Wall clock time and date at job start Tue Mar 31 2020 17:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35735 * 117.00165 * 2 1 4 4 C 1.39291 * 120.84772 * 0.02562 * 3 2 1 5 5 C 1.37943 * 119.09626 * 179.97438 * 4 3 2 6 6 N 1.31984 * 120.82203 * 359.97438 * 5 4 3 7 7 C 1.31943 * 121.86359 * 359.74980 * 6 5 4 8 8 C 1.37994 * 120.82342 * 0.53963 * 7 6 5 9 9 C 1.50693 * 120.45875 * 179.72475 * 8 7 6 10 10 C 1.50704 * 109.47354 * 264.72682 * 9 8 7 11 11 O 1.21287 * 119.99803 * 0.26859 * 10 9 8 12 12 N 1.34774 * 120.00147 * 179.97438 * 10 9 8 13 13 C 1.46921 * 120.63024 * 355.20958 * 12 10 9 14 14 C 1.53199 * 108.77343 * 233.58552 * 13 12 10 15 15 C 1.53043 * 109.31133 * 305.36227 * 14 13 12 16 16 C 1.53038 * 109.53533 * 61.36940 * 15 14 13 17 17 C 1.46928 * 120.62973 * 174.92487 * 12 10 9 18 18 H 1.08991 * 109.59286 * 246.20185 * 17 12 10 19 19 C 1.52999 * 109.58595 * 6.63053 * 17 12 10 20 20 N 1.46500 * 109.47276 * 181.26981 * 19 17 12 21 21 C 1.36939 * 120.00226 * 185.48260 * 20 19 17 22 22 H 1.07998 * 120.00021 * 0.02562 * 21 20 19 23 23 C 1.38816 * 119.99917 * 179.97438 * 21 20 19 24 24 N 1.31621 * 119.99923 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99833 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47172 * 60.00123 * 25 23 21 27 27 H 1.48491 * 109.47158 * 180.02562 * 25 23 21 28 28 H 1.48508 * 109.47046 * 300.00268 * 25 23 21 29 29 H 1.09000 * 109.46605 * 60.00479 * 1 2 3 30 30 H 1.09002 * 109.47083 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46782 * 300.00301 * 1 2 3 32 32 H 1.08005 * 120.44921 * 359.96954 * 4 3 2 33 33 H 1.07999 * 119.59104 * 180.02562 * 5 4 3 34 34 H 1.08004 * 119.59119 * 180.26402 * 7 6 5 35 35 H 1.09000 * 109.47800 * 144.72318 * 9 8 7 36 36 H 1.09010 * 109.47233 * 24.72149 * 9 8 7 37 37 H 1.08997 * 109.58871 * 353.37022 * 13 12 10 38 38 H 1.08996 * 109.58773 * 113.80356 * 13 12 10 39 39 H 1.08997 * 109.49600 * 65.31734 * 14 13 12 40 40 H 1.08998 * 109.49625 * 185.38613 * 14 13 12 41 41 H 1.08997 * 109.45741 * 181.38306 * 15 14 13 42 42 H 1.08999 * 109.46600 * 301.36094 * 15 14 13 43 43 H 1.08997 * 109.50373 * 58.58424 * 16 15 14 44 44 H 1.08998 * 109.50069 * 178.65042 * 16 15 14 45 45 H 1.09004 * 109.47095 * 301.27121 * 19 17 12 46 46 H 1.09000 * 109.47456 * 61.26760 * 19 17 12 47 47 H 0.96999 * 119.99570 * 5.48901 * 20 19 17 48 48 H 0.96998 * 119.99265 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3040 2.3887 0.0005 5 6 1.9676 3.5980 0.0011 6 7 3.2866 3.6457 0.0016 7 6 4.0231 2.5510 0.0065 8 6 3.4346 1.3028 0.0002 9 6 4.2838 0.0579 -0.0004 10 6 4.4647 -0.4262 -1.4160 11 8 3.9583 0.1828 -2.3346 12 7 5.1941 -1.5325 -1.6619 13 6 5.9051 -2.2175 -0.5738 14 6 7.3786 -2.3676 -0.9654 15 6 7.4728 -3.0735 -2.3201 16 6 6.7731 -2.2286 -3.3872 17 6 5.2882 -2.0801 -3.0220 18 1 4.8011 -3.0544 -3.0583 19 6 4.6087 -1.1267 -4.0070 20 7 4.6774 -1.6895 -5.3578 21 6 4.2326 -0.9591 -6.4273 22 1 3.8316 0.0320 -6.2751 23 6 4.2982 -1.4922 -7.7074 24 7 4.7875 -2.6999 -7.8930 25 14 3.6922 -0.4955 -9.1664 26 1 4.4710 0.7652 -9.2625 27 1 3.8696 -1.2837 -10.4123 28 1 2.2534 -0.1759 -8.9841 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.2245 2.3566 0.0005 33 1 1.4008 4.5173 0.0019 34 1 5.1000 2.6327 0.0110 35 1 3.7932 -0.7169 0.5887 36 1 5.2581 0.2824 0.4340 37 1 5.8282 -1.6289 0.3404 38 1 5.4672 -3.2028 -0.4145 39 1 7.8385 -1.3819 -1.0359 40 1 7.8974 -2.9580 -0.2102 41 1 8.5209 -3.2035 -2.5896 42 1 6.9907 -4.0489 -2.2557 43 1 7.2387 -1.2442 -3.4350 44 1 6.8613 -2.7201 -4.3560 45 1 3.5652 -0.9927 -3.7218 46 1 5.1169 -0.1626 -3.9888 47 1 5.0379 -2.5796 -5.4946 48 1 4.8336 -3.0722 -8.7875 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570086462.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:11 Heat of formation + Delta-G solvation = -34.977220 kcal Electronic energy + Delta-G solvation = -29689.388840 eV Core-core repulsion = 25744.562953 eV Total energy + Delta-G solvation = -3944.825887 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.95932 -41.17868 -39.16555 -38.38211 -36.64688 -34.66868 -33.72581 -33.57428 -32.19116 -31.44018 -29.23370 -28.41051 -27.57311 -25.63010 -24.92439 -23.89582 -23.69866 -22.47174 -21.73045 -20.10643 -19.30541 -19.08820 -18.17235 -17.93184 -17.10705 -16.80671 -16.61780 -16.37589 -15.97870 -15.85584 -15.47957 -15.31676 -15.19388 -15.09569 -14.95391 -14.70910 -14.48200 -14.28953 -14.03889 -13.96269 -13.46693 -13.19462 -13.08216 -12.86833 -12.85021 -12.64885 -12.49389 -12.23695 -12.14455 -12.07590 -11.98695 -11.80133 -11.55387 -11.37607 -10.99700 -10.53251 -10.28649 -10.04621 -9.68876 -9.52157 -8.95854 -7.98090 -5.25927 0.09164 0.35952 1.40940 1.45113 1.51765 1.74102 2.01312 2.18088 2.54043 2.83416 3.34165 3.47508 3.63685 3.66402 3.83027 3.87939 3.88664 3.97847 4.07293 4.14666 4.17127 4.21904 4.30136 4.31551 4.32337 4.41775 4.45126 4.60377 4.65279 4.66661 4.72303 4.76901 4.87398 4.95771 4.99253 5.08304 5.10376 5.15000 5.21221 5.29564 5.32914 5.42872 5.50622 5.58491 5.71775 6.19931 6.24849 6.55133 7.03302 7.30261 7.32710 8.05677 8.33424 9.25271 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009171 B = 0.003969 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3052.462075 B = 7053.625304 C = 8944.764670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.324 6.324 3 C 0.166 3.834 4 C -0.265 4.265 5 C 0.123 3.877 6 N -0.534 5.534 7 C 0.132 3.868 8 C -0.164 4.164 9 C -0.074 4.074 10 C 0.502 3.498 11 O -0.568 6.568 12 N -0.606 5.606 13 C 0.100 3.900 14 C -0.128 4.128 15 C -0.115 4.115 16 C -0.118 4.118 17 C 0.150 3.850 18 H 0.066 0.934 19 C 0.181 3.819 20 N -0.745 5.745 21 C -0.245 4.245 22 H 0.057 0.943 23 C -0.070 4.070 24 N -0.966 5.966 25 Si 0.973 3.027 26 H -0.280 1.280 27 H -0.285 1.285 28 H -0.281 1.281 29 H 0.054 0.946 30 H 0.118 0.882 31 H 0.081 0.919 32 H 0.162 0.838 33 H 0.183 0.817 34 H 0.175 0.825 35 H 0.123 0.877 36 H 0.139 0.861 37 H 0.118 0.882 38 H 0.083 0.917 39 H 0.063 0.937 40 H 0.109 0.891 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.047 0.953 44 H 0.052 0.948 45 H 0.016 0.984 46 H 0.008 0.992 47 H 0.373 0.627 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.424 2.691 27.311 27.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.235 6.235 3 C 0.112 3.888 4 C -0.285 4.285 5 C -0.033 4.033 6 N -0.246 5.246 7 C -0.023 4.023 8 C -0.168 4.168 9 C -0.114 4.114 10 C 0.291 3.709 11 O -0.447 6.447 12 N -0.340 5.340 13 C -0.021 4.021 14 C -0.166 4.166 15 C -0.153 4.153 16 C -0.157 4.157 17 C 0.046 3.954 18 H 0.084 0.916 19 C 0.055 3.945 20 N -0.390 5.390 21 C -0.377 4.377 22 H 0.075 0.925 23 C -0.262 4.262 24 N -0.617 5.617 25 Si 0.801 3.199 26 H -0.207 1.207 27 H -0.210 1.210 28 H -0.208 1.208 29 H 0.073 0.927 30 H 0.136 0.864 31 H 0.099 0.901 32 H 0.180 0.820 33 H 0.200 0.800 34 H 0.192 0.808 35 H 0.141 0.859 36 H 0.157 0.843 37 H 0.136 0.864 38 H 0.101 0.899 39 H 0.082 0.918 40 H 0.127 0.873 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.034 0.966 46 H 0.026 0.974 47 H 0.205 0.795 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.299 3.735 26.783 27.074 hybrid contribution -1.027 -0.539 -1.663 2.027 sum -2.326 3.196 25.121 25.430 Atomic orbital electron populations 1.23393 0.76049 1.05771 1.02424 1.86027 1.23782 1.26273 1.87414 1.19424 0.92418 0.85394 0.91578 1.22467 1.02746 0.92663 1.10656 1.23019 0.90106 0.98198 0.91939 1.67731 1.08134 1.32511 1.16222 1.22823 1.01073 0.86164 0.92255 1.19974 0.91333 0.97073 1.08387 1.20481 1.02431 0.95615 0.92880 1.21284 0.77552 0.79928 0.92089 1.90830 1.50186 1.56909 1.46757 1.48250 1.49693 1.27443 1.08582 1.22151 0.91989 0.98806 0.89125 1.21923 0.95864 1.01648 0.97133 1.21533 1.00683 0.98542 0.94510 1.21874 0.93934 1.00338 0.99511 1.21278 0.96461 0.96038 0.81619 0.91612 1.21059 0.96913 0.93388 0.83112 1.42719 1.75686 1.18168 1.02421 1.19424 1.32850 0.97994 0.87399 0.92461 1.25499 1.02821 0.98104 0.99768 1.69794 1.53176 1.17079 1.21607 0.85236 0.78130 0.77741 0.78806 1.20676 1.21016 1.20756 0.92720 0.86420 0.90099 0.82048 0.80008 0.80754 0.85939 0.84276 0.86363 0.89913 0.91844 0.87275 0.90820 0.91139 0.93459 0.92942 0.96580 0.97441 0.79484 0.93771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.84 113.37 1.12 1.39 16 2 O -0.32 -7.78 9.77 -90.58 -0.88 -8.67 16 3 C 0.17 4.18 6.70 22.77 0.15 4.33 16 4 C -0.26 -5.69 9.11 22.45 0.20 -5.49 16 5 C 0.12 2.73 11.17 84.60 0.95 3.67 16 6 N -0.53 -14.07 10.36 -196.08 -2.03 -16.10 16 7 C 0.13 3.27 10.83 84.62 0.92 4.18 16 8 C -0.16 -4.08 4.40 -19.68 -0.09 -4.16 16 9 C -0.07 -1.49 4.01 29.10 0.12 -1.38 16 10 C 0.50 15.57 7.60 87.66 0.67 16.24 16 11 O -0.57 -24.49 11.44 -3.05 -0.03 -24.53 16 12 N -0.61 -16.89 2.97 -794.21 -2.36 -19.25 16 13 C 0.10 1.59 6.33 86.37 0.55 2.13 16 14 C -0.13 -1.94 6.08 30.68 0.19 -1.75 16 15 C -0.12 -2.52 5.88 30.62 0.18 -2.34 16 16 C -0.12 -3.94 5.17 30.82 0.16 -3.78 16 17 C 0.15 5.51 3.03 45.12 0.14 5.64 16 18 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 19 C 0.18 8.98 4.10 86.38 0.35 9.34 16 20 N -0.74 -42.86 5.29 -343.44 -1.82 -44.68 16 21 C -0.24 -15.40 9.99 84.03 0.84 -14.56 16 22 H 0.06 3.65 7.83 -2.91 -0.02 3.62 16 23 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 24 N -0.97 -61.75 13.06 21.65 0.28 -61.47 16 25 Si 0.97 49.59 29.55 68.60 2.03 51.62 16 26 H -0.28 -13.93 7.11 99.48 0.71 -13.22 16 27 H -0.28 -14.09 7.11 99.48 0.71 -13.39 16 28 H -0.28 -13.98 7.11 99.48 0.71 -13.27 16 29 H 0.05 0.90 7.71 -2.39 -0.02 0.89 16 30 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.08 0.84 7.71 -2.39 -0.02 0.82 16 32 H 0.16 2.47 6.47 -2.91 -0.02 2.45 16 33 H 0.18 2.77 8.06 -2.91 -0.02 2.74 16 34 H 0.18 3.41 8.06 -2.91 -0.02 3.39 16 35 H 0.12 2.00 7.73 -2.39 -0.02 1.98 16 36 H 0.14 1.68 7.41 -2.38 -0.02 1.66 16 37 H 0.12 1.05 5.96 -2.39 -0.01 1.04 16 38 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.11 0.95 8.14 -2.39 -0.02 0.94 16 41 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.05 2.06 7.30 -2.39 -0.02 2.04 16 45 H 0.02 0.90 6.34 -2.38 -0.02 0.89 16 46 H 0.01 0.41 7.13 -2.39 -0.02 0.40 16 47 H 0.37 21.80 6.90 -92.71 -0.64 21.16 16 48 H 0.25 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -86.38 381.56 2.42 -83.96 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: 0.33 Total: 29.48 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 6.90 Total: 9.63 kcal Atomic # 7 Polarization: -135.57 SS G_CDS: -5.92 Total: -141.50 kcal Atomic # 8 Polarization: -32.27 SS G_CDS: -0.92 Total: -33.19 kcal Atomic # 14 Polarization: 49.59 SS G_CDS: 2.03 Total: 51.62 kcal Total: -86.38 2.42 -83.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570086462.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.983 kcal (2) G-P(sol) polarization free energy of solvation -86.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds