Wall clock time and date at job start Tue Mar 31 2020 17:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34774 * 119.99419 * 2 1 4 4 O 1.21284 * 120.00167 * 179.97438 * 3 2 1 5 5 C 1.50704 * 120.00481 * 0.02562 * 3 2 1 6 6 C 1.52997 * 109.47291 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.46943 * 179.97438 * 6 5 3 8 8 O 1.42895 * 109.47108 * 179.97438 * 7 6 5 9 9 C 1.35916 * 117.00064 * 180.02562 * 8 7 6 10 10 C 1.39141 * 120.47312 * 179.97438 * 9 8 7 11 11 C 1.38535 * 118.37448 * 179.97438 * 10 9 8 12 12 C 1.38259 * 119.21995 * 0.02562 * 11 10 9 13 13 N 1.31849 * 120.88686 * 359.97438 * 12 11 10 14 14 C 1.31845 * 121.78024 * 359.69874 * 13 12 11 15 15 C 1.46497 * 120.00432 * 180.02562 * 2 1 3 16 16 H 1.09002 * 110.91399 * 170.51224 * 15 2 1 17 17 C 1.55151 * 111.00623 * 46.60663 * 15 2 1 18 18 C 1.54320 * 102.94334 * 277.43135 * 17 15 2 19 19 N 1.47027 * 107.27334 * 337.80272 * 18 17 15 20 20 C 1.36929 * 125.65463 * 178.97337 * 19 18 17 21 21 H 1.08003 * 120.00350 * 179.97438 * 20 19 18 22 22 C 1.38819 * 119.99970 * 359.97438 * 20 19 18 23 23 N 1.31620 * 119.99766 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00218 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47166 * 59.99875 * 24 22 20 26 26 H 1.48501 * 109.47162 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.46947 * 299.99777 * 24 22 20 28 28 C 1.47423 * 108.69771 * 358.94803 * 19 18 17 29 29 H 1.09001 * 109.47209 * 263.94367 * 1 2 3 30 30 H 1.09003 * 109.47593 * 23.95065 * 1 2 3 31 31 H 1.09009 * 109.46707 * 143.94898 * 1 2 3 32 32 H 1.09000 * 109.46453 * 299.99776 * 5 3 2 33 33 H 1.09003 * 109.47195 * 59.99213 * 5 3 2 34 34 H 1.09000 * 109.47246 * 299.99360 * 6 5 3 35 35 H 1.08993 * 109.47435 * 60.00077 * 6 5 3 36 36 H 1.09002 * 109.47327 * 299.99885 * 7 6 5 37 37 H 1.09003 * 109.47184 * 59.99503 * 7 6 5 38 38 H 1.08001 * 120.81104 * 359.97438 * 10 9 8 39 39 H 1.08001 * 120.39097 * 180.02562 * 11 10 9 40 40 H 1.08000 * 119.55702 * 179.97438 * 12 11 10 41 41 H 1.07998 * 119.65672 * 180.29606 * 14 13 12 42 42 H 1.08995 * 110.71977 * 159.06502 * 17 15 2 43 43 H 1.09001 * 110.72028 * 35.79299 * 17 15 2 44 44 H 1.09005 * 109.88400 * 218.38885 * 18 17 15 45 45 H 1.09003 * 109.88629 * 97.22164 * 18 17 15 46 46 H 0.96994 * 120.00135 * 180.02562 * 23 22 20 47 47 H 1.08996 * 110.36886 * 142.96549 * 28 19 18 48 48 H 1.09005 * 110.36401 * 265.28278 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1387 1.1672 0.0000 4 8 3.3516 1.1674 0.0005 5 6 1.3852 2.4724 0.0006 6 6 2.3794 3.6353 0.0011 7 6 1.6143 4.9603 0.0011 8 8 2.5428 6.0465 0.0021 9 6 2.0232 7.3024 0.0028 10 6 2.8616 8.4129 0.0044 11 6 2.2854 9.6728 0.0044 12 6 0.9074 9.7848 0.0034 13 7 0.1411 8.7118 0.0020 14 6 0.6496 7.4954 -0.0046 15 6 2.1976 -1.2686 -0.0006 16 1 3.2618 -1.1033 -0.1683 17 6 1.6140 -2.2474 -1.0535 18 6 0.4132 -2.8745 -0.3144 19 7 0.6573 -2.7173 1.1270 20 6 -0.1835 -3.1248 2.1280 21 1 0.0881 -2.9632 3.1607 22 6 -1.3851 -3.7457 1.8154 23 7 -1.7164 -3.9422 0.5568 24 14 -2.5318 -4.3023 3.1808 25 1 -2.9358 -3.1291 3.9969 26 1 -3.7391 -4.9314 2.5877 27 1 -1.8324 -5.2881 4.0435 28 6 1.9576 -2.0489 1.3160 29 1 -0.3634 -0.1084 1.0219 30 1 -0.3634 0.9392 -0.4172 31 1 -0.3633 -0.8309 -0.6049 32 1 0.7583 2.5302 -0.8892 33 1 0.7588 2.5299 0.8908 34 1 3.0060 3.5773 0.8911 35 1 3.0060 3.5781 -0.8888 36 1 0.9879 5.0182 -0.8891 37 1 0.9872 5.0178 0.8908 38 1 3.9352 8.2955 0.0056 39 1 2.9055 10.5571 0.0052 40 1 0.4525 10.7643 0.0039 41 1 -0.0102 6.6404 -0.0104 42 1 2.3457 -3.0108 -1.3176 43 1 1.2817 -1.7070 -1.9399 44 1 0.3358 -3.9328 -0.5639 45 1 -0.5050 -2.3576 -0.5934 46 1 -2.5562 -4.3757 0.3383 47 1 1.9117 -1.3620 2.1611 48 1 2.7450 -2.7871 1.4684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567929221.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:11 Heat of formation + Delta-G solvation = -1.966782 kcal Electronic energy + Delta-G solvation = -28054.174741 eV Core-core repulsion = 24110.780294 eV Total energy + Delta-G solvation = -3943.394447 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.94241 -39.93346 -38.57045 -37.53420 -34.32150 -34.10530 -32.65368 -32.10064 -30.59172 -29.35037 -28.33955 -27.42148 -25.78656 -24.53653 -24.09615 -23.39104 -22.06770 -20.43291 -20.13086 -18.79463 -18.32605 -17.33673 -17.00454 -16.97459 -16.78107 -16.64837 -15.67997 -15.54584 -14.83986 -14.68760 -14.37085 -14.19528 -13.89767 -13.77919 -13.55759 -13.39384 -12.87122 -12.66599 -12.64687 -12.42649 -12.00631 -11.94201 -11.79827 -11.73267 -11.63170 -11.46108 -10.98776 -10.94908 -10.92190 -10.74959 -10.27984 -10.20406 -10.10298 -9.96882 -9.81933 -9.69924 -9.41708 -8.82599 -8.71712 -8.19257 -6.85616 -5.77761 -3.10514 0.72504 0.91151 2.63680 2.84378 3.35606 3.38149 3.41550 3.41854 3.42498 4.11355 4.27596 4.43585 4.45107 4.54654 4.59769 4.65615 4.77630 4.89233 5.04455 5.10010 5.13612 5.17289 5.33720 5.36662 5.42507 5.50145 5.58348 5.61849 5.69973 5.72028 5.83337 5.84873 6.00750 6.07243 6.15162 6.17557 6.31753 6.42189 6.48399 6.57303 6.64685 6.88273 7.03112 7.48619 7.51117 7.57401 7.73184 7.81060 8.18624 8.43076 9.16128 9.75843 10.42089 11.33897 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018134 B = 0.002018 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.682122 B =13872.231077 C =14860.232259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.588 5.588 3 C 0.511 3.489 4 O -0.555 6.555 5 C -0.136 4.136 6 C -0.101 4.101 7 C 0.056 3.944 8 O -0.306 6.306 9 C 0.085 3.915 10 C -0.112 4.112 11 C -0.132 4.132 12 C 0.055 3.945 13 N -0.450 5.450 14 C 0.015 3.985 15 C 0.123 3.877 16 H 0.098 0.902 17 C -0.157 4.157 18 C 0.173 3.827 19 N -0.602 5.602 20 C -0.225 4.225 21 H 0.076 0.924 22 C -0.007 4.007 23 N -0.923 5.923 24 Si 0.911 3.089 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.126 3.874 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.157 0.843 41 H 0.159 0.841 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.042 0.958 45 H 0.055 0.945 46 H 0.253 0.747 47 H 0.041 0.959 48 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.838 22.449 -4.259 23.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.319 5.319 3 C 0.299 3.701 4 O -0.434 6.434 5 C -0.176 4.176 6 C -0.139 4.139 7 C -0.019 4.019 8 O -0.218 6.218 9 C 0.037 3.963 10 C -0.138 4.138 11 C -0.152 4.152 12 C -0.103 4.103 13 N -0.160 5.160 14 C -0.143 4.143 15 C 0.019 3.981 16 H 0.116 0.884 17 C -0.196 4.196 18 C 0.048 3.952 19 N -0.329 5.329 20 C -0.354 4.354 21 H 0.094 0.906 22 C -0.203 4.203 23 N -0.571 5.571 24 Si 0.741 3.259 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.213 1.213 28 C -0.001 4.001 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.161 0.839 39 H 0.159 0.841 40 H 0.174 0.826 41 H 0.176 0.824 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.060 0.940 45 H 0.073 0.927 46 H 0.063 0.937 47 H 0.060 0.940 48 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 5.538 22.317 -4.237 23.381 hybrid contribution -0.129 -0.602 0.760 0.978 sum 5.410 21.715 -3.476 22.647 Atomic orbital electron populations 1.22180 0.78523 1.02554 1.04026 1.47703 1.07636 1.05280 1.71281 1.20406 0.87887 0.85311 0.76488 1.90665 1.13969 1.87526 1.51240 1.21536 0.99064 0.92248 1.04740 1.21223 0.97971 0.89340 1.05404 1.22976 0.91944 0.85167 1.01840 1.86097 1.36151 1.11617 1.87952 1.20110 0.93406 0.85840 0.96978 1.20995 1.00773 0.90169 1.01904 1.22035 0.96489 0.97433 0.99234 1.22680 0.90615 0.97509 0.99496 1.67538 1.40501 0.98486 1.09444 1.22992 0.91875 0.96137 1.03275 1.22258 0.96043 0.82439 0.97384 0.88385 1.23253 1.00607 0.98025 0.97679 1.21337 0.92494 0.98725 0.82609 1.44466 1.17246 1.68985 1.02187 1.18982 0.97571 1.31940 0.86873 0.90643 1.24763 0.98059 1.01095 0.96417 1.69930 1.23825 1.48131 1.15195 0.86218 0.80275 0.78470 0.80892 1.21240 1.21638 1.21252 1.21904 0.89627 0.93886 0.94695 0.91526 0.92610 0.88649 0.88652 0.88540 0.89880 0.89949 0.91504 0.91451 0.83940 0.84075 0.82551 0.82366 0.91203 0.91785 0.93970 0.92730 0.93696 0.94049 0.95369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.08 9.05 59.85 0.54 1.63 16 2 N -0.59 -9.60 2.91 -171.48 -0.50 -10.10 16 3 C 0.51 7.83 7.67 -10.98 -0.08 7.74 16 4 O -0.55 -10.20 15.39 5.55 0.09 -10.11 16 5 C -0.14 -1.43 4.17 -27.88 -0.12 -1.55 16 6 C -0.10 -1.04 4.87 -26.73 -0.13 -1.17 16 7 C 0.06 0.47 4.75 37.16 0.18 0.64 16 8 O -0.31 -3.15 10.15 -19.48 -0.20 -3.35 16 9 C 0.08 0.82 6.71 -39.07 -0.26 0.56 16 10 C -0.11 -0.91 10.13 -39.14 -0.40 -1.31 16 11 C -0.13 -0.88 10.11 -39.46 -0.40 -1.28 16 12 C 0.05 0.43 11.18 -17.54 -0.20 0.23 16 13 N -0.45 -4.65 10.36 -13.12 -0.14 -4.78 16 14 C 0.02 0.15 10.22 -17.37 -0.18 -0.03 16 15 C 0.12 2.20 3.64 -65.79 -0.24 1.96 16 16 H 0.10 1.75 7.07 -51.93 -0.37 1.39 16 17 C -0.16 -2.80 6.07 -24.90 -0.15 -2.95 16 18 C 0.17 3.86 4.35 -3.06 -0.01 3.85 16 19 N -0.60 -14.36 2.87 -170.07 -0.49 -14.84 16 20 C -0.23 -5.95 10.28 -15.06 -0.15 -6.11 16 21 H 0.08 1.96 7.83 -52.48 -0.41 1.55 16 22 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 23 N -0.92 -25.55 10.31 55.49 0.57 -24.98 16 24 Si 0.91 21.35 29.55 -169.99 -5.02 16.32 16 25 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 28 C 0.13 2.58 6.76 -2.53 -0.02 2.56 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.06 0.65 6.23 -51.93 -0.32 0.33 16 31 H 0.10 1.70 4.19 -51.92 -0.22 1.48 16 32 H 0.10 0.82 7.42 -51.93 -0.39 0.43 16 33 H 0.10 0.90 8.11 -51.93 -0.42 0.48 16 34 H 0.08 0.97 8.10 -51.93 -0.42 0.54 16 35 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 36 H 0.07 0.46 7.67 -51.93 -0.40 0.07 16 37 H 0.07 0.49 7.69 -51.93 -0.40 0.09 16 38 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.14 0.51 8.06 -52.49 -0.42 0.08 16 40 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.16 1.24 6.32 -52.49 -0.33 0.91 16 42 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.06 1.05 8.07 -51.93 -0.42 0.63 16 44 H 0.04 1.08 7.51 -51.93 -0.39 0.69 16 45 H 0.05 1.30 5.10 -51.93 -0.26 1.03 16 46 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 47 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 382.74 15.07 5.77 5.77 Total: -1.00 -31.92 382.74 -8.90 -40.81 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -7.26 Total: 0.77 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -1.71 Total: 4.50 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: -0.55 Total: -54.71 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -0.11 Total: -13.46 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.92 -8.90 -40.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567929221.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.846 kcal (2) G-P(sol) polarization free energy of solvation -31.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds