Wall clock time and date at job start Tue Mar 31 2020 17:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35736 * 117.00324 * 2 1 4 4 C 1.39291 * 120.84363 * 359.97438 * 3 2 1 5 5 C 1.37942 * 119.08979 * 179.97438 * 4 3 2 6 6 N 1.31980 * 120.82739 * 0.02562 * 5 4 3 7 7 C 1.31943 * 121.86278 * 359.97438 * 6 5 4 8 8 C 1.37997 * 120.81953 * 0.27908 * 7 6 5 9 9 C 1.50701 * 120.45146 * 179.70451 * 8 7 6 10 10 C 1.50697 * 109.47303 * 264.99571 * 9 8 7 11 11 O 1.21284 * 119.99698 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00329 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00049 * 180.02562 * 12 10 9 14 14 C 1.53007 * 109.47176 * 175.13279 * 13 12 10 15 15 N 1.46503 * 110.01058 * 303.90114 * 14 13 12 16 16 C 1.36939 * 120.00194 * 301.45956 * 15 14 13 17 17 H 1.07995 * 119.99937 * 354.60518 * 16 15 14 18 18 C 1.38815 * 119.99540 * 174.60859 * 16 15 14 19 19 N 1.31617 * 120.00318 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99656 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47068 * 59.99632 * 20 18 16 22 22 H 1.48495 * 109.47110 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.47181 * 300.00360 * 20 18 16 24 24 C 1.54265 * 110.03087 * 182.46117 * 14 13 12 25 25 C 1.54892 * 104.19437 * 217.10302 * 24 14 13 26 26 C 1.54892 * 102.74665 * 37.94163 * 25 24 14 27 27 C 1.53876 * 110.03310 * 65.29319 * 14 13 12 28 28 H 1.09002 * 109.47041 * 300.00008 * 1 2 3 29 29 H 1.09001 * 109.47426 * 60.00009 * 1 2 3 30 30 H 1.09002 * 109.47487 * 180.02562 * 1 2 3 31 31 H 1.07998 * 120.45216 * 359.97438 * 4 3 2 32 32 H 1.08006 * 119.58743 * 180.02562 * 5 4 3 33 33 H 1.08000 * 119.59037 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.47472 * 24.99789 * 9 8 7 35 35 H 1.09009 * 109.47021 * 144.99508 * 9 8 7 36 36 H 0.97005 * 119.99740 * 0.02562 * 12 10 9 37 37 H 1.09003 * 109.47495 * 295.12736 * 13 12 10 38 38 H 1.08998 * 109.47342 * 55.13165 * 13 12 10 39 39 H 0.97002 * 119.99630 * 121.46689 * 15 14 13 40 40 H 0.97004 * 119.99798 * 179.97438 * 19 18 16 41 41 H 1.08998 * 110.49011 * 335.77821 * 24 14 13 42 42 H 1.09001 * 110.48653 * 98.42776 * 24 14 13 43 43 H 1.09004 * 110.75295 * 279.62798 * 25 24 14 44 44 H 1.08998 * 110.75513 * 156.26151 * 25 24 14 45 45 H 1.09000 * 110.48368 * 203.37830 * 26 25 24 46 46 H 1.08995 * 110.48229 * 80.73797 * 26 25 24 47 47 H 1.09004 * 110.02813 * 238.57192 * 27 14 13 48 48 H 1.08998 * 110.02745 * 0.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3040 2.3887 -0.0005 5 6 1.9676 3.5979 0.0000 6 7 3.2866 3.6456 0.0005 7 6 4.0231 2.5509 0.0011 8 6 3.4345 1.3028 -0.0047 9 6 4.2838 0.0579 -0.0108 10 6 4.4642 -0.4203 -1.4284 11 8 3.9538 0.1901 -2.3438 12 7 5.1936 -1.5255 -1.6792 13 6 5.3694 -1.9900 -3.0575 14 6 6.3299 -3.1808 -3.0757 15 7 7.6001 -2.8101 -2.4468 16 6 8.3321 -1.7659 -2.9457 17 1 8.0186 -1.2716 -3.8532 18 6 9.4772 -1.3429 -2.2848 19 7 9.8596 -1.9457 -1.1791 20 14 10.4754 0.0821 -2.9649 21 1 9.6253 1.2982 -3.0242 22 1 11.6419 0.3354 -2.0816 23 1 10.9529 -0.2550 -4.3302 24 6 6.5726 -3.6417 -4.5278 25 6 6.6610 -5.1848 -4.4268 26 6 5.5871 -5.5196 -3.3620 27 6 5.7033 -4.3749 -2.3345 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.2245 2.3566 -0.0014 32 1 1.4008 4.5173 0.0000 33 1 5.1000 2.6327 0.0019 34 1 5.2581 0.2805 0.4243 35 1 3.7933 -0.7195 0.5752 36 1 5.6021 -2.0134 -0.9471 37 1 4.4051 -2.2948 -3.4640 38 1 5.7803 -1.1824 -3.6634 39 1 7.9225 -3.3045 -1.6770 40 1 10.6600 -1.6502 -0.7175 41 1 5.7389 -3.3483 -5.1656 42 1 7.5078 -3.2301 -4.9074 43 1 7.6501 -5.4937 -4.0885 44 1 6.4159 -5.6490 -5.3820 45 1 5.8032 -6.4785 -2.8908 46 1 4.5943 -5.5294 -3.8116 47 1 6.3447 -4.6791 -1.5074 48 1 4.7148 -4.1060 -1.9622 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568237590.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:29 Heat of formation + Delta-G solvation = -57.680467 kcal Electronic energy + Delta-G solvation = -29339.096351 eV Core-core repulsion = 25393.285977 eV Total energy + Delta-G solvation = -3945.810374 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.81889 -40.67417 -39.47746 -39.13724 -35.53148 -35.06048 -34.35432 -32.40258 -32.19767 -30.03101 -29.53651 -28.67004 -28.25187 -26.07634 -24.83630 -23.90406 -23.42375 -21.77060 -20.98421 -20.06971 -19.31472 -18.90846 -18.20016 -18.06937 -17.32187 -16.80671 -16.72454 -16.24471 -16.02606 -15.85910 -15.79774 -15.70153 -15.18715 -15.15819 -14.85577 -14.40791 -14.29811 -14.15338 -13.97979 -13.63134 -13.21386 -13.15531 -12.92897 -12.78896 -12.47306 -12.45117 -12.37016 -12.16946 -12.11135 -11.87174 -11.71929 -11.57084 -11.36766 -11.31207 -10.99262 -10.81668 -10.53670 -10.10889 -9.86913 -9.73177 -8.92870 -7.89508 -5.14487 0.07578 0.34571 1.44999 1.47120 1.51534 1.76651 2.18553 2.39250 2.57981 2.87827 3.41698 3.46239 3.64853 3.78164 3.82428 3.86740 3.91390 3.95106 4.10833 4.16652 4.23505 4.35060 4.36167 4.41722 4.47500 4.60036 4.62550 4.67636 4.69407 4.75829 4.79342 4.88441 4.92623 4.99713 5.05843 5.07058 5.15470 5.19997 5.28211 5.41434 5.50977 5.57597 5.59880 5.63526 5.71056 6.21859 6.34382 6.72269 7.01695 7.38450 7.42164 8.15472 8.40553 9.32504 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010617 B = 0.003796 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.620573 B = 7375.062490 C = 9367.239620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.324 6.324 3 C 0.171 3.829 4 C -0.258 4.258 5 C 0.123 3.877 6 N -0.533 5.533 7 C 0.126 3.874 8 C -0.161 4.161 9 C -0.083 4.083 10 C 0.512 3.488 11 O -0.591 6.591 12 N -0.697 5.697 13 C 0.129 3.871 14 C 0.185 3.815 15 N -0.713 5.713 16 C -0.215 4.215 17 H 0.059 0.941 18 C -0.060 4.060 19 N -0.958 5.958 20 Si 0.946 3.054 21 H -0.291 1.291 22 H -0.295 1.295 23 H -0.285 1.285 24 C -0.133 4.133 25 C -0.113 4.113 26 C -0.112 4.112 27 C -0.119 4.119 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.120 0.880 31 H 0.171 0.829 32 H 0.189 0.811 33 H 0.160 0.840 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.407 0.593 37 H 0.062 0.938 38 H 0.028 0.972 39 H 0.377 0.623 40 H 0.248 0.752 41 H 0.067 0.933 42 H 0.046 0.954 43 H 0.049 0.951 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.064 0.936 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.690 -1.296 4.326 21.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.235 6.235 3 C 0.116 3.884 4 C -0.279 4.279 5 C -0.033 4.033 6 N -0.245 5.245 7 C -0.029 4.029 8 C -0.164 4.164 9 C -0.123 4.123 10 C 0.300 3.700 11 O -0.473 6.473 12 N -0.346 5.346 13 C 0.003 3.997 14 C 0.095 3.905 15 N -0.353 5.353 16 C -0.347 4.347 17 H 0.077 0.923 18 C -0.252 4.252 19 N -0.609 5.609 20 Si 0.777 3.223 21 H -0.218 1.218 22 H -0.221 1.221 23 H -0.211 1.211 24 C -0.174 4.174 25 C -0.150 4.150 26 C -0.149 4.149 27 C -0.157 4.157 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.138 0.862 31 H 0.188 0.812 32 H 0.205 0.795 33 H 0.177 0.823 34 H 0.134 0.866 35 H 0.141 0.859 36 H 0.243 0.757 37 H 0.080 0.920 38 H 0.046 0.954 39 H 0.210 0.790 40 H 0.057 0.943 41 H 0.085 0.915 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.097 0.903 47 H 0.082 0.918 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -20.508 -0.168 3.590 20.820 hybrid contribution 0.931 0.057 0.023 0.933 sum -19.577 -0.112 3.612 19.908 Atomic orbital electron populations 1.23446 0.75744 1.05970 1.02649 1.86045 1.24051 1.25997 1.87386 1.19294 0.91759 0.85732 0.91566 1.22483 1.02894 0.92179 1.10301 1.23119 0.89789 0.98543 0.91832 1.67731 1.08494 1.32088 1.16225 1.22670 1.00697 0.86639 0.92879 1.19866 0.91791 0.96421 1.08346 1.20380 1.01914 0.96283 0.93691 1.20902 0.77607 0.79850 0.91665 1.90627 1.51142 1.57350 1.48174 1.45694 1.51358 1.27802 1.09758 1.21701 0.98105 0.97116 0.82785 1.20706 0.85111 0.91583 0.93133 1.42595 1.20101 1.36768 1.35851 1.19154 1.03615 1.07225 1.04710 0.92302 1.25149 1.00368 1.01613 0.98115 1.69735 1.26680 1.44676 1.19800 0.85631 0.78506 0.80713 0.77403 1.21847 1.22076 1.21119 1.22792 1.00641 0.96975 0.96948 1.22354 0.98819 0.94409 0.99443 1.22292 0.99179 0.97717 0.95755 1.22373 1.00559 0.94299 0.98488 0.90450 0.91932 0.86165 0.81181 0.79455 0.82268 0.86590 0.85888 0.75703 0.92026 0.95398 0.78967 0.94271 0.91467 0.93559 0.93180 0.90460 0.90622 0.90284 0.91767 0.90514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.84 113.37 1.12 1.32 16 2 O -0.32 -7.58 9.76 -90.60 -0.88 -8.47 16 3 C 0.17 4.44 6.70 22.76 0.15 4.59 16 4 C -0.26 -5.38 9.11 22.45 0.20 -5.17 16 5 C 0.12 2.77 11.17 84.60 0.95 3.71 16 6 N -0.53 -15.53 10.36 -196.08 -2.03 -17.57 16 7 C 0.13 3.81 10.84 84.62 0.92 4.73 16 8 C -0.16 -4.72 4.40 -19.68 -0.09 -4.81 16 9 C -0.08 -2.33 5.61 29.10 0.16 -2.17 16 10 C 0.51 18.53 7.82 87.66 0.69 19.21 16 11 O -0.59 -25.93 16.03 -3.04 -0.05 -25.98 16 12 N -0.70 -24.42 5.10 -463.06 -2.36 -26.79 16 13 C 0.13 4.80 3.99 86.38 0.34 5.15 16 14 C 0.19 6.57 0.68 4.33 0.00 6.57 16 15 N -0.71 -31.99 4.76 -300.06 -1.43 -33.42 16 16 C -0.21 -11.25 8.39 84.03 0.70 -10.54 16 17 H 0.06 3.17 7.23 -2.91 -0.02 3.14 16 18 C -0.06 -3.29 5.50 84.86 0.47 -2.82 16 19 N -0.96 -55.29 13.06 21.65 0.28 -55.00 16 20 Si 0.95 46.42 29.55 68.60 2.03 48.45 16 21 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16 22 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 23 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 24 C -0.13 -4.52 5.94 31.67 0.19 -4.33 16 25 C -0.11 -3.13 6.91 31.89 0.22 -2.91 16 26 C -0.11 -2.64 6.83 31.67 0.22 -2.42 16 27 C -0.12 -3.34 5.80 31.32 0.18 -3.16 16 28 H 0.08 0.69 7.71 -2.39 -0.02 0.67 16 29 H 0.06 0.76 7.71 -2.39 -0.02 0.74 16 30 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.17 2.21 6.47 -2.91 -0.02 2.19 16 32 H 0.19 2.72 8.06 -2.91 -0.02 2.70 16 33 H 0.16 4.56 8.06 -2.91 -0.02 4.54 16 34 H 0.12 3.02 8.06 -2.39 -0.02 3.00 16 35 H 0.12 2.90 7.76 -2.38 -0.02 2.88 16 36 H 0.41 13.38 7.99 -92.70 -0.74 12.64 16 37 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.03 1.24 7.49 -2.39 -0.02 1.22 16 39 H 0.38 18.06 7.28 -92.71 -0.67 17.39 16 40 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 41 H 0.07 2.05 7.85 -2.39 -0.02 2.03 16 42 H 0.05 1.85 7.12 -2.39 -0.02 1.84 16 43 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 44 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.06 1.89 7.44 -2.39 -0.02 1.87 16 48 H 0.08 1.93 7.55 -2.39 -0.02 1.91 16 Total: -1.00 -71.96 390.42 1.55 -70.41 By element: Atomic # 1 Polarization: 41.83 SS G_CDS: -0.43 Total: 41.39 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 6.42 Total: 6.96 kcal Atomic # 7 Polarization: -127.23 SS G_CDS: -5.54 Total: -132.77 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -0.93 Total: -34.44 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -71.96 1.55 -70.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568237590.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.730 kcal (2) G-P(sol) polarization free energy of solvation -71.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds