Wall clock time and date at job start Tue Mar 31 2020 17:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 114.00096 * 2 1 4 4 C 1.52997 * 109.46676 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.78569 * 177.21311 * 4 3 2 6 6 C 1.52777 * 109.56240 * 56.98342 * 4 3 2 7 7 N 1.46898 * 109.42665 * 186.60863 * 6 4 3 8 8 C 1.46898 * 111.27086 * 62.96129 * 7 6 4 9 9 C 1.53242 * 109.33910 * 296.90013 * 8 7 6 10 10 N 1.47075 * 108.52006 * 53.82733 * 9 8 7 11 11 C 1.34783 * 120.87748 * 128.82281 * 10 9 8 12 12 O 1.21592 * 119.99668 * 174.80295 * 11 10 9 13 13 N 1.34771 * 119.99956 * 354.79897 * 11 10 9 14 14 C 1.46502 * 119.99678 * 185.09489 * 13 11 10 15 15 C 1.50704 * 109.46971 * 180.02562 * 14 13 11 16 16 C 1.38637 * 119.74991 * 270.29895 * 15 14 13 17 17 C 1.37611 * 120.25129 * 180.30728 * 16 15 14 18 18 C 1.40720 * 119.74174 * 359.41777 * 17 16 15 19 19 C 1.41391 * 120.24356 * 180.30164 * 18 17 16 20 20 H 1.08005 * 119.99777 * 207.08381 * 19 18 17 21 21 C 1.39941 * 120.00284 * 27.08683 * 19 18 17 22 22 N 1.30825 * 120.00059 * 7.43318 * 21 19 18 23 23 Si 1.86796 * 120.00176 * 187.43436 * 21 19 18 24 24 H 1.48498 * 109.47508 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.47420 * 119.99920 * 23 21 19 26 26 H 1.48506 * 109.47062 * 239.99756 * 23 21 19 27 27 C 1.40715 * 119.50877 * 0.28384 * 18 17 16 28 28 C 1.37617 * 119.74864 * 359.97438 * 27 18 17 29 29 H 1.08997 * 109.47408 * 59.99770 * 1 2 3 30 30 H 1.08997 * 109.47392 * 180.02562 * 1 2 3 31 31 H 1.09010 * 109.46951 * 299.99909 * 1 2 3 32 32 H 1.08998 * 109.47009 * 60.00277 * 3 2 1 33 33 H 1.08999 * 109.46771 * 299.99803 * 3 2 1 34 34 H 1.09005 * 109.57025 * 66.54985 * 6 4 3 35 35 H 1.09009 * 109.35532 * 306.53634 * 6 4 3 36 36 H 1.00898 * 111.00001 * 187.10977 * 7 6 4 37 37 H 1.09001 * 109.49626 * 176.93371 * 8 7 6 38 38 H 1.09006 * 109.51194 * 56.87017 * 8 7 6 39 39 H 1.09000 * 109.62282 * 294.11559 * 9 8 7 40 40 H 1.09001 * 109.78732 * 173.63367 * 9 8 7 41 41 H 0.96996 * 120.00450 * 5.09578 * 13 11 10 42 42 H 1.08999 * 109.46979 * 60.00259 * 14 13 11 43 43 H 1.08997 * 109.47473 * 300.00392 * 14 13 11 44 44 H 1.08003 * 119.87500 * 0.02562 * 16 15 14 45 45 H 1.07997 * 120.13150 * 179.69945 * 17 16 15 46 46 H 0.96998 * 120.00386 * 179.97438 * 22 21 19 47 47 H 1.08004 * 120.12283 * 180.02562 * 27 18 17 48 48 H 1.07996 * 119.87326 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1845 -0.0006 5 1 3.9842 2.1766 -0.0505 6 6 3.9829 0.3623 -1.2081 7 7 5.4281 0.1138 -1.1215 8 6 5.7612 -0.6859 0.0648 9 6 5.3880 0.0988 1.3270 10 7 3.9776 0.5034 1.2256 11 6 3.1121 0.2518 2.2277 12 8 1.9740 0.6757 2.1687 13 7 3.5081 -0.4696 3.2950 14 6 2.5392 -0.8381 4.3303 15 6 3.2317 -1.6358 5.4051 16 6 3.3046 -3.0161 5.2983 17 6 3.9289 -3.7552 6.2769 18 6 4.5053 -3.1037 7.3830 19 6 5.1549 -3.8521 8.3914 20 1 5.2068 -3.4686 9.3998 21 6 5.7307 -5.0898 8.0830 22 7 5.7972 -5.4885 6.8388 23 14 6.4043 -6.1726 9.4480 24 1 6.2097 -5.4982 10.7566 25 1 5.6860 -7.4724 9.4489 26 1 7.8533 -6.4080 9.2236 27 6 4.4306 -1.7017 7.4778 28 6 3.7966 -0.9833 6.4900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.7622 0.9097 -2.1246 35 1 3.4500 -0.5886 -1.2151 36 1 5.7702 -0.3267 -1.9623 37 1 6.8302 -0.8989 0.0716 38 1 5.2039 -1.6225 0.0407 39 1 6.0182 0.9845 1.4071 40 1 5.5263 -0.5298 2.2067 41 1 4.4345 -0.7449 3.3777 42 1 1.7444 -1.4381 3.8871 43 1 2.1125 0.0650 4.7665 44 1 2.8659 -3.5137 4.4460 45 1 3.9804 -4.8308 6.1940 46 1 6.1966 -6.3461 6.6250 47 1 4.8698 -1.1914 8.3223 48 1 3.7377 0.0927 6.5609 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647569658.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:26 Heat of formation + Delta-G solvation = -24.510986 kcal Electronic energy + Delta-G solvation = -29223.516902 eV Core-core repulsion = 25279.144864 eV Total energy + Delta-G solvation = -3944.372037 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.52435 -38.10401 -37.38278 -37.18822 -34.69431 -33.72975 -33.34870 -31.96200 -30.13166 -29.32609 -27.89420 -26.78784 -26.05607 -25.03209 -23.71998 -22.40298 -21.36800 -21.03769 -20.04520 -19.34771 -17.90775 -17.37819 -16.63772 -16.18570 -15.81635 -15.62440 -15.35814 -15.14753 -14.84856 -14.69821 -14.30632 -14.10101 -13.90947 -13.82349 -13.65401 -13.10800 -12.97767 -12.50270 -12.42765 -12.03281 -12.01224 -11.83683 -11.65391 -11.55262 -11.41845 -11.32935 -11.14319 -11.00597 -10.88409 -10.65398 -10.38669 -9.73688 -9.69371 -9.42445 -9.32412 -8.96291 -8.80822 -8.52834 -8.19894 -7.55411 -7.38121 -6.76499 -4.47858 2.50768 2.87324 2.99997 3.03331 3.08090 3.15813 3.57791 3.87439 3.91697 4.04813 4.25240 4.62397 4.79192 4.84650 4.96783 5.10755 5.19872 5.26447 5.33836 5.48980 5.52714 5.60743 5.62478 5.64441 5.75765 5.83228 5.87067 5.97800 6.00308 6.05031 6.26729 6.32843 6.38893 6.58892 6.72666 6.88389 6.99414 7.01563 7.06580 7.19990 7.25338 7.32576 7.42569 7.54041 7.75857 7.98781 8.05080 8.22057 8.35198 8.57777 8.82151 8.88685 9.00476 10.13475 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017559 B = 0.002634 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.231424 B =10626.040684 C =11347.428435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.375 6.375 3 C 0.058 3.942 4 C 0.175 3.825 5 H 0.084 0.916 6 C 0.047 3.953 7 N -0.690 5.690 8 C 0.043 3.957 9 C 0.116 3.884 10 N -0.630 5.630 11 C 0.712 3.288 12 O -0.584 6.584 13 N -0.737 5.737 14 C 0.205 3.795 15 C -0.237 4.237 16 C -0.085 4.085 17 C -0.164 4.164 18 C 0.112 3.888 19 C -0.456 4.456 20 H 0.077 0.923 21 C 0.071 3.929 22 N -0.799 5.799 23 Si 0.913 3.087 24 H -0.261 1.261 25 H -0.272 1.272 26 H -0.274 1.274 27 C -0.225 4.225 28 C -0.074 4.074 29 H 0.027 0.973 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.099 0.901 33 H 0.031 0.969 34 H 0.081 0.919 35 H 0.048 0.952 36 H 0.344 0.656 37 H 0.086 0.914 38 H 0.039 0.961 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.393 0.607 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.087 0.913 45 H 0.128 0.872 46 H 0.279 0.721 47 H 0.093 0.907 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.346 8.448 -14.712 17.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.293 6.293 3 C -0.019 4.019 4 C 0.070 3.930 5 H 0.102 0.898 6 C -0.083 4.083 7 N -0.321 5.321 8 C -0.088 4.088 9 C -0.008 4.008 10 N -0.369 5.369 11 C 0.414 3.586 12 O -0.463 6.463 13 N -0.393 5.393 14 C 0.082 3.918 15 C -0.239 4.239 16 C -0.104 4.104 17 C -0.183 4.183 18 C 0.109 3.891 19 C -0.486 4.486 20 H 0.096 0.904 21 C -0.146 4.146 22 N -0.425 5.425 23 Si 0.738 3.262 24 H -0.185 1.185 25 H -0.198 1.198 26 H -0.199 1.199 27 C -0.245 4.245 28 C -0.093 4.093 29 H 0.045 0.955 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.117 0.883 33 H 0.049 0.951 34 H 0.099 0.901 35 H 0.067 0.933 36 H 0.162 0.838 37 H 0.104 0.896 38 H 0.057 0.943 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.229 0.771 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.106 0.894 45 H 0.146 0.854 46 H 0.090 0.910 47 H 0.111 0.889 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.875 8.959 -14.549 17.189 hybrid contribution 0.496 -1.441 0.217 1.539 sum -1.379 7.518 -14.332 16.243 Atomic orbital electron populations 1.22494 0.81742 1.01682 0.99207 1.87810 1.19096 1.27188 1.95242 1.22908 0.91155 0.86945 1.00919 1.21069 0.93494 0.95488 0.82946 0.89802 1.22253 0.87850 1.00277 0.97956 1.60285 1.14521 1.51699 1.05594 1.22305 1.01124 0.94640 0.90705 1.21688 0.82170 0.99330 0.97619 1.47213 1.09018 1.63446 1.17205 1.15901 0.83972 0.79020 0.79687 1.90736 1.18949 1.57079 1.79552 1.45915 1.13594 1.57242 1.22582 1.19761 0.89458 0.96984 0.85581 1.19088 1.12589 0.93629 0.98577 1.20614 0.99030 0.92931 0.97837 1.21549 1.00443 1.00297 0.96017 1.17712 0.88232 0.90830 0.92310 1.19692 1.30425 1.01552 0.96883 0.90436 1.25935 0.94562 0.97787 0.96302 1.69776 1.34242 1.19981 1.18530 0.86175 0.78819 0.79717 0.81502 1.18461 1.19755 1.19930 1.21028 1.08592 0.94235 1.00625 1.20410 0.97518 0.97016 0.94359 0.95467 0.90761 0.93749 0.88292 0.95083 0.90099 0.93348 0.83835 0.89576 0.94303 0.90882 0.89748 0.77099 0.92798 0.92760 0.89449 0.85445 0.90966 0.88925 0.89388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.57 10.77 101.05 1.09 1.66 16 2 O -0.37 -5.59 7.86 -59.02 -0.46 -6.05 16 3 C 0.06 0.75 4.68 37.16 0.17 0.92 16 4 C 0.17 2.10 3.42 -67.73 -0.23 1.87 16 5 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 6 C 0.05 0.49 5.89 -3.94 -0.02 0.46 16 7 N -0.69 -6.50 6.82 -113.76 -0.78 -7.27 16 8 C 0.04 0.43 6.70 -3.70 -0.02 0.40 16 9 C 0.12 1.33 6.60 -3.60 -0.02 1.30 16 10 N -0.63 -8.63 3.01 -170.88 -0.51 -9.15 16 11 C 0.71 11.90 7.77 -86.92 -0.68 11.22 16 12 O -0.58 -10.84 10.95 -18.51 -0.20 -11.04 16 13 N -0.74 -12.42 5.46 -66.41 -0.36 -12.79 16 14 C 0.20 3.79 5.79 -5.19 -0.03 3.76 16 15 C -0.24 -4.93 5.27 -104.33 -0.55 -5.48 16 16 C -0.09 -1.91 9.67 -39.66 -0.38 -2.29 16 17 C -0.16 -4.09 8.69 -38.87 -0.34 -4.43 16 18 C 0.11 2.87 5.59 -106.82 -0.60 2.27 16 19 C -0.46 -11.70 9.08 -37.74 -0.34 -12.05 16 20 H 0.08 1.92 7.86 -52.48 -0.41 1.51 16 21 C 0.07 1.72 5.32 -17.34 -0.09 1.63 16 22 N -0.80 -19.94 10.56 55.55 0.59 -19.35 16 23 Si 0.91 18.21 29.57 -169.99 -5.03 13.18 16 24 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 25 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 26 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 27 C -0.23 -5.30 9.80 -38.87 -0.38 -5.68 16 28 C -0.07 -1.59 9.67 -39.66 -0.38 -1.97 16 29 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.04 0.60 8.02 -51.92 -0.42 0.18 16 32 H 0.10 1.50 5.76 -52.54 -0.30 1.20 16 33 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.61 7.40 -51.92 -0.38 0.22 16 36 H 0.34 2.59 8.90 -39.29 -0.35 2.24 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.98 5.63 -51.93 -0.29 0.69 16 41 H 0.39 6.31 5.96 -40.82 -0.24 6.06 16 42 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 43 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 44 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 45 H 0.13 3.33 5.96 -52.49 -0.31 3.02 16 46 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 47 H 0.09 2.06 8.06 -52.48 -0.42 1.64 16 48 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 379.50 15.07 5.72 5.72 Total: -1.00 -28.33 379.50 -11.19 -39.52 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: -7.34 Total: 13.63 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -2.81 Total: -6.40 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -1.07 Total: -48.56 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.67 Total: -17.09 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -28.33 -11.19 -39.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647569658.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.009 kcal (2) G-P(sol) polarization free energy of solvation -28.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds