Wall clock time and date at job start Tue Mar 31 2020 17:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 114.00096 * 2 1 4 4 C 1.52997 * 109.46676 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.78569 * 177.21311 * 4 3 2 6 6 C 1.52777 * 109.56240 * 56.98342 * 4 3 2 7 7 N 1.46898 * 109.42665 * 186.60863 * 6 4 3 8 8 C 1.46898 * 111.27086 * 62.96129 * 7 6 4 9 9 C 1.53242 * 109.33910 * 296.90013 * 8 7 6 10 10 N 1.47075 * 108.52006 * 53.82733 * 9 8 7 11 11 C 1.34783 * 120.87748 * 128.82281 * 10 9 8 12 12 O 1.21592 * 119.99668 * 174.80295 * 11 10 9 13 13 N 1.34771 * 119.99956 * 354.79897 * 11 10 9 14 14 C 1.46502 * 119.99678 * 185.09489 * 13 11 10 15 15 C 1.50704 * 109.46971 * 180.02562 * 14 13 11 16 16 C 1.38637 * 119.74991 * 270.29895 * 15 14 13 17 17 C 1.37611 * 120.25129 * 180.30728 * 16 15 14 18 18 C 1.40720 * 119.74174 * 359.41777 * 17 16 15 19 19 C 1.41391 * 120.24356 * 180.30164 * 18 17 16 20 20 H 1.08005 * 119.99777 * 207.08381 * 19 18 17 21 21 C 1.39941 * 120.00284 * 27.08683 * 19 18 17 22 22 N 1.30825 * 120.00059 * 7.43318 * 21 19 18 23 23 Si 1.86796 * 120.00176 * 187.43436 * 21 19 18 24 24 H 1.48498 * 109.47508 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.47420 * 119.99920 * 23 21 19 26 26 H 1.48506 * 109.47062 * 239.99756 * 23 21 19 27 27 C 1.40715 * 119.50877 * 0.28384 * 18 17 16 28 28 C 1.37617 * 119.74864 * 359.97438 * 27 18 17 29 29 H 1.08997 * 109.47408 * 59.99770 * 1 2 3 30 30 H 1.08997 * 109.47392 * 180.02562 * 1 2 3 31 31 H 1.09010 * 109.46951 * 299.99909 * 1 2 3 32 32 H 1.08998 * 109.47009 * 60.00277 * 3 2 1 33 33 H 1.08999 * 109.46771 * 299.99803 * 3 2 1 34 34 H 1.09005 * 109.57025 * 66.54985 * 6 4 3 35 35 H 1.09009 * 109.35532 * 306.53634 * 6 4 3 36 36 H 1.00898 * 111.00001 * 187.10977 * 7 6 4 37 37 H 1.09001 * 109.49626 * 176.93371 * 8 7 6 38 38 H 1.09006 * 109.51194 * 56.87017 * 8 7 6 39 39 H 1.09000 * 109.62282 * 294.11559 * 9 8 7 40 40 H 1.09001 * 109.78732 * 173.63367 * 9 8 7 41 41 H 0.96996 * 120.00450 * 5.09578 * 13 11 10 42 42 H 1.08999 * 109.46979 * 60.00259 * 14 13 11 43 43 H 1.08997 * 109.47473 * 300.00392 * 14 13 11 44 44 H 1.08003 * 119.87500 * 0.02562 * 16 15 14 45 45 H 1.07997 * 120.13150 * 179.69945 * 17 16 15 46 46 H 0.96998 * 120.00386 * 179.97438 * 22 21 19 47 47 H 1.08004 * 120.12283 * 180.02562 * 27 18 17 48 48 H 1.07996 * 119.87326 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1845 -0.0006 5 1 3.9842 2.1766 -0.0505 6 6 3.9829 0.3623 -1.2081 7 7 5.4281 0.1138 -1.1215 8 6 5.7612 -0.6859 0.0648 9 6 5.3880 0.0988 1.3270 10 7 3.9776 0.5034 1.2256 11 6 3.1121 0.2518 2.2277 12 8 1.9740 0.6757 2.1687 13 7 3.5081 -0.4696 3.2950 14 6 2.5392 -0.8381 4.3303 15 6 3.2317 -1.6358 5.4051 16 6 3.3046 -3.0161 5.2983 17 6 3.9289 -3.7552 6.2769 18 6 4.5053 -3.1037 7.3830 19 6 5.1549 -3.8521 8.3914 20 1 5.2068 -3.4686 9.3998 21 6 5.7307 -5.0898 8.0830 22 7 5.7972 -5.4885 6.8388 23 14 6.4043 -6.1726 9.4480 24 1 6.2097 -5.4982 10.7566 25 1 5.6860 -7.4724 9.4489 26 1 7.8533 -6.4080 9.2236 27 6 4.4306 -1.7017 7.4778 28 6 3.7966 -0.9833 6.4900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.7622 0.9097 -2.1246 35 1 3.4500 -0.5886 -1.2151 36 1 5.7702 -0.3267 -1.9623 37 1 6.8302 -0.8989 0.0716 38 1 5.2039 -1.6225 0.0407 39 1 6.0182 0.9845 1.4071 40 1 5.5263 -0.5298 2.2067 41 1 4.4345 -0.7449 3.3777 42 1 1.7444 -1.4381 3.8871 43 1 2.1125 0.0650 4.7665 44 1 2.8659 -3.5137 4.4460 45 1 3.9804 -4.8308 6.1940 46 1 6.1966 -6.3461 6.6250 47 1 4.8698 -1.1914 8.3223 48 1 3.7377 0.0927 6.5609 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647569658.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:25 Heat of formation + Delta-G solvation = -41.990781 kcal Electronic energy + Delta-G solvation = -29224.274882 eV Core-core repulsion = 25279.144864 eV Total energy + Delta-G solvation = -3945.130018 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.66721 -39.67355 -38.72023 -38.19196 -36.27073 -35.14238 -34.56725 -33.03872 -31.77732 -31.14514 -29.03971 -28.22526 -27.17272 -25.97507 -25.34903 -23.37574 -22.88349 -22.48891 -21.74514 -20.52653 -19.23682 -19.01837 -17.71291 -17.25979 -17.11530 -16.84644 -16.75092 -16.32341 -15.89008 -15.84950 -15.65739 -15.49004 -15.35765 -15.26228 -14.84084 -14.39123 -14.19775 -14.12729 -13.81569 -13.50780 -13.38713 -13.25428 -12.98019 -12.78027 -12.72654 -12.46169 -12.44457 -12.28308 -12.25699 -12.04250 -11.84013 -11.50071 -11.25879 -11.12316 -10.83459 -10.11536 -9.89032 -9.70490 -9.39376 -9.23503 -9.21949 -8.57399 -6.39288 0.82142 1.14057 1.39481 1.44637 1.53700 1.78596 2.21166 2.31078 2.71031 2.99394 3.13836 3.20306 3.74439 3.89553 3.94775 4.04317 4.21119 4.24398 4.30882 4.34021 4.38566 4.43371 4.52178 4.60014 4.61717 4.68592 4.70436 4.78885 4.82709 4.86992 4.89808 5.01080 5.05607 5.10554 5.15727 5.36743 5.46999 5.57415 5.67101 5.69799 5.88866 5.90259 6.02205 6.11038 6.22311 6.36802 6.39887 6.45095 6.70161 6.93828 7.00866 7.08216 7.72045 8.34824 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017559 B = 0.002634 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.231424 B =10626.040684 C =11347.428435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.398 6.398 3 C 0.060 3.940 4 C 0.168 3.832 5 H 0.099 0.901 6 C 0.056 3.944 7 N -0.684 5.684 8 C 0.047 3.953 9 C 0.111 3.889 10 N -0.628 5.628 11 C 0.706 3.294 12 O -0.605 6.605 13 N -0.737 5.737 14 C 0.218 3.782 15 C -0.220 4.220 16 C -0.086 4.086 17 C -0.185 4.185 18 C 0.082 3.918 19 C -0.492 4.492 20 H 0.075 0.925 21 C 0.031 3.969 22 N -0.829 5.829 23 Si 0.985 3.015 24 H -0.259 1.259 25 H -0.266 1.266 26 H -0.266 1.266 27 C -0.237 4.237 28 C -0.071 4.071 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.028 0.972 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.105 0.895 35 H 0.025 0.975 36 H 0.358 0.642 37 H 0.108 0.892 38 H 0.021 0.979 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.397 0.603 42 H 0.047 0.953 43 H 0.057 0.943 44 H 0.099 0.901 45 H 0.110 0.890 46 H 0.286 0.714 47 H 0.099 0.901 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.555 9.374 -16.085 18.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.317 6.317 3 C -0.017 4.017 4 C 0.064 3.936 5 H 0.117 0.883 6 C -0.074 4.074 7 N -0.317 5.317 8 C -0.084 4.084 9 C -0.012 4.012 10 N -0.366 5.366 11 C 0.408 3.592 12 O -0.486 6.486 13 N -0.394 5.394 14 C 0.094 3.906 15 C -0.222 4.222 16 C -0.105 4.105 17 C -0.204 4.204 18 C 0.079 3.921 19 C -0.522 4.522 20 H 0.093 0.907 21 C -0.183 4.183 22 N -0.455 5.455 23 Si 0.806 3.194 24 H -0.183 1.183 25 H -0.191 1.191 26 H -0.191 1.191 27 C -0.256 4.256 28 C -0.090 4.090 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.046 0.954 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.123 0.877 35 H 0.044 0.956 36 H 0.177 0.823 37 H 0.126 0.874 38 H 0.039 0.961 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.234 0.766 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.117 0.883 45 H 0.128 0.872 46 H 0.097 0.903 47 H 0.118 0.882 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.063 9.903 -15.966 18.818 hybrid contribution 0.186 -1.601 0.508 1.690 sum -0.877 8.302 -15.458 17.568 Atomic orbital electron populations 1.22546 0.80926 1.02062 0.99585 1.87774 1.20165 1.28378 1.95354 1.22873 0.91726 0.86173 1.00953 1.21310 0.93138 0.96380 0.82758 0.88314 1.22155 0.88086 0.99136 0.98063 1.60283 1.13788 1.51575 1.06023 1.22272 1.02138 0.93556 0.90386 1.21860 0.81026 1.00032 0.98261 1.47293 1.09514 1.62882 1.16894 1.16038 0.84150 0.78938 0.80058 1.90753 1.19991 1.57812 1.80046 1.45697 1.13436 1.57669 1.22593 1.19498 0.89278 0.96526 0.85267 1.19274 1.10969 0.93140 0.98790 1.20758 0.98494 0.93708 0.97546 1.21473 1.02085 0.99730 0.97161 1.18035 0.89077 0.92024 0.92935 1.19919 1.32179 1.03151 0.96957 0.90694 1.26752 0.94383 0.98546 0.98630 1.69837 1.34832 1.20658 1.20198 0.85104 0.78316 0.77686 0.78278 1.18291 1.19068 1.19078 1.21210 1.09126 0.93734 1.01554 1.20661 0.96433 0.98308 0.93569 0.92999 0.90461 0.95366 0.90833 0.92392 0.87709 0.95644 0.82292 0.87408 0.96108 0.89501 0.90283 0.76613 0.93416 0.92474 0.88256 0.87237 0.90291 0.88241 0.86734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.10 10.77 113.37 1.22 2.33 16 2 O -0.40 -11.53 7.86 -126.23 -0.99 -12.52 16 3 C 0.06 1.46 4.68 71.98 0.34 1.80 16 4 C 0.17 3.71 3.42 44.81 0.15 3.87 16 5 H 0.10 1.91 8.14 -2.38 -0.02 1.90 16 6 C 0.06 1.03 5.89 86.23 0.51 1.54 16 7 N -0.68 -11.02 6.82 -513.83 -3.50 -14.52 16 8 C 0.05 0.85 6.70 86.38 0.58 1.43 16 9 C 0.11 2.35 6.60 86.35 0.57 2.92 16 10 N -0.63 -16.35 3.01 -812.81 -2.44 -18.79 16 11 C 0.71 23.05 7.77 179.05 1.39 24.45 16 12 O -0.60 -22.28 10.95 18.74 0.21 -22.07 16 13 N -0.74 -24.22 5.46 -482.29 -2.64 -26.85 16 14 C 0.22 7.87 5.79 85.63 0.50 8.37 16 15 C -0.22 -9.02 5.27 -19.67 -0.10 -9.12 16 16 C -0.09 -3.89 9.67 22.22 0.21 -3.68 16 17 C -0.18 -9.52 8.69 22.73 0.20 -9.33 16 18 C 0.08 4.31 5.59 -21.29 -0.12 4.19 16 19 C -0.49 -26.02 9.08 23.46 0.21 -25.80 16 20 H 0.07 3.83 7.86 -2.91 -0.02 3.81 16 21 C 0.03 1.51 5.32 85.26 0.45 1.96 16 22 N -0.83 -42.30 10.56 21.83 0.23 -42.07 16 23 Si 0.99 37.60 29.57 68.60 2.03 39.63 16 24 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 25 H -0.27 -9.78 7.11 99.48 0.71 -9.08 16 26 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 27 C -0.24 -11.21 9.80 22.73 0.22 -10.99 16 28 C -0.07 -2.97 9.67 22.22 0.21 -2.76 16 29 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.03 0.76 8.02 -2.38 -0.02 0.74 16 32 H 0.07 2.20 5.76 -12.08 -0.07 2.13 16 33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.03 0.60 7.40 -2.38 -0.02 0.58 16 36 H 0.36 4.33 8.90 -89.70 -0.80 3.53 16 37 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.02 0.46 8.14 -2.38 -0.02 0.44 16 39 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.08 1.75 5.63 -2.39 -0.01 1.73 16 41 H 0.40 12.39 5.96 -92.71 -0.55 11.83 16 42 H 0.05 1.80 8.08 -2.39 -0.02 1.78 16 43 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 44 H 0.10 4.17 8.06 -2.91 -0.02 4.15 16 45 H 0.11 5.98 5.96 -2.91 -0.02 5.96 16 46 H 0.29 13.22 8.30 -92.71 -0.77 12.45 16 47 H 0.10 4.46 8.06 -2.91 -0.02 4.44 16 48 H 0.11 4.17 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -62.22 379.50 -0.98 -63.20 By element: Atomic # 1 Polarization: 43.28 SS G_CDS: -0.42 Total: 42.85 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: 6.55 Total: -8.85 kcal Atomic # 7 Polarization: -93.89 SS G_CDS: -8.35 Total: -102.24 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: -0.79 Total: -34.59 kcal Atomic # 14 Polarization: 37.60 SS G_CDS: 2.03 Total: 39.63 kcal Total: -62.22 -0.98 -63.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647569658.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.211 kcal (2) G-P(sol) polarization free energy of solvation -62.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds