Wall clock time and date at job start Tue Mar 31 2020 17:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42892 * 114.00152 * 2 1 4 4 C 1.50704 * 109.47485 * 180.02562 * 3 2 1 5 5 C 1.38356 * 120.34579 * 90.00139 * 4 3 2 6 6 N 1.31930 * 121.07882 * 180.02562 * 5 4 3 7 7 C 1.31699 * 121.87719 * 359.97223 * 6 5 4 8 8 C 1.39524 * 120.56822 * 0.26409 * 7 6 5 9 9 C 1.47832 * 120.55696 * 179.74377 * 8 7 6 10 10 O 1.21558 * 119.99909 * 180.02562 * 9 8 7 11 11 N 1.34777 * 120.00173 * 359.97438 * 9 8 7 12 12 C 1.46504 * 119.99893 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47128 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.47355 * 180.02562 * 13 12 11 15 15 H 1.09001 * 110.88764 * 302.57078 * 14 13 12 16 16 C 1.55161 * 111.00714 * 178.64953 * 14 13 12 17 17 C 1.54317 * 102.94382 * 206.42261 * 16 14 13 18 18 N 1.47028 * 107.27211 * 22.19059 * 17 16 14 19 19 C 1.36934 * 125.64754 * 181.02505 * 18 17 16 20 20 H 1.08004 * 119.99576 * 180.02562 * 19 18 17 21 21 C 1.38811 * 120.00347 * 0.04136 * 19 18 17 22 22 N 1.31625 * 119.99636 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00177 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47203 * 89.99958 * 23 21 19 25 25 H 1.48497 * 109.47208 * 209.99780 * 23 21 19 26 26 H 1.48505 * 109.47067 * 329.99996 * 23 21 19 27 27 C 1.47424 * 108.70163 * 1.06116 * 18 17 16 28 28 C 1.38353 * 120.34975 * 270.02698 * 4 3 2 29 29 H 1.08997 * 109.46944 * 299.99620 * 1 2 3 30 30 H 1.09004 * 109.47533 * 59.99974 * 1 2 3 31 31 H 1.09005 * 109.47260 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47251 * 60.00555 * 3 2 1 33 33 H 1.09003 * 109.47307 * 300.00346 * 3 2 1 34 34 H 1.08001 * 119.46193 * 0.02562 * 5 4 3 35 35 H 1.08002 * 119.71152 * 179.97438 * 7 6 5 36 36 H 0.96996 * 120.00147 * 0.02562 * 11 9 8 37 37 H 1.09009 * 109.47251 * 299.99829 * 12 11 9 38 38 H 1.08996 * 109.47263 * 60.00456 * 12 11 9 39 39 H 1.09000 * 109.46805 * 300.00154 * 13 12 11 40 40 H 1.09002 * 109.46943 * 59.99466 * 13 12 11 41 41 H 1.09003 * 110.71724 * 324.78799 * 16 14 13 42 42 H 1.09002 * 110.71924 * 88.05707 * 16 14 13 43 43 H 1.09000 * 109.88343 * 262.77495 * 17 16 14 44 44 H 1.08998 * 110.01106 * 141.67763 * 17 16 14 45 45 H 0.96998 * 119.99211 * 180.02562 * 22 21 19 46 46 H 1.09006 * 110.36690 * 217.03385 * 27 18 17 47 47 H 1.08997 * 110.46156 * 94.75704 * 27 18 17 48 48 H 1.07997 * 120.85391 * 359.97438 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.2089 1.1315 -1.1949 6 7 5.5239 1.0269 -1.2124 7 6 6.2319 0.9707 -0.1033 8 6 5.6044 1.0151 1.1421 9 6 6.3989 0.9463 2.3869 10 8 5.8417 0.9855 3.4665 11 7 7.7410 0.8392 2.3247 12 6 8.5283 0.7704 3.5583 13 6 10.0134 0.6538 3.2096 14 6 10.8356 0.5813 4.4979 15 1 10.6524 1.4536 5.1254 16 6 12.3476 0.4281 4.1849 17 6 12.8893 -0.2892 5.4393 18 7 11.7529 -0.9688 6.0785 19 6 11.8088 -1.7030 7.2329 20 1 10.9139 -2.1652 7.6228 21 6 13.0155 -1.8530 7.9024 22 7 14.1062 -1.2899 7.4271 23 14 13.0919 -2.8553 9.4769 24 1 13.3832 -4.2736 9.1472 25 1 14.1652 -2.3203 10.3526 26 1 11.7881 -2.7688 10.1824 27 6 10.5435 -0.7294 5.2701 28 6 4.2099 1.1305 1.1930 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6887 1.8463 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.6671 1.1750 -2.1282 35 1 7.3071 0.8847 -0.1584 36 1 8.1856 0.8076 1.4632 37 1 8.3632 1.6738 4.1455 38 1 8.2212 -0.1005 4.1372 39 1 10.1789 -0.2494 2.6222 40 1 10.3202 1.5249 2.6308 41 1 12.4972 -0.1843 3.2956 42 1 12.8176 1.4043 4.0657 43 1 13.3195 0.4395 6.1263 44 1 13.6454 -1.0204 5.1535 45 1 14.9495 -1.3951 7.8947 46 1 9.6743 -0.6036 5.9158 47 1 10.3818 -1.5521 4.5735 48 1 3.6916 1.1713 2.1396 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664721803.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:27 Heat of formation + Delta-G solvation = -25.593353 kcal Electronic energy + Delta-G solvation = -27198.265424 eV Core-core repulsion = 23253.846451 eV Total energy + Delta-G solvation = -3944.418972 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.07545 -39.42732 -38.21640 -37.78559 -35.37125 -33.52961 -33.17162 -32.40414 -30.72003 -28.99281 -28.00427 -26.77378 -26.05972 -25.15541 -24.15432 -23.12347 -22.27158 -20.81208 -19.97344 -19.47913 -18.18303 -17.44563 -17.03788 -16.94662 -16.81110 -16.01487 -15.82019 -15.75204 -15.45244 -15.01895 -14.56533 -14.26334 -14.14766 -13.63265 -13.60371 -13.57859 -13.43430 -12.95637 -12.47275 -12.42067 -12.27321 -11.98853 -11.95017 -11.81730 -11.55520 -11.09512 -10.85612 -10.74443 -10.55591 -10.32172 -10.27809 -10.11828 -9.97861 -9.91518 -9.79330 -9.72293 -9.64461 -9.58903 -9.18604 -8.55771 -6.77910 -5.67002 -2.99948 0.18775 0.65941 2.52949 2.86959 3.20285 3.43068 3.48055 3.50036 3.58853 3.82659 4.19995 4.26693 4.37393 4.44041 4.53852 4.57603 4.72669 4.84876 4.86510 4.89433 5.02240 5.09058 5.11366 5.19777 5.27772 5.50931 5.54344 5.61533 5.65004 5.66777 5.75744 5.87490 6.00716 6.03736 6.10219 6.20852 6.31141 6.40642 6.55252 6.57654 6.61816 6.75954 6.99772 7.24611 7.35447 7.61089 7.67525 7.87263 7.95391 8.31134 9.27151 9.87647 10.54012 11.44813 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021679 B = 0.001762 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.284013 B =15885.822450 C =16844.617108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.107 3.893 4 C -0.152 4.152 5 C 0.142 3.858 6 N -0.486 5.486 7 C 0.140 3.860 8 C -0.185 4.185 9 C 0.560 3.440 10 O -0.531 6.531 11 N -0.721 5.721 12 C 0.117 3.883 13 C -0.117 4.117 14 C -0.100 4.100 15 H 0.076 0.924 16 C -0.138 4.138 17 C 0.176 3.824 18 N -0.607 5.607 19 C -0.226 4.226 20 H 0.077 0.923 21 C -0.010 4.010 22 N -0.923 5.923 23 Si 0.911 3.089 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.139 3.861 28 C 0.004 3.996 29 H 0.044 0.956 30 H 0.043 0.957 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.162 0.838 35 H 0.162 0.838 36 H 0.399 0.601 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.045 0.955 44 H 0.041 0.959 45 H 0.251 0.749 46 H 0.037 0.963 47 H 0.017 0.983 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.796 8.556 -20.601 31.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.030 3.970 4 C -0.155 4.155 5 C -0.015 4.015 6 N -0.194 5.194 7 C -0.018 4.018 8 C -0.190 4.190 9 C 0.346 3.654 10 O -0.408 6.408 11 N -0.373 5.373 12 C -0.006 4.006 13 C -0.155 4.155 14 C -0.120 4.120 15 H 0.094 0.906 16 C -0.176 4.176 17 C 0.052 3.948 18 N -0.333 5.333 19 C -0.355 4.355 20 H 0.095 0.905 21 C -0.206 4.206 22 N -0.571 5.571 23 Si 0.742 3.258 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.013 3.987 28 C -0.022 4.022 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.179 0.821 35 H 0.179 0.821 36 H 0.234 0.766 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.055 0.945 47 H 0.035 0.965 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -22.458 8.316 -20.428 31.477 hybrid contribution -0.242 -0.327 1.226 1.291 sum -22.700 7.990 -19.202 30.787 Atomic orbital electron populations 1.22795 0.80426 1.03203 1.00195 1.87982 1.20067 1.26964 1.95456 1.21231 0.88468 0.85571 1.01714 1.20579 0.95989 1.04703 0.94184 1.22919 0.89918 0.91068 0.97612 1.67773 1.07875 1.12904 1.30830 1.23068 1.00398 0.91540 0.86798 1.21056 0.95177 1.07768 0.95026 1.17977 0.82243 0.76944 0.88264 1.90813 1.70918 1.49569 1.29533 1.45991 1.06177 1.74426 1.10680 1.21575 0.90457 1.03045 0.85485 1.21756 0.92562 1.02286 0.98906 1.22270 0.95303 0.99717 0.94760 0.90557 1.22899 0.94524 1.00048 1.00166 1.21139 0.89578 0.94755 0.89373 1.44486 1.03219 1.59958 1.25634 1.19080 0.94631 1.23694 0.98074 0.90484 1.24803 0.95642 1.00859 0.99329 1.69975 0.98853 1.48142 1.40129 0.86119 0.77149 0.79630 0.82891 1.21664 1.21705 1.20698 1.21611 0.91038 0.92983 0.93059 1.21657 0.92490 0.89066 0.99015 0.93750 0.93824 0.89291 0.91738 0.91665 0.82098 0.82110 0.76634 0.91099 0.90553 0.91190 0.91549 0.92550 0.92334 0.93717 0.94069 0.93848 0.94455 0.96514 0.83289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.39 -3.06 10.69 -35.23 -0.38 -3.44 16 3 C 0.11 0.64 6.08 36.01 0.22 0.86 16 4 C -0.15 -1.20 5.52 -104.53 -0.58 -1.78 16 5 C 0.14 1.09 10.85 -17.47 -0.19 0.90 16 6 N -0.49 -4.46 10.35 -12.91 -0.13 -4.59 16 7 C 0.14 1.19 10.71 -17.13 -0.18 1.01 16 8 C -0.19 -1.85 5.89 -104.82 -0.62 -2.47 16 9 C 0.56 6.83 7.78 -12.34 -0.10 6.73 16 10 O -0.53 -8.52 16.42 5.31 0.09 -8.44 16 11 N -0.72 -7.41 5.51 -61.25 -0.34 -7.75 16 12 C 0.12 1.44 5.52 -4.04 -0.02 1.41 16 13 C -0.12 -1.40 4.84 -26.73 -0.13 -1.53 16 14 C -0.10 -1.66 3.07 -88.47 -0.27 -1.93 16 15 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 16 C -0.14 -2.49 6.42 -24.90 -0.16 -2.65 16 17 C 0.18 4.31 5.38 -3.06 -0.02 4.29 16 18 N -0.61 -15.76 3.39 -170.07 -0.58 -16.34 16 19 C -0.23 -6.46 10.28 -15.06 -0.15 -6.62 16 20 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 21 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 22 N -0.92 -27.55 10.31 55.49 0.57 -26.98 16 23 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 C 0.14 2.87 5.89 -2.53 -0.01 2.85 16 28 C 0.00 0.04 9.39 -38.87 -0.37 -0.33 16 29 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.04 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.32 8.09 -51.93 -0.42 -0.10 16 33 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 34 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.16 0.92 6.42 -52.49 -0.34 0.58 16 36 H 0.40 2.85 6.54 -40.82 -0.27 2.59 16 37 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 38 H 0.08 1.08 7.46 -51.93 -0.39 0.69 16 39 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.94 8.04 -51.93 -0.42 0.53 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.04 1.21 7.38 -51.93 -0.38 0.83 16 44 H 0.04 1.12 7.50 -51.93 -0.39 0.73 16 45 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 46 H 0.04 0.77 8.07 -51.93 -0.42 0.35 16 47 H 0.02 0.35 8.00 -51.93 -0.42 -0.07 16 48 H 0.15 1.41 7.74 -52.49 -0.41 1.00 16 LS Contribution 394.30 15.07 5.94 5.94 Total: -1.00 -35.44 394.30 -9.02 -44.46 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -7.61 Total: -2.03 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -1.56 Total: 1.64 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: -0.48 Total: -55.66 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -0.29 Total: -11.88 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.44 -9.02 -44.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664721803.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.868 kcal (2) G-P(sol) polarization free energy of solvation -35.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds