Wall clock time and date at job start Tue Mar 31 2020 17:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35676 * 117.00050 * 2 1 4 4 C 1.38916 * 119.68542 * 179.97438 * 3 2 1 5 5 C 1.38381 * 119.11200 * 179.74360 * 4 3 2 6 6 C 1.38828 * 118.48322 * 0.54306 * 5 4 3 7 7 C 1.50703 * 120.35458 * 179.73462 * 6 5 4 8 8 C 1.53002 * 109.46922 * 269.71928 * 7 6 5 9 9 C 1.50703 * 109.46922 * 179.97438 * 8 7 6 10 10 O 1.21282 * 119.99718 * 0.02562 * 9 8 7 11 11 N 1.34769 * 119.99754 * 179.97438 * 9 8 7 12 12 C 1.46503 * 119.99906 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47027 * 185.93850 * 12 11 9 14 14 H 1.08997 * 110.00271 * 298.56119 * 13 12 11 15 15 C 1.54343 * 109.98925 * 177.52084 * 13 12 11 16 16 C 1.55155 * 103.01935 * 218.66430 * 15 13 12 17 17 C 1.54907 * 101.58227 * 35.30935 * 16 15 13 18 18 N 1.47023 * 109.88367 * 59.65951 * 13 12 11 19 19 C 1.36938 * 125.64312 * 298.39564 * 18 13 12 20 20 H 1.08000 * 120.00407 * 334.53487 * 19 18 13 21 21 C 1.38816 * 119.99747 * 154.54856 * 19 18 13 22 22 N 1.31614 * 119.99850 * 335.34863 * 21 19 18 23 23 Si 1.86799 * 119.99872 * 155.35476 * 21 19 18 24 24 H 1.48498 * 109.47109 * 269.99624 * 23 21 19 25 25 H 1.48498 * 109.47255 * 149.99815 * 23 21 19 26 26 H 1.48502 * 109.47497 * 29.99592 * 23 21 19 27 27 C 1.38042 * 119.28979 * 359.45341 * 6 5 4 28 28 N 1.31959 * 120.83673 * 0.28087 * 27 6 5 29 29 H 1.09002 * 109.46938 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47051 * 300.00148 * 1 2 3 31 31 H 1.08999 * 109.47135 * 59.99947 * 1 2 3 32 32 H 1.07998 * 120.44457 * 0.03993 * 4 3 2 33 33 H 1.08004 * 120.76174 * 180.29203 * 5 4 3 34 34 H 1.09001 * 109.46871 * 149.71914 * 7 6 5 35 35 H 1.08997 * 109.46974 * 29.72191 * 7 6 5 36 36 H 1.08991 * 109.46996 * 59.99831 * 8 7 6 37 37 H 1.09004 * 109.46855 * 299.99850 * 8 7 6 38 38 H 0.97000 * 120.00237 * 0.02562 * 11 9 8 39 39 H 1.08997 * 109.47347 * 65.94049 * 12 11 9 40 40 H 1.09001 * 109.47246 * 305.93986 * 12 11 9 41 41 H 1.09005 * 110.84616 * 100.20017 * 15 13 12 42 42 H 1.08991 * 110.66812 * 337.04825 * 15 13 12 43 43 H 1.08992 * 111.00601 * 277.23602 * 16 15 13 44 44 H 1.09001 * 111.00013 * 153.38424 * 16 15 13 45 45 H 1.08996 * 110.37193 * 204.14700 * 17 16 15 46 46 H 1.09002 * 110.37001 * 81.82596 * 17 16 15 47 47 H 0.97001 * 120.00201 * 354.05309 * 22 21 19 48 48 H 1.08006 * 119.58439 * 180.29874 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2740 0.0005 5 6 4.0485 2.5131 -0.0049 6 6 3.2505 3.6491 0.0009 7 6 3.8768 5.0198 0.0014 8 6 4.0882 5.4834 1.4441 9 6 4.7151 6.8539 1.4445 10 8 4.9675 7.4056 0.3943 11 7 4.9944 7.4667 2.6119 12 6 5.6033 8.7992 2.6124 13 6 5.9500 9.2009 4.0474 14 1 5.0439 9.2438 4.6518 15 6 6.6490 10.5770 4.0558 16 6 7.7364 10.4099 5.1499 17 6 8.1458 8.9283 4.9579 18 7 6.8909 8.2300 4.6251 19 6 6.6443 6.8967 4.8166 20 1 5.6296 6.5468 4.9358 21 6 7.6989 5.9949 4.8579 22 7 8.8344 6.2823 4.2577 23 14 7.5061 4.3735 5.7652 24 1 7.9235 4.5452 7.1799 25 1 8.3566 3.3411 5.1201 26 1 6.0851 3.9450 5.7170 27 6 1.8771 3.5097 0.0003 28 7 1.3186 2.3141 -0.0001 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 4.0229 0.3695 0.0003 33 1 5.1254 2.5948 -0.0093 34 1 3.2185 5.7202 -0.5126 35 1 4.8374 4.9805 -0.5122 36 1 4.7464 4.7830 1.9579 37 1 3.1275 5.5227 1.9575 38 1 4.7922 7.0256 3.4518 39 1 4.9012 9.5197 2.1930 40 1 6.5115 8.7839 2.0099 41 1 5.9479 11.3666 4.3263 42 1 7.1048 10.7828 3.0874 43 1 7.3194 10.5743 6.1435 44 1 8.5801 11.0753 4.9670 45 1 8.5691 8.5291 5.8795 46 1 8.8602 8.8351 4.1399 47 1 8.9070 7.0829 3.7149 48 1 1.2517 4.3903 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663508460.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:14 Heat of formation + Delta-G solvation = -49.270801 kcal Electronic energy + Delta-G solvation = -28460.636707 eV Core-core repulsion = 24515.191004 eV Total energy + Delta-G solvation = -3945.445703 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.66958 -40.74936 -39.44599 -38.97910 -35.51997 -35.10782 -34.73374 -33.20623 -31.41143 -30.90103 -30.16932 -28.23583 -26.88985 -25.97326 -24.74570 -24.33411 -22.59005 -22.01233 -21.44178 -20.91399 -19.41016 -19.38885 -18.13781 -17.90394 -17.30005 -16.99034 -16.73015 -16.38686 -16.08496 -15.82186 -15.58813 -15.44817 -15.29371 -14.97988 -14.77797 -14.59555 -14.32904 -14.02997 -13.77840 -13.63733 -13.42761 -13.22089 -12.90594 -12.85235 -12.55476 -12.50667 -12.29822 -12.09777 -12.03803 -12.01786 -11.89580 -11.83778 -11.52022 -11.46693 -10.92342 -10.75914 -10.62349 -10.49043 -9.86509 -9.37788 -8.92684 -8.18304 -5.33087 0.13055 0.24831 1.59618 1.65484 1.75080 1.81354 2.14282 2.42487 2.66148 2.75914 3.30735 3.34570 3.52317 3.70309 3.87390 3.91265 3.98645 4.00786 4.04305 4.17402 4.21279 4.30435 4.32523 4.41141 4.43307 4.45765 4.46955 4.63008 4.69737 4.70337 4.75872 4.77699 4.86351 4.93442 4.97257 4.98866 5.10848 5.14597 5.16135 5.35366 5.38465 5.46014 5.46850 5.64510 5.76389 6.22511 6.38506 6.73116 6.81055 6.96419 7.37549 7.75567 8.39683 9.08854 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013928 B = 0.002805 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.807393 B = 9979.597046 C =11339.614693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.322 6.322 3 C 0.295 3.705 4 C -0.192 4.192 5 C -0.040 4.040 6 C -0.166 4.166 7 C -0.042 4.042 8 C -0.127 4.127 9 C 0.503 3.497 10 O -0.598 6.598 11 N -0.703 5.703 12 C 0.123 3.877 13 C 0.139 3.861 14 H 0.053 0.947 15 C -0.114 4.114 16 C -0.121 4.121 17 C 0.141 3.859 18 N -0.610 5.610 19 C -0.318 4.318 20 H 0.069 0.931 21 C -0.074 4.074 22 N -0.949 5.949 23 Si 1.106 2.894 24 H -0.292 1.292 25 H -0.303 1.303 26 H -0.261 1.261 27 C 0.139 3.861 28 N -0.551 5.551 29 H 0.122 0.878 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.156 0.844 33 H 0.154 0.846 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.093 0.907 37 H 0.116 0.884 38 H 0.409 0.591 39 H 0.067 0.933 40 H 0.024 0.976 41 H 0.102 0.898 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.017 0.983 46 H -0.003 1.003 47 H 0.254 0.746 48 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.035 -3.833 -5.106 16.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.229 6.229 3 C 0.117 3.883 4 C -0.212 4.212 5 C -0.066 4.066 6 C -0.169 4.169 7 C -0.081 4.081 8 C -0.167 4.167 9 C 0.291 3.709 10 O -0.480 6.480 11 N -0.355 5.355 12 C -0.004 4.004 13 C 0.033 3.967 14 H 0.071 0.929 15 C -0.152 4.152 16 C -0.159 4.159 17 C 0.015 3.985 18 N -0.336 5.336 19 C -0.447 4.447 20 H 0.086 0.914 21 C -0.271 4.271 22 N -0.591 5.591 23 Si 0.932 3.068 24 H -0.219 1.219 25 H -0.230 1.230 26 H -0.185 1.185 27 C -0.016 4.016 28 N -0.275 5.275 29 H 0.140 0.860 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.173 0.827 33 H 0.171 0.829 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.134 0.866 38 H 0.248 0.752 39 H 0.085 0.915 40 H 0.042 0.958 41 H 0.120 0.880 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.103 0.897 45 H 0.036 0.964 46 H 0.015 0.985 47 H 0.064 0.936 48 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -14.939 -5.274 -5.307 16.708 hybrid contribution 0.464 1.200 -0.257 1.312 sum -14.475 -4.074 -5.564 16.034 Atomic orbital electron populations 1.23037 0.75950 1.04563 1.02180 1.86216 1.24318 1.24466 1.87948 1.20112 0.90020 0.84991 0.93169 1.21283 0.91920 1.00242 1.07761 1.21639 1.01556 0.90724 0.92659 1.20720 0.94913 0.96077 1.05173 1.20025 1.01356 0.91783 0.94913 1.21643 1.03095 0.92261 0.99667 1.21215 0.78058 0.88467 0.83175 1.90611 1.56412 1.68368 1.32632 1.46161 1.60981 1.19172 1.09154 1.21758 0.95843 0.83989 0.98781 1.21528 0.93999 0.90620 0.90592 0.92895 1.22523 0.98190 0.95379 0.99139 1.22701 0.99056 0.94814 0.99336 1.21469 0.89037 0.92255 0.95704 1.44894 1.13051 1.04825 1.70796 1.19782 0.94767 0.82709 1.47470 0.91394 1.26928 0.94376 1.05184 1.00650 1.70841 1.29779 1.27686 1.30823 0.82964 0.76295 0.72431 0.75125 1.21900 1.22974 1.18536 1.22650 0.92473 0.93907 0.92614 1.67343 1.41224 0.99123 1.19797 0.86028 0.92653 0.92513 0.82678 0.82861 0.89644 0.91407 0.88904 0.86623 0.75218 0.91466 0.95764 0.87970 0.91505 0.90575 0.89655 0.96436 0.98533 0.93565 0.80299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 10.38 113.37 1.18 1.77 16 2 O -0.32 -7.20 10.48 -89.94 -0.94 -8.14 16 3 C 0.30 7.14 7.49 84.79 0.63 7.77 16 4 C -0.19 -4.22 10.04 22.47 0.23 -3.99 16 5 C -0.04 -0.89 9.85 22.45 0.22 -0.66 16 6 C -0.17 -3.69 5.15 -19.77 -0.10 -3.79 16 7 C -0.04 -1.03 4.66 29.85 0.14 -0.89 16 8 C -0.13 -3.41 5.68 29.85 0.17 -3.24 16 9 C 0.50 18.13 7.83 87.66 0.69 18.82 16 10 O -0.60 -25.31 15.97 -3.04 -0.05 -25.35 16 11 N -0.70 -26.07 4.81 -463.06 -2.23 -28.30 16 12 C 0.12 4.62 5.22 86.38 0.45 5.07 16 13 C 0.14 5.06 3.37 45.35 0.15 5.21 16 14 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 15 C -0.11 -3.36 6.48 31.79 0.21 -3.15 16 16 C -0.12 -3.85 7.09 31.98 0.23 -3.62 16 17 C 0.14 6.30 5.51 86.85 0.48 6.78 16 18 N -0.61 -27.89 2.94 -668.24 -1.96 -29.86 16 19 C -0.32 -15.81 8.16 84.03 0.69 -15.13 16 20 H 0.07 3.19 6.47 -2.91 -0.02 3.17 16 21 C -0.07 -3.99 5.18 84.86 0.44 -3.55 16 22 N -0.95 -56.64 13.06 21.65 0.28 -56.36 16 23 Si 1.11 48.39 29.98 68.60 2.06 50.45 16 24 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 25 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 26 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 27 C 0.14 2.97 10.85 84.63 0.92 3.88 16 28 N -0.55 -13.23 9.22 -308.95 -2.85 -16.07 16 29 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.05 0.90 8.10 -2.38 -0.02 0.88 16 31 H 0.06 0.90 8.10 -2.39 -0.02 0.88 16 32 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 33 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 34 H 0.08 2.00 8.05 -2.39 -0.02 1.98 16 35 H 0.07 1.85 8.05 -2.39 -0.02 1.83 16 36 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.41 14.93 5.75 -92.71 -0.53 14.39 16 39 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.02 1.08 8.11 -2.39 -0.02 1.06 16 41 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 42 H 0.07 1.97 7.84 -2.39 -0.02 1.95 16 43 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.00 -0.16 6.69 -2.39 -0.02 -0.17 16 47 H 0.25 15.65 6.09 -92.71 -0.56 15.09 16 48 H 0.18 2.91 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -70.70 391.40 1.65 -69.05 By element: Atomic # 1 Polarization: 32.69 SS G_CDS: 0.63 Total: 33.32 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: 6.71 Total: 11.27 kcal Atomic # 7 Polarization: -123.84 SS G_CDS: -6.75 Total: -130.59 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -0.99 Total: -33.49 kcal Atomic # 14 Polarization: 48.39 SS G_CDS: 2.06 Total: 50.45 kcal Total: -70.70 1.65 -69.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663508460.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.776 kcal (2) G-P(sol) polarization free energy of solvation -70.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds