Wall clock time and date at job start Tue Mar 31 2020 17:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35736 * 117.00324 * 2 1 4 4 C 1.39291 * 120.84363 * 359.97438 * 3 2 1 5 5 C 1.37942 * 119.08979 * 179.97438 * 4 3 2 6 6 N 1.31980 * 120.82739 * 0.02562 * 5 4 3 7 7 C 1.31943 * 121.86278 * 359.97438 * 6 5 4 8 8 C 1.37997 * 120.81953 * 0.27908 * 7 6 5 9 9 C 1.50701 * 120.45146 * 179.70451 * 8 7 6 10 10 C 1.50697 * 109.47303 * 264.99571 * 9 8 7 11 11 O 1.21284 * 119.99698 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00329 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00049 * 180.02562 * 12 10 9 14 14 C 1.53007 * 109.47176 * 175.13279 * 13 12 10 15 15 N 1.46503 * 110.01058 * 303.90114 * 14 13 12 16 16 C 1.36939 * 120.00194 * 301.45956 * 15 14 13 17 17 H 1.07995 * 119.99937 * 354.60518 * 16 15 14 18 18 C 1.38815 * 119.99540 * 174.60859 * 16 15 14 19 19 N 1.31617 * 120.00318 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99656 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47068 * 59.99632 * 20 18 16 22 22 H 1.48495 * 109.47110 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.47181 * 300.00360 * 20 18 16 24 24 C 1.54265 * 110.03087 * 182.46117 * 14 13 12 25 25 C 1.54892 * 104.19437 * 217.10302 * 24 14 13 26 26 C 1.54892 * 102.74665 * 37.94163 * 25 24 14 27 27 C 1.53876 * 110.03310 * 65.29319 * 14 13 12 28 28 H 1.09002 * 109.47041 * 300.00008 * 1 2 3 29 29 H 1.09001 * 109.47426 * 60.00009 * 1 2 3 30 30 H 1.09002 * 109.47487 * 180.02562 * 1 2 3 31 31 H 1.07998 * 120.45216 * 359.97438 * 4 3 2 32 32 H 1.08006 * 119.58743 * 180.02562 * 5 4 3 33 33 H 1.08000 * 119.59037 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.47472 * 24.99789 * 9 8 7 35 35 H 1.09009 * 109.47021 * 144.99508 * 9 8 7 36 36 H 0.97005 * 119.99740 * 0.02562 * 12 10 9 37 37 H 1.09003 * 109.47495 * 295.12736 * 13 12 10 38 38 H 1.08998 * 109.47342 * 55.13165 * 13 12 10 39 39 H 0.97002 * 119.99630 * 121.46689 * 15 14 13 40 40 H 0.97004 * 119.99798 * 179.97438 * 19 18 16 41 41 H 1.08998 * 110.49011 * 335.77821 * 24 14 13 42 42 H 1.09001 * 110.48653 * 98.42776 * 24 14 13 43 43 H 1.09004 * 110.75295 * 279.62798 * 25 24 14 44 44 H 1.08998 * 110.75513 * 156.26151 * 25 24 14 45 45 H 1.09000 * 110.48368 * 203.37830 * 26 25 24 46 46 H 1.08995 * 110.48229 * 80.73797 * 26 25 24 47 47 H 1.09004 * 110.02813 * 238.57192 * 27 14 13 48 48 H 1.08998 * 110.02745 * 0.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3040 2.3887 -0.0005 5 6 1.9676 3.5979 0.0000 6 7 3.2866 3.6456 0.0005 7 6 4.0231 2.5509 0.0011 8 6 3.4345 1.3028 -0.0047 9 6 4.2838 0.0579 -0.0108 10 6 4.4642 -0.4203 -1.4284 11 8 3.9538 0.1901 -2.3438 12 7 5.1936 -1.5255 -1.6792 13 6 5.3694 -1.9900 -3.0575 14 6 6.3299 -3.1808 -3.0757 15 7 7.6001 -2.8101 -2.4468 16 6 8.3321 -1.7659 -2.9457 17 1 8.0186 -1.2716 -3.8532 18 6 9.4772 -1.3429 -2.2848 19 7 9.8596 -1.9457 -1.1791 20 14 10.4754 0.0821 -2.9649 21 1 9.6253 1.2982 -3.0242 22 1 11.6419 0.3354 -2.0816 23 1 10.9529 -0.2550 -4.3302 24 6 6.5726 -3.6417 -4.5278 25 6 6.6610 -5.1848 -4.4268 26 6 5.5871 -5.5196 -3.3620 27 6 5.7033 -4.3749 -2.3345 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.2245 2.3566 -0.0014 32 1 1.4008 4.5173 0.0000 33 1 5.1000 2.6327 0.0019 34 1 5.2581 0.2805 0.4243 35 1 3.7933 -0.7195 0.5752 36 1 5.6021 -2.0134 -0.9471 37 1 4.4051 -2.2948 -3.4640 38 1 5.7803 -1.1824 -3.6634 39 1 7.9225 -3.3045 -1.6770 40 1 10.6600 -1.6502 -0.7175 41 1 5.7389 -3.3483 -5.1656 42 1 7.5078 -3.2301 -4.9074 43 1 7.6501 -5.4937 -4.0885 44 1 6.4159 -5.6490 -5.3820 45 1 5.8032 -6.4785 -2.8908 46 1 4.5943 -5.5294 -3.8116 47 1 6.3447 -4.6791 -1.5074 48 1 4.7148 -4.1060 -1.9622 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568237590.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:30 Heat of formation + Delta-G solvation = -35.610424 kcal Electronic energy + Delta-G solvation = -29338.139322 eV Core-core repulsion = 25393.285977 eV Total energy + Delta-G solvation = -3944.853345 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.82283 -39.25970 -38.28354 -37.99997 -34.03102 -33.25942 -33.24395 -31.25845 -30.65178 -28.66301 -28.24085 -27.76684 -27.08222 -24.40868 -23.23987 -22.96315 -22.31343 -20.47144 -19.61348 -18.61749 -18.37413 -17.21179 -16.99493 -16.71135 -15.96434 -15.81535 -15.45569 -15.03670 -14.74375 -14.64795 -14.55991 -14.30075 -14.07507 -13.66626 -13.31977 -13.27264 -13.08801 -12.86246 -12.56456 -12.40633 -12.11183 -11.74737 -11.55121 -11.43504 -11.27429 -11.06055 -10.75151 -10.72664 -10.62867 -10.52324 -10.23279 -10.13689 -9.85529 -9.63462 -9.56446 -9.45642 -9.14255 -8.90504 -8.69532 -8.34348 -7.00226 -5.79867 -3.08667 1.06538 1.33831 2.98950 3.19386 3.44145 3.48838 3.51131 3.64394 4.00522 4.40077 4.56937 4.58218 4.72569 4.83503 4.89650 4.98039 5.10081 5.12410 5.19011 5.22591 5.24118 5.37016 5.44082 5.57409 5.63971 5.70050 5.76936 5.80358 5.90273 5.94837 5.95742 6.04181 6.09320 6.19376 6.27243 6.31694 6.45372 6.53460 6.57771 6.63466 6.77855 6.83873 7.02675 7.07205 7.16344 7.71672 8.00932 8.15262 8.38854 8.81381 9.50792 10.04489 10.40074 11.42055 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010617 B = 0.003796 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.620573 B = 7375.062490 C = 9367.239620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.305 6.305 3 C 0.180 3.820 4 C -0.264 4.264 5 C 0.129 3.871 6 N -0.507 5.507 7 C 0.145 3.855 8 C -0.138 4.138 9 C -0.092 4.092 10 C 0.516 3.484 11 O -0.553 6.553 12 N -0.700 5.700 13 C 0.122 3.878 14 C 0.189 3.811 15 N -0.710 5.710 16 C -0.232 4.232 17 H 0.068 0.932 18 C -0.007 4.007 19 N -0.932 5.932 20 Si 0.900 3.100 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.287 1.287 24 C -0.132 4.132 25 C -0.117 4.117 26 C -0.121 4.121 27 C -0.126 4.126 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.102 0.898 31 H 0.136 0.864 32 H 0.155 0.845 33 H 0.162 0.838 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.402 0.598 37 H 0.048 0.952 38 H 0.065 0.935 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.051 0.949 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.058 0.942 47 H 0.068 0.932 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.034 -0.368 4.102 18.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.216 6.216 3 C 0.127 3.873 4 C -0.285 4.285 5 C -0.028 4.028 6 N -0.219 5.219 7 C -0.011 4.011 8 C -0.142 4.142 9 C -0.133 4.133 10 C 0.302 3.698 11 O -0.431 6.431 12 N -0.349 5.349 13 C -0.004 4.004 14 C 0.097 3.903 15 N -0.352 5.352 16 C -0.363 4.363 17 H 0.086 0.914 18 C -0.203 4.203 19 N -0.580 5.580 20 Si 0.731 3.269 21 H -0.212 1.212 22 H -0.218 1.218 23 H -0.214 1.214 24 C -0.172 4.172 25 C -0.155 4.155 26 C -0.158 4.158 27 C -0.164 4.164 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.120 0.880 31 H 0.154 0.846 32 H 0.172 0.828 33 H 0.179 0.821 34 H 0.125 0.875 35 H 0.120 0.880 36 H 0.236 0.764 37 H 0.066 0.934 38 H 0.084 0.916 39 H 0.219 0.781 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.087 0.913 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.824 0.785 3.380 18.158 hybrid contribution 0.262 -0.227 0.166 0.385 sum -17.561 0.558 3.546 17.924 Atomic orbital electron populations 1.23107 0.78073 1.04229 1.01422 1.86074 1.21595 1.26327 1.87595 1.19089 0.91826 0.84571 0.91838 1.22124 1.01220 0.93233 1.11925 1.22495 0.90417 0.96791 0.93118 1.67729 1.07013 1.31996 1.15143 1.22594 1.00405 0.86114 0.91964 1.19779 0.90761 0.96637 1.06977 1.20421 1.01062 0.95648 0.96176 1.20246 0.78631 0.80515 0.90458 1.90657 1.49568 1.56312 1.46609 1.45678 1.51538 1.27659 1.10037 1.21838 0.97681 0.98349 0.82559 1.20456 0.86934 0.90578 0.92326 1.42537 1.18867 1.37717 1.36072 1.19039 1.04046 1.07480 1.05761 0.91378 1.24659 0.98945 0.99444 0.97292 1.69637 1.26337 1.43349 1.18693 0.86382 0.79749 0.82809 0.77967 1.21243 1.21771 1.21353 1.22829 1.01750 0.95007 0.97657 1.22386 0.98970 0.96497 0.97600 1.22300 0.98776 0.97838 0.96917 1.22428 1.00311 0.95171 0.98447 0.92542 0.92410 0.87983 0.84617 0.82789 0.82055 0.87463 0.87961 0.76364 0.93411 0.91631 0.78130 0.93553 0.92986 0.90311 0.91403 0.92773 0.92387 0.92346 0.91295 0.92067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.84 101.05 0.99 1.21 16 2 O -0.31 -3.85 9.76 -18.92 -0.18 -4.04 16 3 C 0.18 2.46 6.70 -38.82 -0.26 2.20 16 4 C -0.26 -3.04 9.11 -39.30 -0.36 -3.40 16 5 C 0.13 1.55 11.17 -17.60 -0.20 1.36 16 6 N -0.51 -7.46 10.36 -13.33 -0.14 -7.59 16 7 C 0.14 2.15 10.84 -17.59 -0.19 1.95 16 8 C -0.14 -2.04 4.40 -104.34 -0.46 -2.50 16 9 C -0.09 -1.32 5.61 -29.04 -0.16 -1.48 16 10 C 0.52 9.29 7.82 -10.99 -0.09 9.21 16 11 O -0.55 -11.93 16.03 5.55 0.09 -11.84 16 12 N -0.70 -12.31 5.10 -60.29 -0.31 -12.62 16 13 C 0.12 2.27 3.99 -4.04 -0.02 2.25 16 14 C 0.19 3.41 0.68 -130.70 -0.09 3.32 16 15 N -0.71 -15.78 4.76 -46.19 -0.22 -16.00 16 16 C -0.23 -5.96 8.39 -15.06 -0.13 -6.09 16 17 H 0.07 1.78 7.23 -52.49 -0.38 1.40 16 18 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 19 N -0.93 -26.43 13.06 55.49 0.72 -25.70 16 20 Si 0.90 22.10 29.55 -169.99 -5.02 17.07 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 C -0.13 -2.28 5.94 -25.07 -0.15 -2.43 16 25 C -0.12 -1.75 6.91 -24.73 -0.17 -1.92 16 26 C -0.12 -1.62 6.83 -25.07 -0.17 -1.80 16 27 C -0.13 -1.89 5.80 -25.62 -0.15 -2.04 16 28 H 0.06 0.35 7.71 -51.93 -0.40 -0.05 16 29 H 0.06 0.43 7.71 -51.93 -0.40 0.03 16 30 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.14 1.13 6.47 -52.49 -0.34 0.79 16 32 H 0.15 1.33 8.06 -52.48 -0.42 0.91 16 33 H 0.16 2.18 8.06 -52.49 -0.42 1.76 16 34 H 0.11 1.39 8.06 -51.93 -0.42 0.97 16 35 H 0.10 1.26 7.76 -51.92 -0.40 0.86 16 36 H 0.40 6.69 7.99 -40.82 -0.33 6.36 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.07 1.42 7.49 -51.93 -0.39 1.03 16 39 H 0.38 9.12 7.28 -40.82 -0.30 8.82 16 40 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.05 0.83 7.85 -51.93 -0.41 0.42 16 42 H 0.08 1.56 7.12 -51.93 -0.37 1.19 16 43 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.07 1.08 7.44 -51.93 -0.39 0.69 16 48 H 0.06 0.86 7.55 -51.93 -0.39 0.47 16 LS Contribution 390.42 15.07 5.88 5.88 Total: -1.00 -32.49 390.42 -8.29 -40.78 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: -7.43 Total: 14.51 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -1.69 Total: -0.45 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: 0.06 Total: -61.92 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.10 Total: -15.88 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.49 -8.29 -40.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568237590.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.172 kcal (2) G-P(sol) polarization free energy of solvation -32.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds