Wall clock time and date at job start Tue Mar 31 2020 17:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35429 * 116.99911 * 2 1 4 4 N 1.32237 * 119.79941 * 0.31049 * 3 2 1 5 5 C 1.31885 * 121.80071 * 180.31461 * 4 3 2 6 6 C 1.38349 * 121.18253 * 359.65454 * 5 4 3 7 7 C 1.38334 * 119.46229 * 0.02569 * 6 5 4 8 8 C 1.39991 * 118.34782 * 359.97438 * 7 6 5 9 9 C 1.47521 * 120.59376 * 180.02562 * 8 7 6 10 10 O 1.21598 * 119.99852 * 179.97438 * 9 8 7 11 11 N 1.34770 * 120.00454 * 359.97438 * 9 8 7 12 12 C 1.46504 * 119.99978 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.46979 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47040 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.46895 * 174.93436 * 14 13 12 16 16 H 1.09007 * 109.87324 * 306.13617 * 15 14 13 17 17 C 1.54321 * 110.01252 * 67.23881 * 15 14 13 18 18 C 1.55149 * 102.94179 * 141.68277 * 17 15 14 19 19 C 1.54908 * 101.58153 * 324.49640 * 18 17 15 20 20 N 1.47023 * 109.87930 * 185.12435 * 15 14 13 21 21 C 1.36931 * 125.65028 * 61.45423 * 20 15 14 22 22 H 1.08002 * 120.00168 * 14.67814 * 21 20 15 23 23 C 1.38815 * 119.99820 * 194.68515 * 21 20 15 24 24 N 1.31619 * 120.00482 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99755 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47358 * 89.99886 * 25 23 21 27 27 H 1.48503 * 109.46945 * 209.99344 * 25 23 21 28 28 H 1.48497 * 109.47433 * 329.99444 * 25 23 21 29 29 H 1.09003 * 109.46967 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47707 * 300.00163 * 1 2 3 31 31 H 1.09000 * 109.47688 * 60.00425 * 1 2 3 32 32 H 1.07998 * 119.40474 * 179.67938 * 5 4 3 33 33 H 1.08004 * 120.27210 * 180.02562 * 6 5 4 34 34 H 1.08001 * 120.83026 * 179.97438 * 7 6 5 35 35 H 0.96998 * 120.00251 * 0.02562 * 11 9 8 36 36 H 1.08998 * 109.46704 * 60.00456 * 12 11 9 37 37 H 1.08991 * 109.47259 * 300.00065 * 12 11 9 38 38 H 1.08996 * 109.47046 * 60.00171 * 13 12 11 39 39 H 1.09001 * 109.47140 * 300.00302 * 13 12 11 40 40 H 1.09003 * 109.46886 * 54.93221 * 14 13 12 41 41 H 1.08996 * 109.46795 * 294.93480 * 14 13 12 42 42 H 1.08995 * 110.72025 * 23.31644 * 17 15 14 43 43 H 1.09007 * 110.71831 * 260.04719 * 17 15 14 44 44 H 1.09007 * 111.00405 * 206.42347 * 18 17 15 45 45 H 1.08997 * 111.01050 * 82.57372 * 18 17 15 46 46 H 1.09003 * 110.36843 * 155.85490 * 19 18 17 47 47 H 1.09001 * 110.36413 * 278.06156 * 19 18 17 48 48 H 0.96995 * 120.00670 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0437 1.2067 0.0000 4 7 1.3196 2.3132 0.0062 5 6 1.8769 3.5085 0.0003 6 6 3.2523 3.6576 -0.0056 7 6 4.0586 2.5335 -0.0058 8 6 3.4448 1.2753 0.0005 9 6 4.2569 0.0437 0.0011 10 8 3.7125 -1.0435 0.0071 11 7 5.6023 0.1236 -0.0050 12 6 6.4087 -1.0995 -0.0038 13 6 7.8937 -0.7312 -0.0123 14 6 8.7360 -2.0086 -0.0117 15 6 10.2156 -1.6439 -0.1475 16 1 10.3627 -1.0125 -1.0238 17 6 10.6956 -0.9041 1.1190 18 6 12.1280 -1.4631 1.3260 19 6 11.9577 -2.9327 0.8667 20 7 11.0226 -2.8666 -0.2711 21 6 10.9219 -3.7912 -1.2761 22 1 10.3847 -3.5487 -2.1811 23 6 11.5101 -5.0402 -1.1316 24 7 12.1650 -5.3357 -0.0288 25 14 11.3720 -6.3017 -2.5023 26 1 12.5164 -6.1458 -3.4357 27 1 11.3900 -7.6682 -1.9211 28 1 10.0999 -6.0942 -3.2398 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.2483 4.3866 0.0005 33 1 3.6931 4.6436 -0.0100 34 1 5.1347 2.6242 -0.0108 35 1 6.0366 0.9909 -0.0094 36 1 6.1759 -1.6890 -0.8906 37 1 6.1836 -1.6823 0.8893 38 1 8.1269 -0.1415 0.8742 39 1 8.1185 -0.1486 -0.9057 40 1 8.4390 -2.6400 -0.8492 41 1 8.5787 -2.5470 0.9228 42 1 10.0603 -1.1460 1.9709 43 1 10.7224 0.1724 0.9499 44 1 12.4191 -1.4130 2.3753 45 1 12.8471 -0.9381 0.6973 46 1 12.9154 -3.3437 0.5473 47 1 11.5366 -3.5353 1.6715 48 1 12.5764 -6.2083 0.0720 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567262192.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:11 Heat of formation + Delta-G solvation = -18.933957 kcal Electronic energy + Delta-G solvation = -27863.453489 eV Core-core repulsion = 23919.323290 eV Total energy + Delta-G solvation = -3944.130199 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.22086 -39.26435 -38.20519 -37.80293 -35.46124 -33.48146 -32.67499 -31.98154 -31.20041 -29.37264 -28.17231 -27.46404 -25.34496 -24.57959 -23.81576 -23.14415 -21.50940 -20.83020 -20.11393 -19.13822 -18.85342 -17.73454 -17.44951 -16.69619 -16.40487 -15.74526 -15.54080 -15.46455 -15.01856 -14.72341 -14.43331 -14.32171 -14.15542 -13.80561 -13.62934 -13.39485 -12.98328 -12.80527 -12.29821 -12.05276 -12.01585 -11.89894 -11.67912 -11.54287 -11.43039 -11.00428 -10.78086 -10.70906 -10.53751 -10.40719 -10.38974 -10.06101 -9.97418 -9.85877 -9.73617 -9.59514 -9.56615 -9.13635 -8.86673 -8.53481 -6.73123 -5.70670 -3.05620 0.29704 0.81641 2.71473 2.73570 3.02179 3.41911 3.47842 3.49363 3.49981 3.85256 4.27841 4.39527 4.52292 4.56643 4.74845 4.96189 5.00442 5.03863 5.10665 5.21363 5.34267 5.36935 5.41692 5.47712 5.58552 5.63159 5.64367 5.76167 5.87595 5.88531 6.00482 6.07248 6.14563 6.29688 6.37421 6.41726 6.46204 6.59619 6.73265 6.75439 6.88264 6.99642 7.20608 7.29726 7.44803 7.58360 7.67424 7.84344 8.15857 8.33761 9.24791 9.86399 10.55803 11.41767 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016989 B = 0.002118 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.707022 B =13215.094463 C =14393.659024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.270 6.270 3 C 0.371 3.629 4 N -0.547 5.547 5 C 0.165 3.835 6 C -0.221 4.221 7 C -0.009 4.009 8 C -0.208 4.208 9 C 0.559 3.441 10 O -0.515 6.515 11 N -0.726 5.726 12 C 0.120 3.880 13 C -0.127 4.127 14 C -0.122 4.122 15 C 0.162 3.838 16 H 0.030 0.970 17 C -0.124 4.124 18 C -0.151 4.151 19 C 0.173 3.827 20 N -0.596 5.596 21 C -0.226 4.226 22 H 0.074 0.926 23 C -0.006 4.006 24 N -0.918 5.918 25 Si 0.908 3.092 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.280 1.280 29 H 0.099 0.901 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.165 0.835 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.396 0.604 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.068 0.932 47 H 0.024 0.976 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.180 21.036 2.340 27.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.173 6.173 3 C 0.191 3.809 4 N -0.271 5.271 5 C 0.008 3.992 6 C -0.241 4.241 7 C -0.035 4.035 8 C -0.214 4.214 9 C 0.345 3.655 10 O -0.391 6.391 11 N -0.379 5.379 12 C -0.003 4.003 13 C -0.165 4.165 14 C -0.162 4.162 15 C 0.055 3.945 16 H 0.048 0.952 17 C -0.162 4.162 18 C -0.189 4.189 19 C 0.048 3.952 20 N -0.320 5.320 21 C -0.354 4.354 22 H 0.092 0.908 23 C -0.202 4.202 24 N -0.565 5.565 25 Si 0.738 3.262 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.206 1.206 29 H 0.118 0.882 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.182 0.818 33 H 0.162 0.838 34 H 0.163 0.837 35 H 0.230 0.770 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.087 0.913 47 H 0.042 0.958 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -19.292 19.573 2.308 27.579 hybrid contribution 0.749 -0.027 -0.667 1.003 sum -18.543 19.546 1.641 26.992 Atomic orbital electron populations 1.22973 0.77429 1.03455 1.02238 1.86553 1.22409 1.22929 1.85444 1.19895 0.88180 0.85169 0.87619 1.67494 1.40387 0.98702 1.20500 1.22676 0.93125 0.93755 0.89684 1.21940 0.94754 0.99968 1.07475 1.21676 1.00751 0.90532 0.90504 1.20100 0.91706 0.95160 1.14478 1.17771 0.82118 0.88269 0.77390 1.90856 1.71610 1.28349 1.48267 1.45971 1.05682 1.10403 1.75832 1.21524 0.90207 0.85862 1.02717 1.21839 0.92539 1.00171 1.01997 1.22023 0.96421 0.95199 1.02560 1.20928 0.89522 0.89384 0.94689 0.95212 1.22586 0.97346 0.98134 0.98131 1.23012 0.95806 1.00540 0.99564 1.21397 0.95184 0.89348 0.89287 1.44539 1.38542 1.22538 1.26421 1.18960 1.30686 0.91616 0.94183 0.90820 1.24898 1.00969 0.97103 0.97263 1.69935 1.39297 1.21571 1.25711 0.86182 0.77787 0.81151 0.81046 1.21656 1.21688 1.20600 0.88245 0.92231 0.92238 0.81829 0.83755 0.83684 0.76983 0.91223 0.91314 0.91736 0.91753 0.91564 0.92214 0.92046 0.92683 0.92585 0.92520 0.91343 0.95841 0.93754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.38 101.05 1.05 1.36 16 2 O -0.27 -3.59 8.58 -39.75 -0.34 -3.93 16 3 C 0.37 4.49 7.51 -16.61 -0.12 4.36 16 4 N -0.55 -5.45 9.21 -12.98 -0.12 -5.57 16 5 C 0.16 1.10 11.17 -17.49 -0.20 0.91 16 6 C -0.22 -1.25 10.09 -39.51 -0.40 -1.65 16 7 C -0.01 -0.06 9.64 -38.89 -0.37 -0.44 16 8 C -0.21 -2.33 5.90 -104.69 -0.62 -2.95 16 9 C 0.56 7.66 7.77 -12.48 -0.10 7.57 16 10 O -0.51 -9.23 15.19 -16.49 -0.25 -9.48 16 11 N -0.73 -8.18 5.51 -61.35 -0.34 -8.52 16 12 C 0.12 1.59 5.67 -4.04 -0.02 1.57 16 13 C -0.13 -1.63 5.10 -26.73 -0.14 -1.77 16 14 C -0.12 -2.15 4.72 -26.73 -0.13 -2.27 16 15 C 0.16 3.21 3.16 -66.95 -0.21 2.99 16 16 H 0.03 0.60 8.14 -51.92 -0.42 0.17 16 17 C -0.12 -2.08 5.71 -24.90 -0.14 -2.23 16 18 C -0.15 -2.82 7.08 -24.59 -0.17 -2.99 16 19 C 0.17 4.19 5.41 -2.53 -0.01 4.17 16 20 N -0.60 -14.95 3.13 -162.58 -0.51 -15.46 16 21 C -0.23 -6.23 9.70 -15.06 -0.15 -6.37 16 22 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 23 C -0.01 -0.16 5.47 -17.43 -0.10 -0.25 16 24 N -0.92 -27.07 10.58 55.49 0.59 -26.48 16 25 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 29 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 31 H 0.06 0.48 8.11 -51.93 -0.42 0.06 16 32 H 0.16 0.53 8.06 -52.49 -0.42 0.11 16 33 H 0.14 0.37 8.06 -52.48 -0.42 -0.05 16 34 H 0.15 0.62 6.52 -52.49 -0.34 0.28 16 35 H 0.40 3.10 6.57 -40.82 -0.27 2.83 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.06 0.74 7.65 -51.93 -0.40 0.34 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 1.30 7.84 -51.93 -0.41 0.90 16 41 H 0.06 1.12 8.03 -51.93 -0.42 0.71 16 42 H 0.06 0.99 7.78 -51.93 -0.40 0.59 16 43 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.07 1.85 6.93 -51.93 -0.36 1.49 16 47 H 0.02 0.62 8.06 -51.93 -0.42 0.20 16 48 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 390.52 15.07 5.89 5.89 Total: -1.00 -35.09 390.52 -9.57 -44.65 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -7.63 Total: -0.34 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -1.83 Total: 2.01 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: -0.38 Total: -56.03 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: -0.59 Total: -13.41 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.09 -9.57 -44.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567262192.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.718 kcal (2) G-P(sol) polarization free energy of solvation -35.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds