Wall clock time and date at job start Tue Mar 31 2020 17:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35737 * 116.99694 * 2 1 4 4 C 1.39283 * 120.84851 * 359.97438 * 3 2 1 5 5 C 1.37955 * 119.09590 * 180.02562 * 4 3 2 6 6 N 1.31975 * 120.82022 * 0.02562 * 5 4 3 7 7 C 1.31948 * 121.86227 * 359.72483 * 6 5 4 8 8 C 1.37992 * 120.82718 * 0.53342 * 7 6 5 9 9 C 1.50697 * 120.45861 * 179.75119 * 8 7 6 10 10 C 1.50703 * 109.47043 * 264.72575 * 9 8 7 11 11 O 1.21273 * 120.00460 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99298 * 180.02562 * 10 9 8 13 13 C 1.46505 * 119.99638 * 179.97438 * 12 10 9 14 14 H 1.09003 * 110.01151 * 33.61234 * 13 12 10 15 15 C 1.53864 * 110.03474 * 272.16777 * 13 12 10 16 16 C 1.54262 * 106.60024 * 240.71569 * 15 13 12 17 17 C 1.54889 * 104.19760 * 23.60749 * 16 15 13 18 18 C 1.54267 * 110.02929 * 154.99778 * 13 12 10 19 19 H 1.09006 * 110.48262 * 214.48568 * 18 13 12 20 20 C 1.52993 * 110.49109 * 336.99703 * 18 13 12 21 21 N 1.46496 * 109.47551 * 184.99762 * 20 18 13 22 22 C 1.36934 * 120.00548 * 179.97438 * 21 20 18 23 23 H 1.08004 * 119.99288 * 0.02562 * 22 21 20 24 24 C 1.38805 * 120.00389 * 180.02562 * 22 21 20 25 25 N 1.31624 * 120.00257 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 119.99929 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.47174 * 270.00277 * 26 24 22 28 28 H 1.48501 * 109.47062 * 30.00228 * 26 24 22 29 29 H 1.48499 * 109.46981 * 150.00382 * 26 24 22 30 30 H 1.08998 * 109.47219 * 299.99715 * 1 2 3 31 31 H 1.09003 * 109.47220 * 59.99816 * 1 2 3 32 32 H 1.09001 * 109.46813 * 179.97438 * 1 2 3 33 33 H 1.08000 * 120.45612 * 359.97438 * 4 3 2 34 34 H 1.07995 * 119.58911 * 180.02562 * 5 4 3 35 35 H 1.08006 * 119.58981 * 180.29565 * 7 6 5 36 36 H 1.08997 * 109.46762 * 144.72822 * 9 8 7 37 37 H 1.08998 * 109.46985 * 24.73021 * 9 8 7 38 38 H 0.96997 * 120.00359 * 359.97438 * 12 10 9 39 39 H 1.09001 * 110.03146 * 0.02562 * 15 13 12 40 40 H 1.09003 * 110.03551 * 121.42689 * 15 13 12 41 41 H 1.09001 * 110.48985 * 142.28920 * 16 15 13 42 42 H 1.09001 * 110.48745 * 264.80299 * 16 15 13 43 43 H 1.08996 * 110.76361 * 203.74370 * 17 16 15 44 44 H 1.09000 * 110.75247 * 80.36869 * 17 16 15 45 45 H 1.09004 * 109.46862 * 64.99960 * 20 18 13 46 46 H 1.09004 * 109.46998 * 305.00438 * 20 18 13 47 47 H 0.96999 * 119.99694 * 0.02562 * 21 20 18 48 48 H 0.97001 * 119.99885 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3039 2.3887 -0.0005 5 6 1.9675 3.5981 -0.0011 6 7 3.2864 3.6458 -0.0016 7 6 4.0229 2.5511 0.0038 8 6 3.4346 1.3029 -0.0008 9 6 4.2839 0.0580 -0.0003 10 6 4.4642 -0.4277 -1.4155 11 8 3.9530 0.1771 -2.3340 12 7 5.1927 -1.5349 -1.6602 13 6 5.3676 -2.0074 -3.0358 14 1 5.4051 -1.1594 -3.7196 15 6 4.2112 -2.9462 -3.4217 16 6 4.8453 -4.3121 -3.7562 17 6 6.1928 -4.3026 -2.9925 18 6 6.6642 -2.8355 -3.1493 19 1 7.1294 -2.6842 -4.1234 20 6 7.6373 -2.4630 -2.0290 21 7 8.9036 -3.1727 -2.2260 22 6 9.9333 -2.9947 -1.3410 23 1 9.8115 -2.3313 -0.4974 24 6 11.1333 -3.6667 -1.5279 25 7 12.1228 -3.4959 -0.6769 26 14 11.3435 -4.8146 -2.9866 27 1 10.9218 -6.1856 -2.6023 28 1 10.5063 -4.3376 -4.1165 29 1 12.7696 -4.8330 -3.4004 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 0.2244 2.3566 -0.0014 34 1 1.4006 4.5174 -0.0011 35 1 5.0999 2.6329 0.0080 36 1 3.7934 -0.7161 0.5898 37 1 5.2581 0.2831 0.4336 38 1 5.6013 -2.0188 -0.9255 39 1 3.5196 -3.0499 -2.5856 40 1 3.6871 -2.5544 -4.2934 41 1 4.2112 -5.1244 -3.4009 42 1 5.0135 -4.4021 -4.8294 43 1 6.9035 -4.9881 -3.4541 44 1 6.0429 -4.5498 -1.9415 45 1 7.2088 -2.7446 -1.0670 46 1 7.8167 -1.3880 -2.0460 47 1 9.0130 -3.7682 -2.9838 48 1 12.9613 -3.9658 -0.8075 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568531747.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:18 Heat of formation + Delta-G solvation = -54.837416 kcal Electronic energy + Delta-G solvation = -28803.031102 eV Core-core repulsion = 24857.344013 eV Total energy + Delta-G solvation = -3945.687090 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.85603 -40.98277 -39.23482 -39.05491 -36.38872 -34.59548 -34.23447 -33.55827 -32.19256 -30.60400 -29.74039 -28.49020 -27.88571 -26.27455 -23.89576 -23.82447 -23.73890 -21.69168 -21.41360 -20.68828 -19.58402 -19.29320 -18.30995 -18.15609 -17.15866 -16.81094 -16.55352 -16.27659 -16.24199 -15.95089 -15.75238 -15.57207 -15.32929 -15.16248 -14.91669 -14.70638 -14.55546 -14.36790 -14.14422 -13.74150 -13.51218 -13.26629 -12.96388 -12.85884 -12.60605 -12.47295 -12.28074 -12.13837 -12.04355 -11.99281 -11.82679 -11.69337 -11.57231 -11.46555 -10.95984 -10.93736 -10.52294 -10.10564 -10.00746 -9.72791 -9.27710 -8.01047 -5.34255 0.08369 0.35464 1.39087 1.42319 1.49619 1.70090 2.18144 2.25667 2.49932 2.85988 3.30602 3.36155 3.47070 3.65809 3.67321 3.80906 3.83134 3.90263 3.98690 4.07602 4.22020 4.34145 4.34875 4.37227 4.42637 4.48687 4.54379 4.58053 4.64051 4.64833 4.68869 4.77661 4.78759 4.87434 4.94405 5.03141 5.07189 5.11982 5.23236 5.24124 5.35863 5.48210 5.58170 5.62260 5.77966 6.20799 6.22782 6.59274 7.03243 7.09888 7.29866 7.86024 8.04834 9.20424 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015535 B = 0.002733 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.967750 B =10243.466821 C =11466.276339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.323 6.323 3 C 0.169 3.831 4 C -0.261 4.261 5 C 0.124 3.876 6 N -0.534 5.534 7 C 0.129 3.871 8 C -0.163 4.163 9 C -0.087 4.087 10 C 0.519 3.481 11 O -0.579 6.579 12 N -0.714 5.714 13 C 0.154 3.846 14 H 0.071 0.929 15 C -0.123 4.123 16 C -0.114 4.114 17 C -0.115 4.115 18 C -0.104 4.104 19 H 0.084 0.916 20 C 0.167 3.833 21 N -0.755 5.755 22 C -0.232 4.232 23 H 0.059 0.941 24 C -0.064 4.064 25 N -0.984 5.984 26 Si 0.953 3.047 27 H -0.275 1.275 28 H -0.252 1.252 29 H -0.299 1.299 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.119 0.881 33 H 0.167 0.833 34 H 0.185 0.815 35 H 0.168 0.832 36 H 0.121 0.879 37 H 0.126 0.874 38 H 0.411 0.589 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.037 0.963 46 H 0.016 0.984 47 H 0.366 0.634 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.678 5.041 -0.067 29.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.234 6.234 3 C 0.115 3.885 4 C -0.281 4.281 5 C -0.032 4.032 6 N -0.246 5.246 7 C -0.026 4.026 8 C -0.166 4.166 9 C -0.127 4.127 10 C 0.307 3.693 11 O -0.458 6.458 12 N -0.367 5.367 13 C 0.049 3.951 14 H 0.089 0.911 15 C -0.162 4.162 16 C -0.151 4.151 17 C -0.153 4.153 18 C -0.123 4.123 19 H 0.102 0.898 20 C 0.041 3.959 21 N -0.401 5.401 22 C -0.363 4.363 23 H 0.077 0.923 24 C -0.256 4.256 25 N -0.635 5.635 26 Si 0.780 3.220 27 H -0.201 1.201 28 H -0.177 1.177 29 H -0.226 1.226 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.137 0.863 33 H 0.184 0.816 34 H 0.202 0.798 35 H 0.185 0.815 36 H 0.140 0.860 37 H 0.144 0.856 38 H 0.249 0.751 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.055 0.945 46 H 0.034 0.966 47 H 0.199 0.801 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -28.494 6.135 -0.539 29.152 hybrid contribution 0.446 -1.386 -0.348 1.497 sum -28.048 4.749 -0.886 28.461 Atomic orbital electron populations 1.23424 0.75875 1.05878 1.02577 1.86039 1.23901 1.26041 1.87403 1.19330 0.91998 0.85565 0.91569 1.22473 1.02831 0.92378 1.10434 1.23074 0.89926 0.98415 0.91834 1.67741 1.08350 1.32352 1.16192 1.22766 1.00925 0.86404 0.92530 1.19891 0.91567 0.96624 1.08561 1.20447 1.02357 0.96089 0.93828 1.20869 0.77186 0.79674 0.91589 1.90662 1.49769 1.57804 1.47599 1.46209 1.52876 1.27999 1.09649 1.21457 0.94083 0.96267 0.83332 0.91057 1.22484 0.96921 0.95145 1.01602 1.22320 0.95641 0.96591 1.00588 1.22533 0.96973 0.94616 1.01129 1.22415 0.93961 0.96411 0.99503 0.89815 1.20700 0.84519 0.94283 0.96375 1.42693 1.12248 1.54744 1.30393 1.19040 0.92034 1.21094 1.04096 0.92321 1.25495 0.95888 1.02597 1.01601 1.69886 1.05179 1.48373 1.40086 0.85434 0.76740 0.79435 0.80347 1.20123 1.17678 1.22616 0.90667 0.91923 0.86272 0.81576 0.79823 0.81509 0.86049 0.85624 0.75112 0.91284 0.91384 0.90182 0.90812 0.91729 0.91103 0.94520 0.96603 0.80091 0.93403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.84 113.37 1.12 1.28 16 2 O -0.32 -6.21 9.77 -90.61 -0.88 -7.09 16 3 C 0.17 3.62 6.70 22.76 0.15 3.78 16 4 C -0.26 -4.49 9.11 22.45 0.20 -4.29 16 5 C 0.12 2.32 11.17 84.60 0.95 3.27 16 6 N -0.53 -13.04 10.36 -196.08 -2.03 -15.07 16 7 C 0.13 3.09 10.83 84.62 0.92 4.00 16 8 C -0.16 -3.77 4.40 -19.68 -0.09 -3.86 16 9 C -0.09 -1.77 5.61 29.10 0.16 -1.61 16 10 C 0.52 13.60 7.82 87.66 0.69 14.29 16 11 O -0.58 -19.60 15.69 -3.01 -0.05 -19.65 16 12 N -0.71 -17.11 4.34 -439.11 -1.91 -19.02 16 13 C 0.15 3.89 3.12 45.71 0.14 4.03 16 14 H 0.07 2.07 7.57 -2.39 -0.02 2.06 16 15 C -0.12 -2.61 6.59 31.31 0.21 -2.40 16 16 C -0.11 -2.16 6.83 31.67 0.22 -1.95 16 17 C -0.11 -2.75 6.19 31.89 0.20 -2.55 16 18 C -0.10 -2.84 2.84 -9.72 -0.03 -2.87 16 19 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 20 C 0.17 5.88 4.73 86.38 0.41 6.29 16 21 N -0.76 -33.82 5.30 -343.47 -1.82 -35.64 16 22 C -0.23 -12.92 10.47 84.03 0.88 -12.04 16 23 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 24 C -0.06 -3.75 5.50 84.86 0.47 -3.29 16 25 N -0.98 -62.66 13.97 21.65 0.30 -62.36 16 26 Si 0.95 44.76 27.74 68.60 1.90 46.66 16 27 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 28 H -0.25 -10.66 6.52 99.48 0.65 -10.01 16 29 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 30 H 0.07 0.49 7.71 -2.39 -0.02 0.47 16 31 H 0.06 0.58 7.71 -2.39 -0.02 0.56 16 32 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.17 1.70 6.47 -2.91 -0.02 1.69 16 34 H 0.18 2.15 8.06 -2.91 -0.02 2.12 16 35 H 0.17 3.47 8.06 -2.91 -0.02 3.45 16 36 H 0.12 2.06 7.77 -2.39 -0.02 2.04 16 37 H 0.13 2.07 8.06 -2.39 -0.02 2.05 16 38 H 0.41 8.82 6.56 -92.71 -0.61 8.21 16 39 H 0.07 1.46 7.92 -2.39 -0.02 1.45 16 40 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.07 1.71 7.97 -2.39 -0.02 1.69 16 45 H 0.04 1.22 6.41 -2.38 -0.02 1.20 16 46 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.37 15.68 5.50 -92.71 -0.51 15.17 16 48 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -77.60 388.77 1.91 -75.69 By element: Atomic # 1 Polarization: 34.59 SS G_CDS: -0.20 Total: 34.39 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: 6.59 Total: 2.09 kcal Atomic # 7 Polarization: -126.63 SS G_CDS: -5.45 Total: -132.09 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.93 Total: -26.74 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.90 Total: 46.66 kcal Total: -77.60 1.91 -75.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568531747.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.856 kcal (2) G-P(sol) polarization free energy of solvation -77.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds