Wall clock time and date at job start Tue Mar 31 2020 17:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46889 * 1 3 3 C 1.46903 * 111.00058 * 2 1 4 4 H 1.08996 * 109.52406 * 324.91501 * 3 2 1 5 5 C 1.53042 * 109.49813 * 204.83850 * 3 2 1 6 6 C 1.53044 * 109.53772 * 178.68119 * 5 3 2 7 7 C 1.52758 * 109.38195 * 61.24221 * 6 5 3 8 8 N 1.46932 * 109.00531 * 305.58554 * 7 6 5 9 9 C 1.34776 * 120.62815 * 233.58163 * 8 7 6 10 10 O 1.21584 * 119.99940 * 174.37727 * 9 8 7 11 11 N 1.34780 * 120.00366 * 354.38522 * 9 8 7 12 12 C 1.46492 * 120.00102 * 184.96543 * 11 9 8 13 13 C 1.50706 * 109.47011 * 179.97438 * 12 11 9 14 14 C 1.38321 * 119.96371 * 269.97549 * 13 12 11 15 15 C 1.38278 * 120.13636 * 179.97438 * 14 13 12 16 16 C 1.38129 * 120.07027 * 359.76666 * 15 14 13 17 17 C 1.38858 * 119.92695 * 0.53360 * 16 15 14 18 18 O 1.35750 * 120.06806 * 179.72183 * 17 16 15 19 19 C 1.34834 * 116.99861 * 5.02241 * 18 17 16 20 20 H 1.08000 * 120.00148 * 354.96244 * 19 18 17 21 21 C 1.38651 * 119.99713 * 175.22996 * 19 18 17 22 22 N 1.31565 * 120.00112 * 359.72608 * 21 19 18 23 23 Si 1.86801 * 120.00053 * 179.72906 * 21 19 18 24 24 H 1.48493 * 109.47462 * 89.99951 * 23 21 19 25 25 H 1.48500 * 109.47259 * 210.00369 * 23 21 19 26 26 H 1.48504 * 109.46816 * 329.99755 * 23 21 19 27 27 C 1.38080 * 119.96447 * 90.00295 * 13 12 11 28 28 C 1.46924 * 118.73873 * 53.31241 * 8 7 6 29 29 H 1.08998 * 109.47261 * 60.00273 * 1 2 3 30 30 H 1.08999 * 109.47528 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47475 * 299.99958 * 1 2 3 32 32 H 1.00904 * 111.00512 * 236.04385 * 2 1 3 33 33 H 1.09004 * 109.46195 * 298.70299 * 5 3 2 34 34 H 1.09001 * 109.46140 * 58.65840 * 5 3 2 35 35 H 1.09003 * 109.49081 * 181.31387 * 6 5 3 36 36 H 1.08998 * 109.49332 * 301.38191 * 6 5 3 37 37 H 1.08994 * 109.50888 * 185.70550 * 7 6 5 38 38 H 1.08997 * 109.43541 * 65.42061 * 7 6 5 39 39 H 0.97008 * 119.99548 * 4.96709 * 11 9 8 40 40 H 1.08998 * 109.47350 * 60.00108 * 12 11 9 41 41 H 1.09003 * 109.47156 * 299.99589 * 12 11 9 42 42 H 1.08002 * 119.93302 * 0.02562 * 14 13 12 43 43 H 1.08005 * 119.96630 * 180.02562 * 15 14 13 44 44 H 1.07990 * 120.03658 * 180.25800 * 16 15 14 45 45 H 0.96996 * 119.99754 * 179.97438 * 22 21 19 46 46 H 1.07997 * 120.03374 * 0.02562 * 27 13 12 47 47 H 1.09007 * 109.58710 * 66.42959 * 28 8 7 48 48 H 1.08999 * 109.58458 * 186.85476 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3411 2.0128 -0.5905 5 6 3.4007 1.3792 -0.6060 6 6 3.9370 2.8122 -0.6366 7 6 4.0222 3.3522 0.7898 8 7 2.7088 3.2127 1.4335 9 6 2.1073 4.2754 2.0038 10 8 0.9781 4.1718 2.4425 11 7 2.7574 5.4531 2.0877 12 6 2.1479 6.5768 2.8031 13 6 3.0719 7.7662 2.7504 14 6 4.0190 7.9497 3.7417 15 6 4.8689 9.0395 3.6966 16 6 4.7776 9.9460 2.6583 17 6 3.8237 9.7679 1.6651 18 8 3.7277 10.6601 0.6465 19 6 4.6543 11.6385 0.6004 20 1 5.3774 11.7354 1.3967 21 6 4.6753 12.5237 -0.4666 22 7 3.7945 12.4056 -1.4367 23 14 5.9541 13.8839 -0.5267 24 1 7.1657 13.3935 -1.2314 25 1 5.3986 15.0540 -1.2530 26 1 6.3147 14.2858 0.8567 27 6 2.9716 8.6720 1.7130 28 6 2.0611 1.8939 1.4385 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8306 -0.5262 -0.7813 33 1 4.0605 0.7573 -0.0009 34 1 3.3605 0.9847 -1.6213 35 1 4.9284 2.8199 -1.0897 36 1 3.2646 3.4398 -1.2216 37 1 4.3068 4.4040 0.7644 38 1 4.7654 2.7838 1.3489 39 1 3.6289 5.5565 1.6743 40 1 1.9766 6.2960 3.8422 41 1 1.1977 6.8334 2.3346 42 1 4.0954 7.2399 4.5520 43 1 5.6077 9.1799 4.4718 44 1 5.4444 10.7946 2.6215 45 1 3.8089 13.0251 -2.1829 46 1 2.2314 8.5286 0.9399 47 1 2.6412 1.2042 2.0517 48 1 1.0521 1.9840 1.8410 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649837122.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:18 Heat of formation + Delta-G solvation = -23.657218 kcal Electronic energy + Delta-G solvation = -28160.731089 eV Core-core repulsion = 24216.396074 eV Total energy + Delta-G solvation = -3944.335015 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.54128 -39.18059 -38.25181 -36.79795 -35.53853 -34.48843 -32.59713 -32.34446 -30.91448 -29.89684 -29.09896 -26.48629 -25.46558 -25.26176 -24.63483 -22.42770 -21.73159 -21.20738 -20.78448 -19.66434 -18.51175 -17.58011 -16.98280 -16.49137 -15.97302 -15.72777 -15.24020 -15.15429 -14.86866 -14.70884 -14.54182 -14.41524 -14.07752 -13.73595 -13.62108 -13.58270 -13.37785 -13.11008 -12.96846 -12.67411 -12.38625 -12.13625 -12.02110 -11.78982 -11.68888 -11.40956 -11.31016 -11.22455 -10.94324 -10.82486 -10.74078 -10.70201 -10.48636 -10.09335 -9.42653 -9.11330 -8.91401 -8.90248 -8.53587 -8.26191 -7.34228 -6.50816 -4.10365 1.85758 2.25524 2.69289 3.08811 3.09492 3.14408 3.21920 3.78466 3.90836 3.97794 4.39077 4.50924 4.53359 4.63509 4.80833 4.93383 5.02268 5.05107 5.07030 5.16743 5.19180 5.25970 5.28335 5.48871 5.52106 5.54699 5.58347 5.62244 5.65852 5.76928 5.78519 5.84900 5.92016 5.95117 6.06549 6.23831 6.28148 6.54832 6.57571 6.66212 6.80860 6.89686 6.96813 6.99139 7.18704 7.26413 7.34396 7.69713 7.93296 7.96795 8.62010 8.94554 9.63371 10.66944 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016568 B = 0.002260 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.644549 B =12385.460347 C =13156.568188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.688 5.688 3 C 0.070 3.930 4 H 0.050 0.950 5 C -0.120 4.120 6 C -0.134 4.134 7 C 0.110 3.890 8 N -0.631 5.631 9 C 0.708 3.292 10 O -0.594 6.594 11 N -0.736 5.736 12 C 0.185 3.815 13 C -0.073 4.073 14 C -0.194 4.194 15 C -0.076 4.076 16 C -0.226 4.226 17 C 0.150 3.850 18 O -0.176 6.176 19 C -0.393 4.393 20 H 0.092 0.908 21 C 0.040 3.960 22 N -0.861 5.861 23 Si 0.941 3.059 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.267 1.267 27 C -0.170 4.170 28 C 0.143 3.857 29 H 0.023 0.977 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.343 0.657 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.398 0.602 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.107 0.893 43 H 0.109 0.891 44 H 0.128 0.872 45 H 0.271 0.729 46 H 0.118 0.882 47 H 0.071 0.929 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.341 -21.059 2.500 21.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.320 5.320 3 C -0.041 4.041 4 H 0.068 0.932 5 C -0.158 4.158 6 C -0.173 4.173 7 C -0.014 4.014 8 N -0.369 5.369 9 C 0.409 3.591 10 O -0.472 6.472 11 N -0.393 5.393 12 C 0.062 3.938 13 C -0.073 4.073 14 C -0.214 4.214 15 C -0.095 4.095 16 C -0.245 4.245 17 C 0.096 3.904 18 O -0.080 6.080 19 C -0.469 4.469 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.496 5.496 23 Si 0.766 3.234 24 H -0.199 1.199 25 H -0.202 1.202 26 H -0.192 1.192 27 C -0.190 4.190 28 C 0.019 3.981 29 H 0.041 0.959 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.161 0.839 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.235 0.765 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.125 0.875 43 H 0.127 0.873 44 H 0.145 0.855 45 H 0.080 0.920 46 H 0.136 0.864 47 H 0.089 0.911 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.312 -21.031 3.125 21.265 hybrid contribution 0.978 1.126 -1.224 1.930 sum 1.291 -19.905 1.901 20.038 Atomic orbital electron populations 1.22275 0.87394 1.01872 1.00900 1.60280 1.08124 1.13522 1.50041 1.21935 0.95752 0.89398 0.96990 0.93226 1.21699 0.95948 0.97249 1.00872 1.21836 1.02312 0.96325 0.96831 1.21563 0.84813 1.01761 0.93238 1.47221 1.20554 1.08731 1.60443 1.15827 0.84056 0.80209 0.78961 1.90895 1.17463 1.83760 1.55096 1.45442 1.23317 1.10863 1.59713 1.20009 0.94816 0.82398 0.96553 1.19288 0.97200 0.95395 0.95446 1.20487 0.99815 1.00417 1.00647 1.20750 0.97753 0.94012 0.96952 1.21240 1.03357 1.02809 0.97120 1.19328 0.93020 0.89401 0.88642 1.83986 1.48506 1.34521 1.40948 1.21323 1.10617 1.06745 1.08226 0.89031 1.25299 0.98096 0.98540 0.94562 1.70040 1.33632 1.36610 1.09302 0.85708 0.79434 0.79382 0.78893 1.19853 1.20226 1.19174 1.20095 1.03161 0.95124 1.00621 1.21322 0.99607 0.81640 0.95530 0.95866 0.91330 0.91295 0.83862 0.90718 0.91740 0.90058 0.91241 0.90044 0.91095 0.76528 0.91166 0.91004 0.87480 0.87283 0.85468 0.91954 0.86413 0.91065 0.89072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.50 60.06 0.63 0.82 16 2 N -0.69 -5.28 6.66 -113.89 -0.76 -6.04 16 3 C 0.07 0.61 2.64 -67.59 -0.18 0.43 16 4 H 0.05 0.52 7.80 -51.93 -0.41 0.12 16 5 C -0.12 -0.83 5.17 -26.69 -0.14 -0.97 16 6 C -0.13 -1.01 6.06 -26.83 -0.16 -1.17 16 7 C 0.11 0.96 6.36 -3.93 -0.02 0.93 16 8 N -0.63 -7.32 2.98 -178.77 -0.53 -7.85 16 9 C 0.71 10.56 8.29 -86.92 -0.72 9.84 16 10 O -0.59 -10.96 15.77 5.29 0.08 -10.88 16 11 N -0.74 -10.27 5.46 -66.42 -0.36 -10.63 16 12 C 0.19 2.82 5.80 -5.20 -0.03 2.79 16 13 C -0.07 -1.23 5.25 -104.65 -0.55 -1.78 16 14 C -0.19 -3.16 9.70 -39.54 -0.38 -3.54 16 15 C -0.08 -1.32 10.04 -39.61 -0.40 -1.72 16 16 C -0.23 -4.67 9.17 -39.39 -0.36 -5.03 16 17 C 0.15 3.47 6.65 -39.11 -0.26 3.21 16 18 O -0.18 -4.89 9.76 0.04 0.00 -4.89 16 19 C -0.39 -10.68 9.49 30.88 0.29 -10.39 16 20 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 21 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 22 N -0.86 -24.82 13.67 55.48 0.76 -24.06 16 23 Si 0.94 20.04 29.55 -169.99 -5.02 15.02 16 24 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 25 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 26 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 27 C -0.17 -3.43 9.65 -39.39 -0.38 -3.81 16 28 C 0.14 1.53 5.91 -3.72 -0.02 1.51 16 29 H 0.02 0.17 8.06 -51.93 -0.42 -0.25 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.59 7.56 -51.92 -0.39 0.20 16 32 H 0.34 2.07 8.42 -39.29 -0.33 1.74 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.71 5.65 -51.93 -0.29 0.42 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.40 4.97 5.96 -40.82 -0.24 4.73 16 40 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 41 H 0.07 1.15 8.09 -51.93 -0.42 0.73 16 42 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 43 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 44 H 0.13 2.64 5.63 -52.49 -0.30 2.35 16 45 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 46 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 47 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 48 H 0.09 1.17 6.47 -51.93 -0.34 0.84 16 LS Contribution 387.69 15.07 5.84 5.84 Total: -1.00 -31.97 387.69 -9.96 -41.93 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -7.19 Total: 9.46 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -2.78 Total: -7.90 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: -0.90 Total: -48.58 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: 0.08 Total: -15.77 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.97 -9.96 -41.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649837122.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.275 kcal (2) G-P(sol) polarization free energy of solvation -31.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds