 7.63473 8.94277 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.007069 B = 0.003115 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3960.230279 B = 8987.832912 C =12320.293578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.720 5.720 3 C 0.510 3.490 4 O -0.591 6.591 5 C -0.137 4.137 6 C 0.158 3.842 7 N -0.730 5.730 8 C 0.700 3.300 9 O -0.638 6.638 10 N -0.718 5.718 11 C 0.212 3.788 12 H 0.056 0.944 13 C -0.093 4.093 14 C 0.033 3.967 15 C -0.540 4.540 16 H 0.063 0.937 17 C 0.001 3.999 18 N -0.933 5.933 19 Si 0.962 3.038 20 H -0.271 1.271 21 H -0.287 1.287 22 H -0.262 1.262 23 C -0.099 4.099 24 C -0.114 4.114 25 C -0.125 4.125 26 C -0.128 4.128 27 C -0.126 4.126 28 C -0.131 4.131 29 H 0.045 0.955 30 H 0.048 0.952 31 H 0.113 0.887 32 H 0.423 0.577 33 H 0.139 0.861 34 H 0.130 0.870 35 H 0.039 0.961 36 H 0.050 0.950 37 H 0.415 0.585 38 H 0.409 0.591 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.006 0.994 42 H -0.024 1.024 43 H 0.262 0.738 44 H 0.130 0.870 45 H 0.147 0.853 46 H 0.148 0.852 47 H 0.140 0.860 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.320 -11.552 -17.383 23.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.373 5.373 3 C 0.297 3.703 4 O -0.472 6.472 5 C -0.177 4.177 6 C 0.033 3.967 7 N -0.388 5.388 8 C 0.400 3.600 9 O -0.519 6.519 10 N -0.372 5.372 11 C 0.106 3.894 12 H 0.074 0.926 13 C -0.131 4.131 14 C -0.004 4.004 15 C -0.578 4.578 16 H 0.081 0.919 17 C -0.197 4.197 18 N -0.573 5.573 19 Si 0.786 3.214 20 H -0.196 1.196 21 H -0.212 1.212 22 H -0.187 1.187 23 C -0.100 4.100 24 C -0.132 4.132 25 C -0.143 4.143 26 C -0.146 4.146 27 C -0.144 4.144 28 C -0.150 4.150 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.131 0.869 32 H 0.260 0.740 33 H 0.157 0.843 34 H 0.148 0.852 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.252 0.748 38 H 0.245 0.755 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.024 0.976 42 H -0.006 1.006 43 H 0.070 0.930 44 H 0.148 0.852 45 H 0.165 0.835 46 H 0.166 0.834 47 H 0.157 0.843 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.385 -9.939 -17.198 22.895 hybrid contribution 0.981 -0.716 1.179 1.693 sum -10.404 -10.655 -16.019 21.872 Atomic orbital electron populations 1.21666 0.79097 1.04256 1.01215 1.45702 1.08283 1.08646 1.74687 1.20882 0.90788 0.83673 0.74964 1.90754 1.71627 1.33409 1.51360 1.21738 0.90830 0.96761 1.08368 1.20663 0.77827 0.97011 1.01180 1.44776 1.06829 1.07017 1.80155 1.16124 0.82161 0.84352 0.77371 1.90882 1.68845 1.32423 1.59774 1.44927 1.03846 1.09694 1.78743 1.19573 0.92740 0.84957 0.92132 0.92574 1.21710 0.93184 1.01807 0.96436 1.18928 0.95463 0.94848 0.91157 1.21652 0.93832 1.46431 0.95854 0.91917 1.25945 1.00601 0.95209 0.97920 1.70112 1.30549 1.48947 1.07676 0.85554 0.79653 0.79027 0.77120 1.19602 1.21243 1.18702 1.20313 0.99733 0.94442 0.95520 1.21089 0.99594 0.99776 0.92747 1.21454 0.99779 0.96504 0.96514 1.21481 0.99657 0.93469 1.00005 1.21371 0.99869 1.00947 0.92252 1.21184 1.00717 0.95243 0.97867 0.93663 0.93332 0.86856 0.74020 0.84315 0.85181 0.94226 0.93186 0.74784 0.75470 0.91794 0.90718 0.97577 1.00585 0.92956 0.85218 0.83496 0.83439 0.84263 0.87034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.87 10.70 127.77 1.37 2.24 16 2 N -0.72 -7.90 5.71 -484.51 -2.77 -10.66 16 3 C 0.51 9.78 7.83 87.66 0.69 10.46 16 4 O -0.59 -18.31 15.98 -3.02 -0.05 -18.35 16 5 C -0.14 -1.85 5.81 29.85 0.17 -1.68 16 6 C 0.16 4.04 4.96 86.38 0.43 4.47 16 7 N -0.73 -18.38 5.56 -478.53 -2.66 -21.04 16 8 C 0.70 24.91 8.52 179.05 1.53 26.43 16 9 O -0.64 -29.24 16.01 -3.99 -0.06 -29.30 16 10 N -0.72 -23.48 3.79 -461.41 -1.75 -25.22 16 11 C 0.21 7.85 2.17 44.24 0.10 7.95 16 12 H 0.06 2.48 7.44 -2.39 -0.02 2.47 16 13 C -0.09 -3.72 4.67 30.59 0.14 -3.57 16 14 C 0.03 1.70 4.86 29.85 0.15 1.85 16 15 C -0.54 -29.83 9.11 25.60 0.23 -29.60 16 16 H 0.06 3.29 7.74 -2.92 -0.02 3.27 16 17 C 0.00 0.06 5.46 84.66 0.46 0.52 16 18 N -0.93 -56.41 13.29 21.45 0.28 -56.13 16 19 Si 0.96 43.51 29.54 68.60 2.03 45.53 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 21 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 22 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 23 C -0.10 -3.24 4.91 -19.87 -0.10 -3.33 16 24 C -0.11 -3.10 9.32 22.27 0.21 -2.89 16 25 C -0.12 -2.84 10.05 22.27 0.22 -2.62 16 26 C -0.13 -2.86 10.05 22.27 0.22 -2.64 16 27 C -0.13 -3.26 10.05 22.27 0.22 -3.04 16 28 C -0.13 -4.19 9.67 22.27 0.22 -3.98 16 29 H 0.04 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.42 1.23 8.83 -92.71 -0.82 0.41 16 33 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.13 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.04 1.28 8.10 -2.39 -0.02 1.27 16 36 H 0.05 1.50 8.10 -2.39 -0.02 1.48 16 37 H 0.42 6.87 8.49 -92.71 -0.79 6.08 16 38 H 0.41 11.04 8.62 -92.71 -0.80 10.24 16 39 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 40 H 0.07 2.68 8.14 -2.38 -0.02 2.66 16 41 H 0.01 0.31 7.75 -2.39 -0.02 0.29 16 42 H -0.02 -1.43 8.14 -2.39 -0.02 -1.45 16 43 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 44 H 0.13 3.06 7.73 -2.91 -0.02 3.04 16 45 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 46 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 47 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 48 H 0.11 3.62 8.04 -2.91 -0.02 3.60 16 Total: -1.00 -87.12 407.78 -0.14 -87.26 By element: Atomic # 1 Polarization: 28.78 SS G_CDS: -1.42 Total: 27.36 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: 6.26 Total: 0.56 kcal Atomic # 7 Polarization: -106.16 SS G_CDS: -6.89 Total: -113.05 kcal Atomic # 8 Polarization: -47.54 SS G_CDS: -0.11 Total: -47.66 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -87.12 -0.14 -87.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001564832340.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.326 kcal (2) G-P(sol) polarization free energy of solvation -87.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds