Wall clock time and date at job start Tue Mar 31 2020 17:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00005 * 2 1 4 4 C 1.50694 * 109.47178 * 180.02562 * 3 2 1 5 5 C 1.38357 * 120.34880 * 270.02498 * 4 3 2 6 6 N 1.31924 * 121.08309 * 179.97438 * 5 4 3 7 7 C 1.31702 * 121.87501 * 359.67955 * 6 5 4 8 8 C 1.39516 * 120.56724 * 0.58018 * 7 6 5 9 9 C 1.47836 * 120.55879 * 179.73101 * 8 7 6 10 10 O 1.21559 * 119.99966 * 220.41830 * 9 8 7 11 11 N 1.34776 * 120.00072 * 40.42140 * 9 8 7 12 12 C 1.46926 * 120.62992 * 6.61713 * 11 9 8 13 13 C 1.53191 * 108.77345 * 126.37692 * 12 11 9 14 14 C 1.53030 * 109.31700 * 54.63614 * 13 12 11 15 15 C 1.53045 * 109.53856 * 298.63244 * 14 13 12 16 16 C 1.46930 * 120.63053 * 186.60422 * 11 9 8 17 17 H 1.09005 * 109.58967 * 113.69838 * 16 11 9 18 18 C 1.52998 * 109.58568 * 353.41026 * 16 11 9 19 19 N 1.46493 * 109.47087 * 67.89096 * 18 16 11 20 20 C 1.36937 * 119.99902 * 174.66330 * 19 18 16 21 21 H 1.07994 * 120.00260 * 0.02562 * 20 19 18 22 22 C 1.38816 * 119.99940 * 179.97438 * 20 19 18 23 23 N 1.31618 * 119.99964 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99871 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47309 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47231 * 120.00328 * 24 22 20 27 27 H 1.48504 * 109.47288 * 239.99813 * 24 22 20 28 28 C 1.38354 * 120.34902 * 89.99706 * 4 3 2 29 29 H 1.09002 * 109.46803 * 300.00433 * 1 2 3 30 30 H 1.09002 * 109.47021 * 59.99790 * 1 2 3 31 31 H 1.08992 * 109.47140 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47384 * 60.00113 * 3 2 1 33 33 H 1.08998 * 109.47181 * 300.00125 * 3 2 1 34 34 H 1.07997 * 119.45809 * 359.97438 * 5 4 3 35 35 H 1.08001 * 119.71048 * 180.29016 * 7 6 5 36 36 H 1.09007 * 109.58693 * 246.16375 * 12 11 9 37 37 H 1.08994 * 109.58429 * 6.58466 * 12 11 9 38 38 H 1.09008 * 109.49572 * 174.59206 * 13 12 11 39 39 H 1.09003 * 109.49532 * 294.67545 * 13 12 11 40 40 H 1.09003 * 109.46240 * 58.65371 * 14 13 12 41 41 H 1.09004 * 109.46222 * 178.62842 * 14 13 12 42 42 H 1.08998 * 109.50003 * 301.42152 * 15 14 13 43 43 H 1.08997 * 109.50009 * 181.31310 * 15 14 13 44 44 H 1.09006 * 109.46660 * 187.88863 * 18 16 11 45 45 H 1.08999 * 109.47284 * 307.88437 * 18 16 11 46 46 H 0.97004 * 120.00085 * 354.66653 * 19 18 16 47 47 H 0.97000 * 119.99921 * 179.97438 * 23 22 20 48 48 H 1.07998 * 120.85606 * 0.02562 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2099 1.1306 1.1930 6 7 5.5248 1.0259 1.2094 7 6 6.2314 0.9638 0.0997 8 6 5.6038 1.0194 -1.1451 9 6 6.3977 0.9557 -2.3906 10 8 6.1084 1.6672 -3.3328 11 7 7.4421 0.1086 -2.4815 12 6 7.7167 -0.8587 -1.4102 13 6 7.8063 -2.2601 -2.0224 14 6 8.8444 -2.2559 -3.1468 15 6 8.4100 -1.2778 -4.2409 16 6 8.3274 0.1349 -3.6538 17 1 9.3214 0.4668 -3.3538 18 6 7.7611 1.0939 -4.7028 19 7 7.8422 2.4683 -4.2022 20 6 7.4938 3.5144 -5.0142 21 1 7.1588 3.3262 -6.0235 22 6 7.5701 4.8167 -4.5397 23 7 7.9778 5.0460 -3.3094 24 14 7.0954 6.2437 -5.6477 25 1 6.6748 5.7227 -6.9732 26 1 5.9721 6.9956 -5.0327 27 1 8.2615 7.1475 -5.8177 28 6 4.2089 1.1315 -1.1949 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6887 1.8464 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 3.6688 1.1733 2.1267 35 1 7.3063 0.8737 0.1539 36 1 8.6616 -0.6100 -0.9268 37 1 6.9105 -0.8308 -0.6773 38 1 8.1044 -2.9741 -1.2546 39 1 6.8341 -2.5437 -2.4257 40 1 9.8109 -1.9483 -2.7476 41 1 8.9276 -3.2578 -3.5680 42 1 7.4322 -1.5705 -4.6233 43 1 9.1379 -1.2926 -5.0520 44 1 8.3388 1.0078 -5.6232 45 1 6.7199 0.8406 -4.9023 46 1 8.1427 2.6373 -3.2955 47 1 8.0314 5.9560 -2.9780 48 1 3.6900 1.1731 -2.1411 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661925737.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:51 Heat of formation + Delta-G solvation = -10.118091 kcal Electronic energy + Delta-G solvation = -29920.790400 eV Core-core repulsion = 25977.042485 eV Total energy + Delta-G solvation = -3943.747914 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.04024 -40.74449 -38.72413 -38.18636 -36.41476 -34.35411 -34.05049 -33.62434 -32.38905 -31.50676 -28.45006 -27.81597 -26.51934 -26.16012 -25.22980 -24.38485 -23.55708 -22.78101 -21.56236 -20.29756 -19.17933 -18.13519 -18.07395 -17.66662 -17.37946 -16.81810 -16.66979 -16.40437 -16.19339 -15.90296 -15.53184 -15.38598 -15.13219 -15.08483 -14.59865 -14.45807 -14.22482 -14.13768 -13.94486 -13.68331 -13.54746 -13.33511 -13.12689 -12.86341 -12.81053 -12.68976 -12.37362 -12.13277 -12.07681 -11.87957 -11.72888 -11.51038 -11.37501 -10.99676 -10.92824 -10.79327 -10.66206 -10.15733 -9.84929 -9.50388 -8.63528 -7.86096 -5.04734 -0.28884 0.04625 1.41778 1.43799 1.53380 1.93041 2.02887 2.55262 2.60085 3.02182 3.33230 3.47674 3.53732 3.73332 3.76295 3.81825 3.85619 3.88414 3.96218 4.08855 4.11928 4.30017 4.33640 4.38272 4.48505 4.51538 4.54918 4.56634 4.60547 4.62830 4.71992 4.87714 4.87881 4.94611 4.97776 5.04792 5.05660 5.13226 5.14487 5.24328 5.32171 5.48467 5.49798 5.52857 5.80863 6.14410 6.35044 6.54764 6.76190 7.39712 7.44317 8.20560 8.43467 9.38739 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.008220 B = 0.004637 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3405.626740 B = 6037.354518 C = 8230.679638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.409 6.409 3 C 0.110 3.890 4 C -0.147 4.147 5 C 0.132 3.868 6 N -0.496 5.496 7 C 0.133 3.867 8 C -0.180 4.180 9 C 0.518 3.482 10 O -0.496 6.496 11 N -0.605 5.605 12 C 0.097 3.903 13 C -0.127 4.127 14 C -0.112 4.112 15 C -0.119 4.119 16 C 0.147 3.853 17 H 0.068 0.932 18 C 0.162 3.838 19 N -0.703 5.703 20 C -0.211 4.211 21 H 0.062 0.938 22 C -0.083 4.083 23 N -0.973 5.973 24 Si 0.966 3.034 25 H -0.271 1.271 26 H -0.300 1.300 27 H -0.291 1.291 28 C -0.023 4.023 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.193 0.807 35 H 0.171 0.829 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.058 0.942 43 H 0.085 0.915 44 H 0.018 0.982 45 H 0.020 0.980 46 H 0.367 0.633 47 H 0.244 0.756 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.288 -18.427 10.296 22.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.329 6.329 3 C 0.034 3.966 4 C -0.149 4.149 5 C -0.025 4.025 6 N -0.204 5.204 7 C -0.024 4.024 8 C -0.185 4.185 9 C 0.304 3.696 10 O -0.368 6.368 11 N -0.341 5.341 12 C -0.025 4.025 13 C -0.166 4.166 14 C -0.149 4.149 15 C -0.158 4.158 16 C 0.044 3.956 17 H 0.086 0.914 18 C 0.035 3.965 19 N -0.344 5.344 20 C -0.343 4.343 21 H 0.080 0.920 22 C -0.274 4.274 23 N -0.626 5.626 24 Si 0.796 3.204 25 H -0.195 1.195 26 H -0.227 1.227 27 H -0.219 1.219 28 C -0.050 4.050 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.080 0.920 34 H 0.210 0.790 35 H 0.188 0.812 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.119 0.881 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.104 0.896 42 H 0.077 0.923 43 H 0.104 0.896 44 H 0.035 0.965 45 H 0.038 0.962 46 H 0.199 0.801 47 H 0.053 0.947 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.967 -18.176 10.375 22.393 hybrid contribution -0.789 1.693 -1.288 2.269 sum -8.756 -16.482 9.087 20.758 Atomic orbital electron populations 1.22968 0.79001 1.03983 1.01193 1.87919 1.21754 1.27567 1.95682 1.21273 0.87047 0.85381 1.02925 1.20741 0.97116 1.03611 0.93448 1.23352 0.89583 0.91037 0.98490 1.67813 1.08688 1.13505 1.30392 1.23222 1.00977 0.91974 0.86225 1.21118 0.95367 1.06530 0.95502 1.18489 0.82417 0.80959 0.87723 1.91188 1.66673 1.41014 1.37951 1.47833 1.28169 1.36513 1.21616 1.22196 1.02397 0.88680 0.89248 1.21901 0.99826 0.95572 0.99259 1.21496 0.98843 0.99483 0.95076 1.21867 1.02294 0.92427 0.99205 1.21435 0.92494 0.96468 0.85167 0.91387 1.20942 0.97077 0.84219 0.94216 1.42358 1.77565 1.00781 1.13689 1.19521 1.33082 0.87000 0.94741 0.91961 1.25358 1.04617 0.99465 0.97976 1.69825 1.56748 1.18904 1.17111 0.85154 0.76896 0.79973 0.78355 1.19526 1.22745 1.21850 1.21606 0.92530 0.91577 0.99281 0.92166 0.93537 0.88462 0.88983 0.91992 0.78998 0.81170 0.89886 0.89653 0.88083 0.92518 0.90846 0.89627 0.92327 0.89643 0.96456 0.96193 0.80124 0.94696 0.85340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 11.01 113.37 1.25 1.57 16 2 O -0.41 -8.61 10.69 -148.98 -1.59 -10.21 16 3 C 0.11 2.19 6.08 71.23 0.43 2.63 16 4 C -0.15 -3.79 5.52 -19.81 -0.11 -3.90 16 5 C 0.13 3.17 10.85 84.71 0.92 4.09 16 6 N -0.50 -13.94 10.35 -194.75 -2.01 -15.96 16 7 C 0.13 4.03 8.59 85.02 0.73 4.76 16 8 C -0.18 -6.25 5.10 -19.99 -0.10 -6.35 16 9 C 0.52 20.90 6.64 86.78 0.58 21.47 16 10 O -0.50 -25.38 10.69 -3.90 -0.04 -25.42 16 11 N -0.61 -19.69 2.97 -798.38 -2.37 -22.06 16 12 C 0.10 2.19 4.91 86.36 0.42 2.62 16 13 C -0.13 -2.24 6.08 30.67 0.19 -2.06 16 14 C -0.11 -1.94 5.88 30.62 0.18 -1.76 16 15 C -0.12 -2.89 5.37 30.68 0.16 -2.73 16 16 C 0.15 4.95 2.94 44.98 0.13 5.09 16 17 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 18 C 0.16 7.24 4.86 86.38 0.42 7.66 16 19 N -0.70 -39.20 3.19 -343.47 -1.10 -40.30 16 20 C -0.21 -12.94 9.70 84.03 0.81 -12.13 16 21 H 0.06 3.77 7.83 -2.91 -0.02 3.75 16 22 C -0.08 -5.20 5.50 84.86 0.47 -4.73 16 23 N -0.97 -63.97 13.06 21.65 0.28 -63.69 16 24 Si 0.97 50.27 29.55 68.60 2.03 52.29 16 25 H -0.27 -13.35 7.11 99.48 0.71 -12.65 16 26 H -0.30 -15.67 7.11 99.48 0.71 -14.96 16 27 H -0.29 -14.85 7.11 99.48 0.71 -14.14 16 28 C -0.02 -0.76 9.49 22.73 0.22 -0.54 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.09 1.30 8.09 -2.39 -0.02 1.28 16 33 H 0.06 1.24 8.09 -2.39 -0.02 1.22 16 34 H 0.19 3.08 8.06 -2.91 -0.02 3.06 16 35 H 0.17 4.66 6.66 -2.91 -0.02 4.64 16 36 H 0.08 1.64 8.12 -2.38 -0.02 1.62 16 37 H 0.09 1.94 4.82 -2.39 -0.01 1.92 16 38 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 41 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 42 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 45 H 0.02 1.00 6.40 -2.39 -0.02 0.98 16 46 H 0.37 21.84 6.92 -92.71 -0.64 21.20 16 47 H 0.24 15.58 8.31 -92.71 -0.77 14.81 16 48 H 0.13 4.34 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -81.58 381.27 2.21 -79.37 By element: Atomic # 1 Polarization: 29.97 SS G_CDS: 0.32 Total: 30.29 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: 6.70 Total: 15.68 kcal Atomic # 7 Polarization: -136.80 SS G_CDS: -5.20 Total: -142.00 kcal Atomic # 8 Polarization: -34.00 SS G_CDS: -1.63 Total: -35.63 kcal Atomic # 14 Polarization: 50.27 SS G_CDS: 2.03 Total: 52.29 kcal Total: -81.58 2.21 -79.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661925737.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.247 kcal (2) G-P(sol) polarization free energy of solvation -81.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds