Wall clock time and date at job start Tue Mar 31 2020 17:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35735 * 117.00165 * 2 1 4 4 C 1.39291 * 120.84772 * 0.02562 * 3 2 1 5 5 C 1.37943 * 119.09626 * 179.97438 * 4 3 2 6 6 N 1.31984 * 120.82203 * 359.97438 * 5 4 3 7 7 C 1.31943 * 121.86359 * 359.74980 * 6 5 4 8 8 C 1.37994 * 120.82342 * 0.53963 * 7 6 5 9 9 C 1.50693 * 120.45875 * 179.72475 * 8 7 6 10 10 C 1.50704 * 109.47354 * 264.72682 * 9 8 7 11 11 O 1.21287 * 119.99803 * 0.26859 * 10 9 8 12 12 N 1.34774 * 120.00147 * 179.97438 * 10 9 8 13 13 C 1.46921 * 120.63024 * 355.20958 * 12 10 9 14 14 C 1.53199 * 108.77343 * 233.58552 * 13 12 10 15 15 C 1.53043 * 109.31133 * 305.36227 * 14 13 12 16 16 C 1.53038 * 109.53533 * 61.36940 * 15 14 13 17 17 C 1.46928 * 120.62973 * 174.92487 * 12 10 9 18 18 H 1.08991 * 109.59286 * 246.20185 * 17 12 10 19 19 C 1.52999 * 109.58595 * 6.63053 * 17 12 10 20 20 N 1.46500 * 109.47276 * 181.26981 * 19 17 12 21 21 C 1.36939 * 120.00226 * 185.48260 * 20 19 17 22 22 H 1.07998 * 120.00021 * 0.02562 * 21 20 19 23 23 C 1.38816 * 119.99917 * 179.97438 * 21 20 19 24 24 N 1.31621 * 119.99923 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99833 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47172 * 60.00123 * 25 23 21 27 27 H 1.48491 * 109.47158 * 180.02562 * 25 23 21 28 28 H 1.48508 * 109.47046 * 300.00268 * 25 23 21 29 29 H 1.09000 * 109.46605 * 60.00479 * 1 2 3 30 30 H 1.09002 * 109.47083 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46782 * 300.00301 * 1 2 3 32 32 H 1.08005 * 120.44921 * 359.96954 * 4 3 2 33 33 H 1.07999 * 119.59104 * 180.02562 * 5 4 3 34 34 H 1.08004 * 119.59119 * 180.26402 * 7 6 5 35 35 H 1.09000 * 109.47800 * 144.72318 * 9 8 7 36 36 H 1.09010 * 109.47233 * 24.72149 * 9 8 7 37 37 H 1.08997 * 109.58871 * 353.37022 * 13 12 10 38 38 H 1.08996 * 109.58773 * 113.80356 * 13 12 10 39 39 H 1.08997 * 109.49600 * 65.31734 * 14 13 12 40 40 H 1.08998 * 109.49625 * 185.38613 * 14 13 12 41 41 H 1.08997 * 109.45741 * 181.38306 * 15 14 13 42 42 H 1.08999 * 109.46600 * 301.36094 * 15 14 13 43 43 H 1.08997 * 109.50373 * 58.58424 * 16 15 14 44 44 H 1.08998 * 109.50069 * 178.65042 * 16 15 14 45 45 H 1.09004 * 109.47095 * 301.27121 * 19 17 12 46 46 H 1.09000 * 109.47456 * 61.26760 * 19 17 12 47 47 H 0.96999 * 119.99570 * 5.48901 * 20 19 17 48 48 H 0.96998 * 119.99265 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3040 2.3887 0.0005 5 6 1.9676 3.5980 0.0011 6 7 3.2866 3.6457 0.0016 7 6 4.0231 2.5510 0.0065 8 6 3.4346 1.3028 0.0002 9 6 4.2838 0.0579 -0.0004 10 6 4.4647 -0.4262 -1.4160 11 8 3.9583 0.1828 -2.3346 12 7 5.1941 -1.5325 -1.6619 13 6 5.9051 -2.2175 -0.5738 14 6 7.3786 -2.3676 -0.9654 15 6 7.4728 -3.0735 -2.3201 16 6 6.7731 -2.2286 -3.3872 17 6 5.2882 -2.0801 -3.0220 18 1 4.8011 -3.0544 -3.0583 19 6 4.6087 -1.1267 -4.0070 20 7 4.6774 -1.6895 -5.3578 21 6 4.2326 -0.9591 -6.4273 22 1 3.8316 0.0320 -6.2751 23 6 4.2982 -1.4922 -7.7074 24 7 4.7875 -2.6999 -7.8930 25 14 3.6922 -0.4955 -9.1664 26 1 4.4710 0.7652 -9.2625 27 1 3.8696 -1.2837 -10.4123 28 1 2.2534 -0.1759 -8.9841 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.2245 2.3566 0.0005 33 1 1.4008 4.5173 0.0019 34 1 5.1000 2.6327 0.0110 35 1 3.7932 -0.7169 0.5887 36 1 5.2581 0.2824 0.4340 37 1 5.8282 -1.6289 0.3404 38 1 5.4672 -3.2028 -0.4145 39 1 7.8385 -1.3819 -1.0359 40 1 7.8974 -2.9580 -0.2102 41 1 8.5209 -3.2035 -2.5896 42 1 6.9907 -4.0489 -2.2557 43 1 7.2387 -1.2442 -3.4350 44 1 6.8613 -2.7201 -4.3560 45 1 3.5652 -0.9927 -3.7218 46 1 5.1169 -0.1626 -3.9888 47 1 5.0379 -2.5796 -5.4946 48 1 4.8336 -3.0722 -8.7875 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570086462.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:13 Heat of formation + Delta-G solvation = -8.608676 kcal Electronic energy + Delta-G solvation = -29688.245414 eV Core-core repulsion = 25744.562953 eV Total energy + Delta-G solvation = -3943.682461 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.99209 -40.05004 -38.31287 -37.17218 -34.78283 -33.45166 -32.62875 -31.83158 -31.32497 -29.68676 -28.33481 -27.62923 -25.93963 -24.31417 -23.32025 -23.03793 -22.47647 -20.99509 -20.66487 -18.89086 -18.40675 -17.29086 -17.06231 -16.66758 -15.94938 -15.85411 -15.43494 -15.06858 -14.84916 -14.46378 -14.40587 -14.30444 -14.11316 -13.71956 -13.66360 -13.32105 -13.14657 -13.06910 -12.87112 -12.65277 -12.37183 -11.99758 -11.83670 -11.73436 -11.54314 -11.32041 -10.96279 -10.87031 -10.76277 -10.63537 -10.48087 -10.31198 -9.95894 -9.62802 -9.59857 -9.27268 -8.93632 -8.76780 -8.59625 -8.22450 -6.70701 -5.62264 -2.87984 0.97196 1.26644 2.90494 2.95838 3.14381 3.54170 3.57013 3.59768 3.73536 4.29357 4.49166 4.62233 4.67130 4.71261 4.76370 4.82277 4.89538 4.91984 4.95364 5.05549 5.10492 5.18334 5.28081 5.29460 5.40226 5.43981 5.46770 5.60636 5.66179 5.72239 5.79811 5.85462 5.88177 5.93129 6.05659 6.06758 6.29093 6.33333 6.35899 6.43060 6.62994 6.83647 7.02183 7.19314 7.37383 7.67457 7.88044 7.92124 8.48912 8.60940 9.68380 10.28302 10.63434 11.61406 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009171 B = 0.003969 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3052.462075 B = 7053.625304 C = 8944.764670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.305 6.305 3 C 0.184 3.816 4 C -0.262 4.262 5 C 0.133 3.867 6 N -0.508 5.508 7 C 0.145 3.855 8 C -0.147 4.147 9 C -0.088 4.088 10 C 0.510 3.490 11 O -0.507 6.507 12 N -0.609 5.609 13 C 0.109 3.891 14 C -0.134 4.134 15 C -0.121 4.121 16 C -0.125 4.125 17 C 0.141 3.859 18 H 0.069 0.931 19 C 0.165 3.835 20 N -0.738 5.738 21 C -0.223 4.223 22 H 0.068 0.932 23 C -0.019 4.019 24 N -0.940 5.940 25 Si 0.905 3.095 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.288 1.288 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.056 0.944 32 H 0.138 0.862 33 H 0.156 0.844 34 H 0.159 0.841 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.084 0.916 45 H 0.043 0.957 46 H 0.034 0.966 47 H 0.378 0.622 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.711 3.009 24.958 25.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.216 6.216 3 C 0.130 3.870 4 C -0.283 4.283 5 C -0.024 4.024 6 N -0.220 5.220 7 C -0.011 4.011 8 C -0.150 4.150 9 C -0.129 4.129 10 C 0.297 3.703 11 O -0.381 6.381 12 N -0.344 5.344 13 C -0.015 4.015 14 C -0.172 4.172 15 C -0.158 4.158 16 C -0.164 4.164 17 C 0.038 3.962 18 H 0.087 0.913 19 C 0.039 3.961 20 N -0.384 5.384 21 C -0.354 4.354 22 H 0.086 0.914 23 C -0.214 4.214 24 N -0.590 5.590 25 Si 0.737 3.263 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.215 1.215 29 H 0.079 0.921 30 H 0.121 0.879 31 H 0.075 0.925 32 H 0.155 0.845 33 H 0.173 0.827 34 H 0.176 0.824 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.103 0.897 45 H 0.060 0.940 46 H 0.052 0.948 47 H 0.211 0.789 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.602 4.069 24.366 24.755 hybrid contribution -0.880 -0.644 -0.943 1.442 sum -2.482 3.426 23.422 23.801 Atomic orbital electron populations 1.23136 0.77753 1.04436 1.01536 1.86066 1.21883 1.26219 1.87405 1.19096 0.91833 0.84694 0.91331 1.22166 1.01437 0.93206 1.11463 1.22509 0.90335 0.96885 0.92661 1.67714 1.07096 1.31897 1.15255 1.22479 1.00127 0.86155 0.92361 1.19729 0.90829 0.96427 1.08012 1.20476 1.00414 0.95847 0.96172 1.20404 0.78745 0.80504 0.90652 1.90856 1.47799 1.54987 1.44501 1.48139 1.49607 1.27519 1.09109 1.21706 0.92350 0.97753 0.89664 1.21919 0.95803 1.01476 0.98033 1.21548 1.00750 0.98944 0.94576 1.22000 0.94619 1.00622 0.99139 1.21671 0.96156 0.97849 0.80518 0.91347 1.21264 0.98118 0.93271 0.83453 1.42574 1.76013 1.18525 1.01274 1.19191 1.32305 0.97981 0.85951 0.91375 1.24681 1.02575 0.96896 0.97254 1.69649 1.52511 1.15775 1.21037 0.86281 0.78550 0.79082 0.82427 1.21410 1.21798 1.21467 0.92126 0.87857 0.92545 0.84463 0.82671 0.82390 0.87945 0.88110 0.90077 0.91485 0.91544 0.91099 0.91904 0.91953 0.91761 0.89716 0.93955 0.94785 0.78877 0.93745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.84 101.05 0.99 1.21 16 2 O -0.31 -3.77 9.77 -18.91 -0.18 -3.95 16 3 C 0.18 2.37 6.70 -38.81 -0.26 2.11 16 4 C -0.26 -2.92 9.11 -39.30 -0.36 -3.27 16 5 C 0.13 1.51 11.17 -17.59 -0.20 1.32 16 6 N -0.51 -6.77 10.36 -13.33 -0.14 -6.91 16 7 C 0.14 1.82 10.83 -17.59 -0.19 1.63 16 8 C -0.15 -1.87 4.40 -104.34 -0.46 -2.33 16 9 C -0.09 -0.98 4.01 -29.04 -0.12 -1.10 16 10 C 0.51 7.96 7.60 -10.98 -0.08 7.88 16 11 O -0.51 -10.42 11.44 5.55 0.06 -10.35 16 12 N -0.61 -8.76 2.97 -164.96 -0.49 -9.25 16 13 C 0.11 1.06 6.33 -3.71 -0.02 1.04 16 14 C -0.13 -1.27 6.08 -26.61 -0.16 -1.44 16 15 C -0.12 -1.44 5.88 -26.69 -0.16 -1.60 16 16 C -0.13 -2.04 5.17 -26.38 -0.14 -2.18 16 17 C 0.14 2.51 3.03 -67.37 -0.20 2.30 16 18 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 19 C 0.17 3.85 4.10 -4.04 -0.02 3.84 16 20 N -0.74 -20.13 5.29 -59.91 -0.32 -20.45 16 21 C -0.22 -6.73 9.99 -15.06 -0.15 -6.88 16 22 H 0.07 2.07 7.83 -52.49 -0.41 1.66 16 23 C -0.02 -0.58 5.50 -17.43 -0.10 -0.68 16 24 N -0.94 -29.46 13.06 55.49 0.72 -28.74 16 25 Si 0.91 23.75 29.55 -169.99 -5.02 18.73 16 26 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 27 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 28 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 29 H 0.06 0.51 7.71 -51.93 -0.40 0.11 16 30 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.35 7.71 -51.93 -0.40 -0.05 16 32 H 0.14 1.15 6.47 -52.48 -0.34 0.81 16 33 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.16 1.61 8.06 -52.48 -0.42 1.19 16 35 H 0.10 1.00 7.73 -51.93 -0.40 0.59 16 36 H 0.10 0.80 7.41 -51.92 -0.38 0.42 16 37 H 0.08 0.58 5.96 -51.93 -0.31 0.27 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.08 1.58 7.30 -51.93 -0.38 1.20 16 45 H 0.04 1.09 6.34 -51.93 -0.33 0.76 16 46 H 0.03 0.87 7.13 -51.93 -0.37 0.50 16 47 H 0.38 10.49 6.90 -40.82 -0.28 10.21 16 48 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 381.56 15.07 5.75 5.75 Total: -1.00 -37.33 381.56 -8.60 -45.93 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -7.37 Total: 7.40 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -1.62 Total: 1.85 kcal Atomic # 7 Polarization: -65.13 SS G_CDS: -0.22 Total: -65.35 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.12 Total: -14.31 kcal Atomic # 14 Polarization: 23.75 SS G_CDS: -5.02 Total: 18.73 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.33 -8.60 -45.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570086462.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.320 kcal (2) G-P(sol) polarization free energy of solvation -37.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds