Wall clock time and date at job start Tue Mar 31 2020 17:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35685 * 117.00121 * 2 1 4 4 C 1.38898 * 119.62040 * 179.97438 * 3 2 1 5 5 C 1.39573 * 118.94202 * 179.97438 * 4 3 2 6 6 C 1.48164 * 120.88908 * 180.02562 * 5 4 3 7 7 O 1.21506 * 119.99843 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99694 * 179.72765 * 6 5 4 9 9 C 1.46498 * 119.99812 * 180.27559 * 8 6 5 10 10 C 1.53000 * 109.47019 * 179.97438 * 9 8 6 11 11 C 1.53005 * 109.47208 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47184 * 174.94746 * 11 10 9 13 13 H 1.08997 * 109.87327 * 306.25620 * 12 11 10 14 14 C 1.54319 * 109.87818 * 67.43363 * 12 11 10 15 15 C 1.55161 * 102.94301 * 141.60856 * 14 12 11 16 16 C 1.54913 * 101.58065 * 324.49652 * 15 14 12 17 17 N 1.47019 * 109.88014 * 185.23620 * 12 11 10 18 18 C 1.36939 * 125.64739 * 61.61309 * 17 12 11 19 19 H 1.08004 * 120.00121 * 14.67304 * 18 17 12 20 20 C 1.38811 * 120.00161 * 194.67647 * 18 17 12 21 21 N 1.31621 * 119.99975 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00092 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47276 * 60.00019 * 22 20 18 24 24 H 1.48502 * 109.47298 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47195 * 299.99749 * 22 20 18 26 26 C 1.39968 * 118.21705 * 0.27290 * 5 4 3 27 27 C 1.37973 * 119.13544 * 359.45950 * 26 5 4 28 28 N 1.31911 * 120.97600 * 0.55769 * 27 26 5 29 29 H 1.09003 * 109.47304 * 300.00199 * 1 2 3 30 30 H 1.09002 * 109.47407 * 60.00008 * 1 2 3 31 31 H 1.09001 * 109.47197 * 180.02562 * 1 2 3 32 32 H 1.07998 * 120.52970 * 359.95908 * 4 3 2 33 33 H 0.96998 * 119.99826 * 0.27316 * 8 6 5 34 34 H 1.08994 * 109.47265 * 300.00096 * 9 8 6 35 35 H 1.09009 * 109.46872 * 59.99813 * 9 8 6 36 36 H 1.09002 * 109.47337 * 299.99957 * 10 9 8 37 37 H 1.08995 * 109.47098 * 60.00436 * 10 9 8 38 38 H 1.09000 * 109.46657 * 294.95199 * 11 10 9 39 39 H 1.09007 * 109.46613 * 54.94549 * 11 10 9 40 40 H 1.09003 * 110.72010 * 259.96746 * 14 12 11 41 41 H 1.08999 * 110.72714 * 23.24832 * 14 12 11 42 42 H 1.08996 * 111.00811 * 206.41958 * 15 14 12 43 43 H 1.08997 * 111.03767 * 82.58370 * 15 14 12 44 44 H 1.09001 * 110.36429 * 278.17126 * 16 15 14 45 45 H 1.08994 * 110.36779 * 155.84370 * 16 15 14 46 46 H 0.97001 * 120.00242 * 180.02562 * 21 20 18 47 47 H 1.07998 * 120.43259 * 179.72634 * 26 5 4 48 48 H 1.08001 * 119.51384 * 180.26760 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4325 1.2724 0.0005 5 6 4.0514 2.5234 0.0000 6 6 5.5284 2.6414 0.0000 7 8 6.2177 1.6408 0.0009 8 7 6.1071 3.8586 -0.0061 9 6 7.5674 3.9752 -0.0123 10 6 7.9609 5.4537 -0.0191 11 6 9.4861 5.5756 -0.0248 12 6 9.8796 7.0480 -0.1587 13 1 9.3920 7.4841 -1.0305 14 6 9.4716 7.8180 1.1149 15 6 10.6539 8.8017 1.3201 16 6 11.8559 7.9460 0.8479 17 7 11.3391 7.1655 -0.2910 18 6 12.0937 6.6368 -1.3040 19 1 11.6162 6.2884 -2.2079 20 6 13.4724 6.5484 -1.1691 21 7 14.0545 6.9733 -0.0677 22 14 14.5017 5.8266 -2.5507 23 1 14.3129 6.6340 -3.7826 24 1 15.9349 5.8453 -2.1621 25 1 14.0759 4.4270 -2.8060 26 6 3.2394 3.6635 0.0048 27 6 1.8681 3.5115 -0.0015 28 7 1.3179 2.3127 -0.0009 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 4.0231 0.3682 0.0016 33 1 5.5567 4.6573 -0.0065 34 1 7.9741 3.4947 0.8776 35 1 7.9670 3.4891 -0.9024 36 1 7.5544 5.9339 -0.9092 37 1 7.5614 5.9401 0.8707 38 1 9.8860 5.1758 0.9070 39 1 9.8923 5.0130 -0.8655 40 1 8.5407 8.3621 0.9551 41 1 9.3824 7.1400 1.9637 42 1 10.7573 9.0748 2.3702 43 1 10.5374 9.6888 0.6975 44 1 12.1844 7.2804 1.6461 45 1 12.6758 8.5882 0.5268 46 1 15.0180 6.9119 0.0265 47 1 3.6806 4.6493 0.0090 48 1 1.2358 4.3871 -0.0023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663084490.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:15 Heat of formation + Delta-G solvation = -20.600197 kcal Electronic energy + Delta-G solvation = -27414.767636 eV Core-core repulsion = 23470.565184 eV Total energy + Delta-G solvation = -3944.202453 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.23450 -39.76223 -38.13835 -37.82464 -35.67208 -33.41445 -32.77320 -32.12217 -31.13914 -29.39969 -28.22572 -27.72815 -25.41762 -24.53091 -23.77829 -23.51749 -21.59464 -20.96800 -20.14464 -19.23175 -18.90022 -17.70717 -16.95177 -16.65214 -16.46719 -16.15931 -15.86327 -15.74360 -15.07468 -14.70906 -14.54564 -14.49237 -14.30778 -13.96637 -13.78821 -13.68498 -12.91488 -12.63904 -12.36882 -12.17208 -12.04685 -11.92916 -11.74684 -11.65866 -11.48042 -11.03559 -10.82013 -10.76168 -10.58425 -10.53033 -10.36239 -10.11024 -10.03836 -9.98912 -9.76829 -9.61658 -9.61350 -9.25382 -9.01172 -8.55315 -6.75182 -5.72427 -3.07558 0.28235 0.67319 2.48251 2.58344 2.96455 3.41239 3.41463 3.46146 3.46680 3.82210 4.18049 4.47204 4.50784 4.57096 4.61304 4.85152 4.89878 4.97378 5.13835 5.19013 5.22714 5.31450 5.36405 5.45163 5.58292 5.58899 5.60506 5.71720 5.81025 5.84160 5.92354 5.99589 6.08587 6.22879 6.30777 6.34559 6.42177 6.56883 6.70163 6.72739 6.74635 6.95823 7.16787 7.21687 7.31795 7.56445 7.65213 7.82285 7.89497 8.31919 9.22805 9.84455 10.53782 11.39869 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020700 B = 0.001867 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.354504 B =14989.814588 C =15968.344070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.305 6.305 3 C 0.319 3.681 4 C -0.133 4.133 5 C -0.050 4.050 6 C 0.554 3.446 7 O -0.524 6.524 8 N -0.717 5.717 9 C 0.117 3.883 10 C -0.127 4.127 11 C -0.122 4.122 12 C 0.162 3.838 13 H 0.031 0.969 14 C -0.124 4.124 15 C -0.151 4.151 16 C 0.173 3.827 17 N -0.596 5.596 18 C -0.227 4.227 19 H 0.073 0.927 20 C -0.005 4.005 21 N -0.918 5.918 22 Si 0.908 3.092 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.284 1.284 26 C -0.182 4.182 27 C 0.139 3.861 28 N -0.528 5.528 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.155 0.845 33 H 0.400 0.600 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.024 0.976 45 H 0.068 0.932 46 H 0.253 0.747 47 H 0.143 0.857 48 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.082 -5.277 2.484 27.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.212 6.212 3 C 0.140 3.860 4 C -0.154 4.154 5 C -0.060 4.060 6 C 0.339 3.661 7 O -0.401 6.401 8 N -0.369 5.369 9 C -0.006 4.006 10 C -0.166 4.166 11 C -0.163 4.163 12 C 0.055 3.945 13 H 0.048 0.952 14 C -0.162 4.162 15 C -0.189 4.189 16 C 0.048 3.952 17 N -0.320 5.320 18 C -0.356 4.356 19 H 0.091 0.909 20 C -0.202 4.202 21 N -0.565 5.565 22 Si 0.739 3.261 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.211 1.211 26 C -0.203 4.203 27 C -0.017 4.017 28 N -0.253 5.253 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.116 0.884 32 H 0.173 0.827 33 H 0.236 0.764 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.042 0.958 45 H 0.087 0.913 46 H 0.063 0.937 47 H 0.161 0.839 48 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -27.076 -6.382 2.440 27.924 hybrid contribution 0.937 0.147 -0.672 1.162 sum -26.138 -6.235 1.769 26.930 Atomic orbital electron populations 1.22901 0.76875 1.03210 1.02543 1.86272 1.23154 1.24100 1.87632 1.19692 0.88995 0.84887 0.92462 1.21159 0.91935 0.99249 1.03077 1.20187 0.93927 0.93363 0.98560 1.18077 0.86690 0.83946 0.77361 1.90816 1.64126 1.36389 1.48737 1.45997 1.08910 1.07566 1.74388 1.21612 0.77682 0.98344 1.02950 1.21847 0.99027 0.93572 1.02144 1.22040 0.91311 1.00325 1.02589 1.20923 0.86899 0.92035 0.94654 0.95169 1.22590 0.97463 0.98089 0.98070 1.23014 0.98095 0.98239 0.99582 1.21402 0.92488 0.92115 0.89193 1.44533 1.00268 1.61279 1.25938 1.18908 0.88556 1.34203 0.93921 0.90885 1.24899 0.96952 1.01061 0.97278 1.69928 1.09278 1.51415 1.25845 0.86259 0.79437 0.79190 0.81236 1.21183 1.21638 1.21072 1.22181 0.94989 0.99015 1.04127 1.22384 0.92534 0.93673 0.93072 1.67201 1.41275 0.98954 1.17849 0.92164 0.92149 0.88406 0.82695 0.76434 0.91051 0.90962 0.91632 0.91628 0.92185 0.91541 0.92667 0.92045 0.92579 0.92509 0.95838 0.91325 0.93687 0.83885 0.81554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.38 101.05 1.05 1.30 16 2 O -0.31 -2.93 10.47 -18.76 -0.20 -3.13 16 3 C 0.32 3.24 7.49 -17.16 -0.13 3.11 16 4 C -0.13 -1.41 9.61 -38.84 -0.37 -1.78 16 5 C -0.05 -0.49 5.91 -104.68 -0.62 -1.11 16 6 C 0.55 6.75 7.80 -12.18 -0.09 6.65 16 7 O -0.52 -8.49 16.44 5.36 0.09 -8.40 16 8 N -0.72 -7.27 5.51 -61.15 -0.34 -7.61 16 9 C 0.12 1.43 5.67 -4.04 -0.02 1.41 16 10 C -0.13 -1.54 5.10 -26.73 -0.14 -1.68 16 11 C -0.12 -2.09 4.71 -26.73 -0.13 -2.22 16 12 C 0.16 3.14 3.16 -66.96 -0.21 2.93 16 13 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 14 C -0.12 -2.04 5.71 -24.90 -0.14 -2.18 16 15 C -0.15 -2.78 7.09 -24.58 -0.17 -2.95 16 16 C 0.17 4.14 5.41 -2.53 -0.01 4.13 16 17 N -0.60 -14.74 3.13 -162.58 -0.51 -15.25 16 18 C -0.23 -6.19 9.71 -15.06 -0.15 -6.34 16 19 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 20 C -0.01 -0.14 5.47 -17.43 -0.10 -0.24 16 21 N -0.92 -26.81 10.58 55.49 0.59 -26.22 16 22 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 C -0.18 -1.27 9.61 -39.03 -0.38 -1.64 16 27 C 0.14 0.95 11.17 -17.61 -0.20 0.75 16 28 N -0.53 -4.83 9.18 -13.38 -0.12 -4.95 16 29 H 0.06 0.36 8.10 -51.93 -0.42 -0.06 16 30 H 0.06 0.36 8.10 -51.93 -0.42 -0.06 16 31 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.16 1.70 7.74 -52.49 -0.41 1.29 16 33 H 0.40 2.77 6.61 -40.82 -0.27 2.50 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.71 7.64 -51.93 -0.40 0.31 16 38 H 0.06 1.10 8.02 -51.93 -0.42 0.68 16 39 H 0.07 1.27 7.84 -51.93 -0.41 0.86 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.97 7.76 -51.93 -0.40 0.56 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.02 0.61 8.06 -51.93 -0.42 0.19 16 45 H 0.07 1.84 6.93 -51.93 -0.36 1.48 16 46 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 47 H 0.14 0.57 6.53 -52.49 -0.34 0.22 16 48 H 0.17 0.58 8.06 -52.49 -0.42 0.16 16 LS Contribution 392.86 15.07 5.92 5.92 Total: -1.00 -33.53 392.86 -9.01 -42.54 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -7.61 Total: -0.06 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -1.81 Total: 0.13 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -0.38 Total: -54.03 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: -0.11 Total: -11.53 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.53 -9.01 -42.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663084490.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.943 kcal (2) G-P(sol) polarization free energy of solvation -33.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds