Wall clock time and date at job start Tue Mar 31 2020 17:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35679 * 117.00245 * 2 1 4 4 C 1.38911 * 119.68754 * 180.02562 * 3 2 1 5 5 C 1.38380 * 119.11200 * 180.02562 * 4 3 2 6 6 C 1.38823 * 118.48497 * 359.97438 * 5 4 3 7 7 C 1.50707 * 120.35591 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.46962 * 90.00481 * 7 6 5 9 9 C 1.50703 * 109.47115 * 180.02562 * 8 7 6 10 10 O 1.21280 * 119.99652 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00030 * 179.97438 * 9 8 7 12 12 C 1.47024 * 125.64513 * 359.97064 * 11 9 8 13 13 C 1.54324 * 107.26681 * 178.96478 * 12 11 9 14 14 C 1.55159 * 102.94333 * 337.80338 * 13 12 11 15 15 H 1.08996 * 111.00708 * 277.39464 * 14 13 12 16 16 C 1.53004 * 111.00328 * 153.57938 * 14 13 12 17 17 N 1.46499 * 109.47198 * 66.45684 * 16 14 13 18 18 C 1.36939 * 119.99933 * 180.27608 * 17 16 14 19 19 H 1.08001 * 119.99700 * 359.72658 * 18 17 16 20 20 C 1.38810 * 120.00095 * 179.71972 * 18 17 16 21 21 N 1.31624 * 119.99740 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00044 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47173 * 60.00435 * 22 20 18 24 24 H 1.48497 * 109.47172 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47132 * 300.00314 * 22 20 18 26 26 C 1.47419 * 125.64853 * 179.97438 * 11 9 8 27 27 C 1.38048 * 119.29305 * 0.25793 * 6 5 4 28 28 N 1.31967 * 120.82831 * 359.45483 * 27 6 5 29 29 H 1.08997 * 109.46828 * 299.99595 * 1 2 3 30 30 H 1.09004 * 109.47251 * 59.99694 * 1 2 3 31 31 H 1.08996 * 109.47069 * 179.97438 * 1 2 3 32 32 H 1.08002 * 120.44698 * 359.97322 * 4 3 2 33 33 H 1.08007 * 120.75629 * 179.97438 * 5 4 3 34 34 H 1.09002 * 109.46971 * 330.00183 * 7 6 5 35 35 H 1.08995 * 109.47163 * 210.00213 * 7 6 5 36 36 H 1.08999 * 109.47035 * 59.99888 * 8 7 6 37 37 H 1.09005 * 109.46904 * 299.99906 * 8 7 6 38 38 H 1.09003 * 109.88406 * 59.54756 * 12 11 9 39 39 H 1.08996 * 109.88468 * 298.37843 * 12 11 9 40 40 H 1.09004 * 110.71897 * 219.44651 * 13 12 11 41 41 H 1.08996 * 110.87654 * 96.24368 * 13 12 11 42 42 H 1.09009 * 109.46730 * 306.45471 * 16 14 13 43 43 H 1.08998 * 109.46846 * 186.46016 * 16 14 13 44 44 H 0.97001 * 119.99790 * 359.97438 * 17 16 14 45 45 H 0.96998 * 119.99409 * 179.97438 * 21 20 18 46 46 H 1.09005 * 110.36514 * 85.26648 * 26 11 9 47 47 H 1.08998 * 110.36722 * 322.94846 * 26 11 9 48 48 H 1.07994 * 119.58674 * 179.72002 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2740 -0.0005 5 6 4.0484 2.5132 0.0000 6 6 3.2504 3.6491 0.0005 7 6 3.8767 5.0199 0.0017 8 6 4.0891 5.4848 -1.4404 9 6 4.7159 6.8552 -1.4392 10 8 4.9676 7.4060 -0.3884 11 7 4.9969 7.4687 -2.6059 12 6 4.7459 6.9179 -3.9458 13 6 5.2018 7.9786 -4.9698 14 6 5.1598 9.2947 -4.1491 15 1 4.1496 9.7025 -4.1160 16 6 6.1448 10.3224 -4.7100 17 7 5.7079 10.7399 -6.0445 18 6 6.4417 11.6562 -6.7497 19 1 7.3400 12.0743 -6.3201 20 6 6.0309 12.0474 -8.0166 21 7 4.9358 11.5379 -8.5399 22 14 7.0314 13.2978 -8.9782 23 1 8.4044 12.7742 -9.1921 24 1 6.3848 13.5442 -10.2921 25 1 7.1000 14.5697 -8.2146 26 6 5.6067 8.8031 -2.7499 27 6 1.8770 3.5097 0.0059 28 7 1.3186 2.3141 -0.0002 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 4.0229 0.3695 -0.0005 33 1 5.1254 2.5947 0.0000 34 1 4.8371 4.9801 0.5158 35 1 3.2181 5.7198 0.5158 36 1 3.1287 5.5245 -1.9544 37 1 4.7477 4.7848 -1.9545 38 1 3.6821 6.7156 -4.0702 39 1 5.3183 6.0005 -4.0826 40 1 4.5092 8.0260 -5.8102 41 1 6.2142 7.7730 -5.3174 42 1 7.1373 9.8763 -4.7755 43 1 6.1793 11.1899 -4.0510 44 1 4.9013 10.3639 -6.4304 45 1 4.6486 11.8116 -9.4250 46 1 6.6933 8.7307 -2.7025 47 1 5.2364 9.4750 -1.9756 48 1 1.2517 4.3902 0.0109 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567133909.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:43 Heat of formation + Delta-G solvation = -55.193326 kcal Electronic energy + Delta-G solvation = -27148.722162 eV Core-core repulsion = 23203.019639 eV Total energy + Delta-G solvation = -3945.702523 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.66260 -41.07969 -39.17500 -38.75046 -36.41983 -35.16719 -33.91913 -33.16467 -31.93522 -30.73679 -30.13480 -28.28389 -27.22481 -25.67995 -24.45745 -24.14216 -23.82881 -22.38163 -21.33280 -20.04829 -19.36545 -19.14607 -18.21441 -18.10755 -17.45792 -16.97885 -16.66214 -16.45577 -16.06911 -15.68819 -15.45968 -15.28744 -15.24757 -14.94739 -14.82811 -14.49946 -14.32030 -14.04497 -13.86850 -13.77304 -13.58828 -13.16915 -12.99909 -12.93563 -12.86121 -12.71113 -12.52281 -12.24200 -12.11915 -12.05265 -12.01174 -11.76104 -11.66111 -11.58804 -10.96713 -10.90981 -10.78838 -10.58884 -9.65060 -9.35828 -8.98054 -7.93959 -5.22164 0.15525 0.29350 1.49270 1.51606 1.57698 1.63959 1.99187 2.17551 2.57502 2.76574 3.33482 3.38500 3.41281 3.67299 3.67733 3.88709 3.95765 3.98256 4.04968 4.20177 4.24958 4.33254 4.34600 4.36634 4.42706 4.45997 4.46788 4.57390 4.63894 4.69802 4.73930 4.76466 4.83152 4.87094 4.95369 5.01073 5.03790 5.09429 5.19346 5.25620 5.30193 5.39728 5.42708 5.51331 5.51885 6.24413 6.28401 6.55469 6.85313 7.14894 7.35694 8.10672 8.35151 9.29108 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025289 B = 0.001646 C = 0.001584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.921135 B =17007.330118 C =17674.265170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.324 6.324 3 C 0.291 3.709 4 C -0.191 4.191 5 C -0.033 4.033 6 C -0.165 4.165 7 C -0.047 4.047 8 C -0.121 4.121 9 C 0.523 3.477 10 O -0.586 6.586 11 N -0.619 5.619 12 C 0.106 3.894 13 C -0.119 4.119 14 C -0.097 4.097 15 H 0.076 0.924 16 C 0.164 3.836 17 N -0.741 5.741 18 C -0.248 4.248 19 H 0.074 0.926 20 C -0.072 4.072 21 N -0.967 5.967 22 Si 0.972 3.028 23 H -0.278 1.278 24 H -0.295 1.295 25 H -0.280 1.280 26 C 0.119 3.881 27 C 0.133 3.867 28 N -0.558 5.558 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.120 0.880 32 H 0.157 0.843 33 H 0.167 0.833 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.026 0.974 43 H 0.018 0.982 44 H 0.376 0.624 45 H 0.251 0.749 46 H 0.071 0.929 47 H 0.067 0.933 48 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.486 -24.392 17.891 30.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.231 6.231 3 C 0.113 3.887 4 C -0.212 4.212 5 C -0.058 4.058 6 C -0.168 4.168 7 C -0.086 4.086 8 C -0.161 4.161 9 C 0.314 3.686 10 O -0.467 6.467 11 N -0.352 5.352 12 C -0.016 4.016 13 C -0.156 4.156 14 C -0.117 4.117 15 H 0.094 0.906 16 C 0.037 3.963 17 N -0.384 5.384 18 C -0.380 4.380 19 H 0.092 0.908 20 C -0.264 4.264 21 N -0.617 5.617 22 Si 0.801 3.199 23 H -0.204 1.204 24 H -0.221 1.221 25 H -0.206 1.206 26 C -0.005 4.005 27 C -0.022 4.022 28 N -0.282 5.282 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.138 0.862 32 H 0.174 0.826 33 H 0.184 0.816 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.129 0.871 37 H 0.133 0.867 38 H 0.105 0.895 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.044 0.956 43 H 0.036 0.964 44 H 0.209 0.791 45 H 0.060 0.940 46 H 0.089 0.911 47 H 0.086 0.914 48 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -6.053 -24.408 18.487 31.211 hybrid contribution 0.654 1.111 -0.926 1.587 sum -5.399 -23.297 17.561 29.670 Atomic orbital electron populations 1.23001 0.76120 1.04461 1.02062 1.86212 1.24143 1.24777 1.87986 1.20218 0.90341 0.84817 0.93319 1.21334 0.91530 1.00666 1.07640 1.21671 1.01850 0.90049 0.92273 1.20716 0.94493 0.96420 1.05138 1.20079 1.01744 0.91388 0.95344 1.21672 1.03309 0.91607 0.99478 1.21004 0.77683 0.88507 0.81396 1.90692 1.55839 1.68320 1.31869 1.48671 1.61281 1.18465 1.06776 1.22212 1.02343 0.97248 0.79812 1.22575 1.02725 0.92912 0.97437 1.22345 0.99558 0.95706 0.94089 0.90583 1.20655 0.95405 0.94514 0.85747 1.42451 1.29947 1.50429 1.15540 1.19592 1.05133 1.15802 0.97479 0.90819 1.25515 0.99216 1.02911 0.98804 1.69794 1.25949 1.48534 1.17445 0.85243 0.78029 0.79132 0.77530 1.20368 1.22129 1.20643 1.22048 0.98037 0.84095 0.96306 1.22642 0.93013 0.93623 0.92906 1.67324 1.41646 0.99351 1.19853 0.92716 0.92712 0.86179 0.82559 0.81566 0.90214 0.90575 0.87150 0.86670 0.89460 0.88815 0.90329 0.90823 0.95601 0.96433 0.79136 0.93988 0.91064 0.91447 0.81056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 10.38 113.37 1.18 1.65 16 2 O -0.32 -5.73 10.48 -89.97 -0.94 -6.67 16 3 C 0.29 5.32 7.49 84.79 0.63 5.96 16 4 C -0.19 -2.66 10.04 22.46 0.23 -2.43 16 5 C -0.03 -0.38 9.85 22.44 0.22 -0.16 16 6 C -0.17 -2.15 5.15 -19.77 -0.10 -2.26 16 7 C -0.05 -0.64 4.66 29.85 0.14 -0.50 16 8 C -0.12 -1.62 4.87 29.85 0.15 -1.47 16 9 C 0.52 11.78 7.85 87.66 0.69 12.47 16 10 O -0.59 -17.93 16.24 -3.03 -0.05 -17.98 16 11 N -0.62 -13.98 3.33 -811.84 -2.70 -16.68 16 12 C 0.11 1.92 6.49 86.73 0.56 2.48 16 13 C -0.12 -3.00 6.13 31.78 0.19 -2.81 16 14 C -0.10 -2.89 3.10 -9.41 -0.03 -2.92 16 15 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 16 C 0.16 6.24 5.71 86.38 0.49 6.73 16 17 N -0.74 -36.29 5.45 -343.44 -1.87 -38.16 16 18 C -0.25 -13.63 9.99 84.03 0.84 -12.79 16 19 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 20 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 21 N -0.97 -57.77 13.06 21.65 0.28 -57.49 16 22 Si 0.97 45.41 29.55 68.60 2.03 47.44 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 24 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 25 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 26 C 0.12 3.15 6.37 86.85 0.55 3.71 16 27 C 0.13 2.03 10.85 84.63 0.92 2.95 16 28 N -0.56 -10.52 9.22 -308.95 -2.85 -13.37 16 29 H 0.05 0.70 8.10 -2.39 -0.02 0.68 16 30 H 0.05 0.71 8.10 -2.39 -0.02 0.69 16 31 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.16 1.58 8.06 -2.91 -0.02 1.55 16 33 H 0.17 1.04 8.06 -2.91 -0.02 1.01 16 34 H 0.08 1.16 8.05 -2.39 -0.02 1.14 16 35 H 0.08 1.17 8.05 -2.39 -0.02 1.15 16 36 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.12 1.10 8.14 -2.38 -0.02 1.08 16 38 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.07 1.97 8.01 -2.39 -0.02 1.95 16 42 H 0.03 0.98 8.11 -2.38 -0.02 0.96 16 43 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.38 19.35 7.53 -92.71 -0.70 18.65 16 45 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 46 H 0.07 1.87 8.04 -2.38 -0.02 1.85 16 47 H 0.07 1.93 8.04 -2.39 -0.02 1.91 16 48 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -72.17 400.55 1.27 -70.90 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: 0.25 Total: 25.00 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: 7.13 Total: 7.01 kcal Atomic # 7 Polarization: -118.56 SS G_CDS: -7.14 Total: -125.70 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.99 Total: -24.65 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -72.17 1.27 -70.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567133909.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.703 kcal (2) G-P(sol) polarization free energy of solvation -72.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds