Wall clock time and date at job start Tue Mar 31 2020 17:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35679 * 117.00245 * 2 1 4 4 C 1.38911 * 119.68754 * 180.02562 * 3 2 1 5 5 C 1.38380 * 119.11200 * 180.02562 * 4 3 2 6 6 C 1.38823 * 118.48497 * 359.97438 * 5 4 3 7 7 C 1.50707 * 120.35591 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.46962 * 90.00481 * 7 6 5 9 9 C 1.50703 * 109.47115 * 180.02562 * 8 7 6 10 10 O 1.21280 * 119.99652 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00030 * 179.97438 * 9 8 7 12 12 C 1.47024 * 125.64513 * 359.97064 * 11 9 8 13 13 C 1.54324 * 107.26681 * 178.96478 * 12 11 9 14 14 C 1.55159 * 102.94333 * 337.80338 * 13 12 11 15 15 H 1.08996 * 111.00708 * 277.39464 * 14 13 12 16 16 C 1.53004 * 111.00328 * 153.57938 * 14 13 12 17 17 N 1.46499 * 109.47198 * 66.45684 * 16 14 13 18 18 C 1.36939 * 119.99933 * 180.27608 * 17 16 14 19 19 H 1.08001 * 119.99700 * 359.72658 * 18 17 16 20 20 C 1.38810 * 120.00095 * 179.71972 * 18 17 16 21 21 N 1.31624 * 119.99740 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00044 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47173 * 60.00435 * 22 20 18 24 24 H 1.48497 * 109.47172 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47132 * 300.00314 * 22 20 18 26 26 C 1.47419 * 125.64853 * 179.97438 * 11 9 8 27 27 C 1.38048 * 119.29305 * 0.25793 * 6 5 4 28 28 N 1.31967 * 120.82831 * 359.45483 * 27 6 5 29 29 H 1.08997 * 109.46828 * 299.99595 * 1 2 3 30 30 H 1.09004 * 109.47251 * 59.99694 * 1 2 3 31 31 H 1.08996 * 109.47069 * 179.97438 * 1 2 3 32 32 H 1.08002 * 120.44698 * 359.97322 * 4 3 2 33 33 H 1.08007 * 120.75629 * 179.97438 * 5 4 3 34 34 H 1.09002 * 109.46971 * 330.00183 * 7 6 5 35 35 H 1.08995 * 109.47163 * 210.00213 * 7 6 5 36 36 H 1.08999 * 109.47035 * 59.99888 * 8 7 6 37 37 H 1.09005 * 109.46904 * 299.99906 * 8 7 6 38 38 H 1.09003 * 109.88406 * 59.54756 * 12 11 9 39 39 H 1.08996 * 109.88468 * 298.37843 * 12 11 9 40 40 H 1.09004 * 110.71897 * 219.44651 * 13 12 11 41 41 H 1.08996 * 110.87654 * 96.24368 * 13 12 11 42 42 H 1.09009 * 109.46730 * 306.45471 * 16 14 13 43 43 H 1.08998 * 109.46846 * 186.46016 * 16 14 13 44 44 H 0.97001 * 119.99790 * 359.97438 * 17 16 14 45 45 H 0.96998 * 119.99409 * 179.97438 * 21 20 18 46 46 H 1.09005 * 110.36514 * 85.26648 * 26 11 9 47 47 H 1.08998 * 110.36722 * 322.94846 * 26 11 9 48 48 H 1.07994 * 119.58674 * 179.72002 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2740 -0.0005 5 6 4.0484 2.5132 0.0000 6 6 3.2504 3.6491 0.0005 7 6 3.8767 5.0199 0.0017 8 6 4.0891 5.4848 -1.4404 9 6 4.7159 6.8552 -1.4392 10 8 4.9676 7.4060 -0.3884 11 7 4.9969 7.4687 -2.6059 12 6 4.7459 6.9179 -3.9458 13 6 5.2018 7.9786 -4.9698 14 6 5.1598 9.2947 -4.1491 15 1 4.1496 9.7025 -4.1160 16 6 6.1448 10.3224 -4.7100 17 7 5.7079 10.7399 -6.0445 18 6 6.4417 11.6562 -6.7497 19 1 7.3400 12.0743 -6.3201 20 6 6.0309 12.0474 -8.0166 21 7 4.9358 11.5379 -8.5399 22 14 7.0314 13.2978 -8.9782 23 1 8.4044 12.7742 -9.1921 24 1 6.3848 13.5442 -10.2921 25 1 7.1000 14.5697 -8.2146 26 6 5.6067 8.8031 -2.7499 27 6 1.8770 3.5097 0.0059 28 7 1.3186 2.3141 -0.0002 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 4.0229 0.3695 -0.0005 33 1 5.1254 2.5947 0.0000 34 1 4.8371 4.9801 0.5158 35 1 3.2181 5.7198 0.5158 36 1 3.1287 5.5245 -1.9544 37 1 4.7477 4.7848 -1.9545 38 1 3.6821 6.7156 -4.0702 39 1 5.3183 6.0005 -4.0826 40 1 4.5092 8.0260 -5.8102 41 1 6.2142 7.7730 -5.3174 42 1 7.1373 9.8763 -4.7755 43 1 6.1793 11.1899 -4.0510 44 1 4.9013 10.3639 -6.4304 45 1 4.6486 11.8116 -9.4250 46 1 6.6933 8.7307 -2.7025 47 1 5.2364 9.4750 -1.9756 48 1 1.2517 4.3902 0.0109 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567133909.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:44 Heat of formation + Delta-G solvation = -32.931229 kcal Electronic energy + Delta-G solvation = -27147.756805 eV Core-core repulsion = 23203.019639 eV Total energy + Delta-G solvation = -3944.737166 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.05481 -40.09879 -38.49108 -37.70477 -34.70663 -34.48260 -32.62655 -32.25501 -30.48077 -29.91220 -28.99464 -27.68762 -25.89232 -24.56294 -23.81842 -22.95924 -22.43293 -21.69672 -20.04696 -19.11810 -18.78781 -17.53918 -17.38178 -17.02537 -16.39043 -16.34746 -15.69263 -15.34028 -14.95076 -14.83517 -14.67270 -14.42371 -13.89802 -13.80075 -13.56517 -13.49895 -13.34560 -13.14319 -12.80872 -12.59558 -12.48984 -12.40583 -12.30880 -11.92402 -11.65793 -11.47041 -11.38683 -11.20397 -10.86401 -10.69719 -10.52116 -10.41044 -10.27636 -10.10309 -10.00366 -9.87626 -9.70876 -8.89953 -8.75354 -8.65333 -6.95594 -5.79533 -3.08237 0.74671 0.86370 2.56769 2.70987 2.93126 3.37403 3.42781 3.47326 3.48149 3.92653 4.22071 4.50118 4.52863 4.56714 4.60503 4.72807 4.77220 4.79176 4.86597 4.91411 4.92867 5.01416 5.08373 5.22246 5.25825 5.27023 5.29555 5.47060 5.50169 5.54385 5.58508 5.63227 5.79116 5.87076 5.96767 6.01039 6.01784 6.05740 6.09896 6.19389 6.36576 6.42094 6.69338 6.81583 6.83125 7.45490 7.49497 7.67373 8.09701 8.39454 9.50852 10.07598 10.42571 11.43270 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025289 B = 0.001646 C = 0.001584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.921135 B =17007.330118 C =17674.265170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.310 6.310 3 C 0.313 3.687 4 C -0.187 4.187 5 C -0.037 4.037 6 C -0.169 4.169 7 C -0.055 4.055 8 C -0.131 4.131 9 C 0.526 3.474 10 O -0.546 6.546 11 N -0.617 5.617 12 C 0.099 3.901 13 C -0.121 4.121 14 C -0.106 4.106 15 H 0.084 0.916 16 C 0.164 3.836 17 N -0.731 5.731 18 C -0.241 4.241 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.934 5.934 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.112 3.888 27 C 0.144 3.856 28 N -0.538 5.538 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.022 0.978 43 H 0.022 0.978 44 H 0.384 0.616 45 H 0.256 0.744 46 H 0.070 0.930 47 H 0.077 0.923 48 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.136 -23.072 17.641 29.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.217 6.217 3 C 0.134 3.866 4 C -0.208 4.208 5 C -0.062 4.062 6 C -0.172 4.172 7 C -0.093 4.093 8 C -0.171 4.171 9 C 0.315 3.685 10 O -0.424 6.424 11 N -0.351 5.351 12 C -0.024 4.024 13 C -0.159 4.159 14 C -0.125 4.125 15 H 0.102 0.898 16 C 0.036 3.964 17 N -0.375 5.375 18 C -0.372 4.372 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.583 5.583 22 Si 0.739 3.261 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.010 4.010 27 C -0.011 4.011 28 N -0.261 5.261 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.159 0.841 33 H 0.160 0.840 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.040 0.960 43 H 0.040 0.960 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.088 0.912 47 H 0.095 0.905 48 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.717 -23.071 18.215 30.152 hybrid contribution 0.843 0.693 -0.919 1.426 sum -5.873 -22.378 17.296 28.887 Atomic orbital electron populations 1.22859 0.77132 1.02953 1.02539 1.86233 1.23010 1.24632 1.87866 1.19876 0.89479 0.84730 0.92505 1.21076 0.92007 0.99601 1.08097 1.21373 1.00663 0.90703 0.93471 1.20762 0.94759 0.96440 1.05227 1.20187 1.02103 0.91490 0.95551 1.21653 1.02512 0.94038 0.98896 1.20284 0.78468 0.87460 0.82297 1.90706 1.54161 1.67064 1.30509 1.48592 1.61491 1.19144 1.05828 1.22157 1.00694 0.97637 0.81938 1.22640 1.03154 0.93025 0.97081 1.22562 1.01260 0.95817 0.92875 0.89780 1.20549 0.94225 0.93603 0.88018 1.42288 1.30413 1.50840 1.13943 1.19190 1.05047 1.15822 0.97155 0.91203 1.24732 0.97924 1.00629 0.97617 1.69647 1.24318 1.46946 1.17341 0.86257 0.79274 0.81301 0.79283 1.21266 1.21692 1.21254 1.22256 0.97889 0.83083 0.97811 1.22358 0.92296 0.93602 0.92893 1.67337 1.40922 0.98807 1.19076 0.92293 0.92223 0.88635 0.84086 0.83975 0.89890 0.89788 0.88781 0.88878 0.91440 0.91539 0.89464 0.90170 0.96005 0.95998 0.78241 0.93464 0.91221 0.90459 0.82294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.38 101.05 1.05 1.31 16 2 O -0.31 -2.84 10.48 -18.74 -0.20 -3.04 16 3 C 0.31 2.99 7.49 -17.12 -0.13 2.87 16 4 C -0.19 -1.47 10.04 -39.28 -0.39 -1.86 16 5 C -0.04 -0.26 9.85 -39.31 -0.39 -0.64 16 6 C -0.17 -1.28 5.15 -104.47 -0.54 -1.82 16 7 C -0.05 -0.43 4.66 -27.88 -0.13 -0.56 16 8 C -0.13 -1.08 4.87 -27.88 -0.14 -1.21 16 9 C 0.53 6.46 7.85 -10.99 -0.09 6.38 16 10 O -0.55 -8.61 16.24 5.56 0.09 -8.52 16 11 N -0.62 -7.62 3.33 -170.53 -0.57 -8.19 16 12 C 0.10 1.04 6.49 -3.06 -0.02 1.02 16 13 C -0.12 -1.62 6.13 -24.90 -0.15 -1.77 16 14 C -0.11 -1.59 3.10 -88.48 -0.27 -1.87 16 15 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 16 C 0.16 3.13 5.71 -4.04 -0.02 3.11 16 17 N -0.73 -17.79 5.45 -59.90 -0.33 -18.11 16 18 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 19 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -27.65 13.06 55.49 0.72 -26.92 16 22 Si 0.91 22.11 29.55 -169.99 -5.02 17.08 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 C 0.11 1.54 6.37 -2.54 -0.02 1.53 16 27 C 0.14 1.19 10.85 -17.56 -0.19 1.00 16 28 N -0.54 -5.28 9.22 -13.33 -0.12 -5.40 16 29 H 0.06 0.38 8.10 -51.93 -0.42 -0.04 16 30 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 31 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.14 0.69 8.06 -52.48 -0.42 0.26 16 34 H 0.08 0.69 8.05 -51.93 -0.42 0.27 16 35 H 0.08 0.70 8.05 -51.93 -0.42 0.28 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.08 1.12 8.01 -51.93 -0.42 0.71 16 42 H 0.02 0.42 8.11 -51.92 -0.42 0.00 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.38 9.73 7.53 -40.82 -0.31 9.42 16 45 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.07 0.95 8.04 -51.93 -0.42 0.53 16 47 H 0.08 1.11 8.04 -51.93 -0.42 0.69 16 48 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 400.55 15.07 6.04 6.04 Total: -1.00 -33.44 400.55 -8.91 -42.36 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -7.85 Total: 4.46 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -1.67 Total: 0.24 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: -0.29 Total: -58.62 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: -0.11 Total: -11.56 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.44 -8.91 -42.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567133909.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.426 kcal (2) G-P(sol) polarization free energy of solvation -33.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds