Wall clock time and date at job start Tue Mar 31 2020 17:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35685 * 117.00121 * 2 1 4 4 C 1.38898 * 119.62040 * 179.97438 * 3 2 1 5 5 C 1.39573 * 118.94202 * 179.97438 * 4 3 2 6 6 C 1.48164 * 120.88908 * 180.02562 * 5 4 3 7 7 O 1.21506 * 119.99843 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99694 * 179.72765 * 6 5 4 9 9 C 1.46498 * 119.99812 * 180.27559 * 8 6 5 10 10 C 1.53000 * 109.47019 * 179.97438 * 9 8 6 11 11 C 1.53005 * 109.47208 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47184 * 174.94746 * 11 10 9 13 13 H 1.08997 * 109.87327 * 306.25620 * 12 11 10 14 14 C 1.54319 * 109.87818 * 67.43363 * 12 11 10 15 15 C 1.55161 * 102.94301 * 141.60856 * 14 12 11 16 16 C 1.54913 * 101.58065 * 324.49652 * 15 14 12 17 17 N 1.47019 * 109.88014 * 185.23620 * 12 11 10 18 18 C 1.36939 * 125.64739 * 61.61309 * 17 12 11 19 19 H 1.08004 * 120.00121 * 14.67304 * 18 17 12 20 20 C 1.38811 * 120.00161 * 194.67647 * 18 17 12 21 21 N 1.31621 * 119.99975 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00092 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47276 * 60.00019 * 22 20 18 24 24 H 1.48502 * 109.47298 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47195 * 299.99749 * 22 20 18 26 26 C 1.39968 * 118.21705 * 0.27290 * 5 4 3 27 27 C 1.37973 * 119.13544 * 359.45950 * 26 5 4 28 28 N 1.31911 * 120.97600 * 0.55769 * 27 26 5 29 29 H 1.09003 * 109.47304 * 300.00199 * 1 2 3 30 30 H 1.09002 * 109.47407 * 60.00008 * 1 2 3 31 31 H 1.09001 * 109.47197 * 180.02562 * 1 2 3 32 32 H 1.07998 * 120.52970 * 359.95908 * 4 3 2 33 33 H 0.96998 * 119.99826 * 0.27316 * 8 6 5 34 34 H 1.08994 * 109.47265 * 300.00096 * 9 8 6 35 35 H 1.09009 * 109.46872 * 59.99813 * 9 8 6 36 36 H 1.09002 * 109.47337 * 299.99957 * 10 9 8 37 37 H 1.08995 * 109.47098 * 60.00436 * 10 9 8 38 38 H 1.09000 * 109.46657 * 294.95199 * 11 10 9 39 39 H 1.09007 * 109.46613 * 54.94549 * 11 10 9 40 40 H 1.09003 * 110.72010 * 259.96746 * 14 12 11 41 41 H 1.08999 * 110.72714 * 23.24832 * 14 12 11 42 42 H 1.08996 * 111.00811 * 206.41958 * 15 14 12 43 43 H 1.08997 * 111.03767 * 82.58370 * 15 14 12 44 44 H 1.09001 * 110.36429 * 278.17126 * 16 15 14 45 45 H 1.08994 * 110.36779 * 155.84370 * 16 15 14 46 46 H 0.97001 * 120.00242 * 180.02562 * 21 20 18 47 47 H 1.07998 * 120.43259 * 179.72634 * 26 5 4 48 48 H 1.08001 * 119.51384 * 180.26760 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4325 1.2724 0.0005 5 6 4.0514 2.5234 0.0000 6 6 5.5284 2.6414 0.0000 7 8 6.2177 1.6408 0.0009 8 7 6.1071 3.8586 -0.0061 9 6 7.5674 3.9752 -0.0123 10 6 7.9609 5.4537 -0.0191 11 6 9.4861 5.5756 -0.0248 12 6 9.8796 7.0480 -0.1587 13 1 9.3920 7.4841 -1.0305 14 6 9.4716 7.8180 1.1149 15 6 10.6539 8.8017 1.3201 16 6 11.8559 7.9460 0.8479 17 7 11.3391 7.1655 -0.2910 18 6 12.0937 6.6368 -1.3040 19 1 11.6162 6.2884 -2.2079 20 6 13.4724 6.5484 -1.1691 21 7 14.0545 6.9733 -0.0677 22 14 14.5017 5.8266 -2.5507 23 1 14.3129 6.6340 -3.7826 24 1 15.9349 5.8453 -2.1621 25 1 14.0759 4.4270 -2.8060 26 6 3.2394 3.6635 0.0048 27 6 1.8681 3.5115 -0.0015 28 7 1.3179 2.3127 -0.0009 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 4.0231 0.3682 0.0016 33 1 5.5567 4.6573 -0.0065 34 1 7.9741 3.4947 0.8776 35 1 7.9670 3.4891 -0.9024 36 1 7.5544 5.9339 -0.9092 37 1 7.5614 5.9401 0.8707 38 1 9.8860 5.1758 0.9070 39 1 9.8923 5.0130 -0.8655 40 1 8.5407 8.3621 0.9551 41 1 9.3824 7.1400 1.9637 42 1 10.7573 9.0748 2.3702 43 1 10.5374 9.6888 0.6975 44 1 12.1844 7.2804 1.6461 45 1 12.6758 8.5882 0.5268 46 1 15.0180 6.9119 0.0265 47 1 3.6806 4.6493 0.0090 48 1 1.2358 4.3871 -0.0023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663084490.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:14 Heat of formation + Delta-G solvation = -44.497146 kcal Electronic energy + Delta-G solvation = -27415.803886 eV Core-core repulsion = 23470.565184 eV Total energy + Delta-G solvation = -3945.238702 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.93497 -40.65288 -39.45077 -38.76275 -36.79997 -34.75248 -34.09379 -33.34417 -31.80824 -31.21056 -29.56007 -28.28353 -26.74471 -26.17842 -24.66299 -24.40236 -22.71938 -21.86186 -21.84635 -20.74576 -19.72635 -18.68648 -18.39895 -17.55203 -17.12774 -17.05149 -16.89416 -16.74302 -16.61213 -16.07296 -15.72037 -15.55519 -15.20337 -15.15481 -14.81057 -14.46102 -14.26686 -13.89630 -13.68317 -13.55337 -13.22823 -13.11923 -12.97617 -12.73804 -12.67317 -12.64467 -12.23664 -12.21941 -12.03209 -11.81509 -11.69886 -11.54844 -11.42459 -11.28059 -11.11534 -11.11358 -10.75804 -10.62922 -10.21722 -9.62807 -8.75289 -7.84036 -5.19324 -0.44760 0.05719 1.44682 1.47255 1.53090 1.72285 1.75539 2.21132 2.50871 2.72985 3.25639 3.34347 3.45253 3.72233 3.86878 3.91863 3.94125 4.03553 4.08888 4.19654 4.28179 4.37536 4.42122 4.43863 4.45379 4.61626 4.64837 4.68966 4.76179 4.81124 4.85249 4.87808 4.95777 5.01824 5.07038 5.15711 5.22900 5.27208 5.31291 5.38986 5.52343 5.55380 5.70386 5.74390 5.82303 6.14008 6.29624 6.39371 6.69719 7.03761 7.14654 7.84995 8.51918 9.27300 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020700 B = 0.001867 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.354504 B =14989.814588 C =15968.344070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.324 6.324 3 C 0.306 3.694 4 C -0.156 4.156 5 C -0.061 4.061 6 C 0.553 3.447 7 O -0.576 6.576 8 N -0.698 5.698 9 C 0.123 3.877 10 C -0.108 4.108 11 C -0.114 4.114 12 C 0.151 3.849 13 H 0.038 0.962 14 C -0.111 4.111 15 C -0.138 4.138 16 C 0.174 3.826 17 N -0.619 5.619 18 C -0.230 4.230 19 H 0.076 0.924 20 C -0.067 4.067 21 N -0.949 5.949 22 Si 0.970 3.030 23 H -0.276 1.276 24 H -0.296 1.296 25 H -0.280 1.280 26 C -0.165 4.165 27 C 0.143 3.857 28 N -0.535 5.535 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.120 0.880 32 H 0.137 0.863 33 H 0.420 0.580 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.041 0.959 39 H 0.036 0.964 40 H 0.099 0.901 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.064 0.936 44 H -0.010 1.010 45 H 0.028 0.972 46 H 0.245 0.755 47 H 0.182 0.818 48 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.720 -3.301 2.416 30.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.231 6.231 3 C 0.128 3.872 4 C -0.177 4.177 5 C -0.071 4.071 6 C 0.340 3.660 7 O -0.455 6.455 8 N -0.350 5.350 9 C -0.001 4.001 10 C -0.146 4.146 11 C -0.154 4.154 12 C 0.045 3.955 13 H 0.056 0.944 14 C -0.148 4.148 15 C -0.176 4.176 16 C 0.049 3.951 17 N -0.344 5.344 18 C -0.360 4.360 19 H 0.094 0.906 20 C -0.260 4.260 21 N -0.598 5.598 22 Si 0.798 3.202 23 H -0.202 1.202 24 H -0.223 1.223 25 H -0.207 1.207 26 C -0.185 4.185 27 C -0.012 4.012 28 N -0.260 5.260 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.138 0.862 32 H 0.154 0.846 33 H 0.260 0.740 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.118 0.882 41 H 0.089 0.911 42 H 0.098 0.902 43 H 0.082 0.918 44 H 0.008 0.992 45 H 0.046 0.954 46 H 0.054 0.946 47 H 0.199 0.801 48 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -30.787 -4.379 2.364 31.187 hybrid contribution 1.988 -0.424 -0.660 2.137 sum -28.799 -4.803 1.703 29.247 Atomic orbital electron populations 1.23109 0.75280 1.04778 1.02641 1.86245 1.24841 1.24352 1.87689 1.19721 0.88833 0.85470 0.93168 1.21110 0.92438 0.99262 1.04930 1.20052 0.92637 0.94319 1.00137 1.18450 0.87595 0.83654 0.76313 1.90794 1.65431 1.38156 1.51165 1.45730 1.08095 1.07886 1.73305 1.21367 0.78908 0.98365 1.01462 1.21646 0.94978 0.93477 1.04485 1.21837 0.95020 0.98232 1.00331 1.21237 0.83777 0.93728 0.96709 0.94436 1.22593 0.98203 0.97456 0.96570 1.22883 0.95991 0.97843 1.00913 1.21203 0.94037 0.91685 0.88189 1.44854 1.02709 1.61429 1.25379 1.19253 0.89108 1.32815 0.94781 0.90611 1.25668 0.98297 1.02409 0.99602 1.70144 1.08766 1.53212 1.27708 0.85284 0.77419 0.78557 0.78908 1.20222 1.22258 1.20651 1.22563 0.94818 0.99382 1.01724 1.23150 0.93086 0.93998 0.91005 1.67294 1.41413 0.99441 1.17819 0.91980 0.92008 0.86229 0.84552 0.74041 0.92482 0.92933 0.89635 0.88733 0.94037 0.94549 0.88221 0.91054 0.90201 0.91765 0.99200 0.95370 0.94577 0.80113 0.77436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.38 113.37 1.18 1.60 16 2 O -0.32 -6.28 10.47 -90.03 -0.94 -7.22 16 3 C 0.31 6.11 7.49 84.80 0.63 6.75 16 4 C -0.16 -3.38 9.61 22.75 0.22 -3.17 16 5 C -0.06 -1.13 5.91 -19.90 -0.12 -1.25 16 6 C 0.55 13.07 7.80 86.88 0.68 13.75 16 7 O -0.58 -19.34 16.44 -3.73 -0.06 -19.40 16 8 N -0.70 -12.38 5.51 -465.67 -2.57 -14.94 16 9 C 0.12 2.84 5.67 86.38 0.49 3.33 16 10 C -0.11 -2.24 5.10 30.60 0.16 -2.09 16 11 C -0.11 -3.77 4.71 30.60 0.14 -3.63 16 12 C 0.15 5.56 3.16 45.34 0.14 5.71 16 13 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 14 C -0.11 -3.19 5.71 31.78 0.18 -3.01 16 15 C -0.14 -4.76 7.09 31.99 0.23 -4.54 16 16 C 0.17 8.52 5.41 86.86 0.47 8.99 16 17 N -0.62 -30.91 3.13 -668.29 -2.09 -33.00 16 18 C -0.23 -12.79 9.71 84.03 0.82 -11.97 16 19 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 20 C -0.07 -3.84 5.47 84.86 0.46 -3.37 16 21 N -0.95 -57.89 10.58 21.65 0.23 -57.66 16 22 Si 0.97 46.53 29.55 68.60 2.03 48.56 16 23 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 24 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 25 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 26 C -0.16 -1.65 9.61 22.63 0.22 -1.43 16 27 C 0.14 1.39 11.17 84.62 0.94 2.33 16 28 N -0.53 -8.63 9.18 -309.14 -2.84 -11.47 16 29 H 0.06 0.68 8.10 -2.39 -0.02 0.66 16 30 H 0.06 0.68 8.10 -2.39 -0.02 0.66 16 31 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.14 3.34 7.74 -2.91 -0.02 3.31 16 33 H 0.42 3.86 6.61 -92.71 -0.61 3.24 16 34 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.09 1.51 7.64 -2.39 -0.02 1.49 16 38 H 0.04 1.50 8.02 -2.39 -0.02 1.49 16 39 H 0.04 1.40 7.84 -2.38 -0.02 1.38 16 40 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.07 1.95 7.76 -2.39 -0.02 1.93 16 42 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 44 H -0.01 -0.55 8.06 -2.39 -0.02 -0.57 16 45 H 0.03 1.57 6.93 -2.39 -0.02 1.55 16 46 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 47 H 0.18 0.34 6.53 -2.91 -0.02 0.32 16 48 H 0.21 0.24 8.06 -2.91 -0.02 0.22 16 Total: -1.00 -79.50 392.86 0.94 -78.55 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 0.34 Total: 8.57 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 6.84 Total: 8.01 kcal Atomic # 7 Polarization: -109.80 SS G_CDS: -7.27 Total: -117.07 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -1.00 Total: -26.62 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -79.50 0.94 -78.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663084490.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.057 kcal (2) G-P(sol) polarization free energy of solvation -79.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds