Wall clock time and date at job start Tue Mar 31 2020 17:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42892 * 114.00152 * 2 1 4 4 C 1.50704 * 109.47485 * 180.02562 * 3 2 1 5 5 C 1.38356 * 120.34579 * 90.00139 * 4 3 2 6 6 N 1.31930 * 121.07882 * 180.02562 * 5 4 3 7 7 C 1.31699 * 121.87719 * 359.97223 * 6 5 4 8 8 C 1.39524 * 120.56822 * 0.26409 * 7 6 5 9 9 C 1.47832 * 120.55696 * 179.74377 * 8 7 6 10 10 O 1.21558 * 119.99909 * 180.02562 * 9 8 7 11 11 N 1.34777 * 120.00173 * 359.97438 * 9 8 7 12 12 C 1.46504 * 119.99893 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47128 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.47355 * 180.02562 * 13 12 11 15 15 H 1.09001 * 110.88764 * 302.57078 * 14 13 12 16 16 C 1.55161 * 111.00714 * 178.64953 * 14 13 12 17 17 C 1.54317 * 102.94382 * 206.42261 * 16 14 13 18 18 N 1.47028 * 107.27211 * 22.19059 * 17 16 14 19 19 C 1.36934 * 125.64754 * 181.02505 * 18 17 16 20 20 H 1.08004 * 119.99576 * 180.02562 * 19 18 17 21 21 C 1.38811 * 120.00347 * 0.04136 * 19 18 17 22 22 N 1.31625 * 119.99636 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00177 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47203 * 89.99958 * 23 21 19 25 25 H 1.48497 * 109.47208 * 209.99780 * 23 21 19 26 26 H 1.48505 * 109.47067 * 329.99996 * 23 21 19 27 27 C 1.47424 * 108.70163 * 1.06116 * 18 17 16 28 28 C 1.38353 * 120.34975 * 270.02698 * 4 3 2 29 29 H 1.08997 * 109.46944 * 299.99620 * 1 2 3 30 30 H 1.09004 * 109.47533 * 59.99974 * 1 2 3 31 31 H 1.09005 * 109.47260 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47251 * 60.00555 * 3 2 1 33 33 H 1.09003 * 109.47307 * 300.00346 * 3 2 1 34 34 H 1.08001 * 119.46193 * 0.02562 * 5 4 3 35 35 H 1.08002 * 119.71152 * 179.97438 * 7 6 5 36 36 H 0.96996 * 120.00147 * 0.02562 * 11 9 8 37 37 H 1.09009 * 109.47251 * 299.99829 * 12 11 9 38 38 H 1.08996 * 109.47263 * 60.00456 * 12 11 9 39 39 H 1.09000 * 109.46805 * 300.00154 * 13 12 11 40 40 H 1.09002 * 109.46943 * 59.99466 * 13 12 11 41 41 H 1.09003 * 110.71724 * 324.78799 * 16 14 13 42 42 H 1.09002 * 110.71924 * 88.05707 * 16 14 13 43 43 H 1.09000 * 109.88343 * 262.77495 * 17 16 14 44 44 H 1.08998 * 110.01106 * 141.67763 * 17 16 14 45 45 H 0.96998 * 119.99211 * 180.02562 * 22 21 19 46 46 H 1.09006 * 110.36690 * 217.03385 * 27 18 17 47 47 H 1.08997 * 110.46156 * 94.75704 * 27 18 17 48 48 H 1.07997 * 120.85391 * 359.97438 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.2089 1.1315 -1.1949 6 7 5.5239 1.0269 -1.2124 7 6 6.2319 0.9707 -0.1033 8 6 5.6044 1.0151 1.1421 9 6 6.3989 0.9463 2.3869 10 8 5.8417 0.9855 3.4665 11 7 7.7410 0.8392 2.3247 12 6 8.5283 0.7704 3.5583 13 6 10.0134 0.6538 3.2096 14 6 10.8356 0.5813 4.4979 15 1 10.6524 1.4536 5.1254 16 6 12.3476 0.4281 4.1849 17 6 12.8893 -0.2892 5.4393 18 7 11.7529 -0.9688 6.0785 19 6 11.8088 -1.7030 7.2329 20 1 10.9139 -2.1652 7.6228 21 6 13.0155 -1.8530 7.9024 22 7 14.1062 -1.2899 7.4271 23 14 13.0919 -2.8553 9.4769 24 1 13.3832 -4.2736 9.1472 25 1 14.1652 -2.3203 10.3526 26 1 11.7881 -2.7688 10.1824 27 6 10.5435 -0.7294 5.2701 28 6 4.2099 1.1305 1.1930 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6887 1.8463 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.6671 1.1750 -2.1282 35 1 7.3071 0.8847 -0.1584 36 1 8.1856 0.8076 1.4632 37 1 8.3632 1.6738 4.1455 38 1 8.2212 -0.1005 4.1372 39 1 10.1789 -0.2494 2.6222 40 1 10.3202 1.5249 2.6308 41 1 12.4972 -0.1843 3.2956 42 1 12.8176 1.4043 4.0657 43 1 13.3195 0.4395 6.1263 44 1 13.6454 -1.0204 5.1535 45 1 14.9495 -1.3951 7.8947 46 1 9.6743 -0.6036 5.9158 47 1 10.3818 -1.5521 4.5735 48 1 3.6916 1.1713 2.1396 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664721803.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:26 Heat of formation + Delta-G solvation = -50.554357 kcal Electronic energy + Delta-G solvation = -27199.347814 eV Core-core repulsion = 23253.846451 eV Total energy + Delta-G solvation = -3945.501362 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.78969 -40.30988 -39.36456 -38.69229 -36.56000 -34.84412 -34.07045 -33.40086 -32.22386 -30.67270 -28.52500 -28.17601 -26.74221 -26.50420 -25.32819 -23.77906 -23.47382 -21.86498 -21.69563 -20.79626 -18.95337 -18.86979 -18.08161 -17.67153 -17.39423 -17.00027 -16.74762 -16.61351 -16.40432 -16.23881 -16.08191 -15.57313 -15.23198 -14.99870 -14.60170 -14.23597 -14.10663 -13.96241 -13.83255 -13.66724 -13.35496 -13.31431 -13.08100 -12.91165 -12.78426 -12.67704 -12.37859 -12.22609 -12.01741 -11.79610 -11.66612 -11.38994 -11.31340 -11.25870 -11.01071 -10.73660 -10.70459 -10.51147 -10.34911 -10.07191 -8.88156 -7.85445 -5.20374 -0.48206 0.00829 1.43775 1.45854 1.54676 1.71143 1.99820 2.48977 2.58911 3.05168 3.25591 3.32189 3.58690 3.67551 3.70480 3.75131 3.80185 3.84311 4.00193 4.01116 4.16810 4.27231 4.36277 4.38493 4.49460 4.53514 4.56212 4.61940 4.63624 4.71497 4.77302 4.88917 4.89928 4.91870 5.00546 5.06408 5.14396 5.17517 5.27347 5.34838 5.43788 5.45003 5.54488 5.72327 5.80704 6.16314 6.21511 6.42483 6.73047 7.08954 7.11488 7.79685 8.43696 9.24765 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021679 B = 0.001762 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.284013 B =15885.822450 C =16844.617108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.105 3.895 4 C -0.153 4.153 5 C 0.145 3.855 6 N -0.502 5.502 7 C 0.146 3.854 8 C -0.200 4.200 9 C 0.560 3.440 10 O -0.579 6.579 11 N -0.705 5.705 12 C 0.122 3.878 13 C -0.100 4.100 14 C -0.085 4.085 15 H 0.073 0.927 16 C -0.122 4.122 17 C 0.180 3.820 18 N -0.631 5.631 19 C -0.244 4.244 20 H 0.078 0.922 21 C -0.068 4.068 22 N -0.951 5.951 23 Si 0.978 3.022 24 H -0.285 1.285 25 H -0.292 1.292 26 H -0.271 1.271 27 C 0.132 3.868 28 C -0.009 4.009 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.190 0.810 35 H 0.188 0.812 36 H 0.417 0.583 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.082 0.918 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.007 0.993 44 H 0.004 0.996 45 H 0.246 0.754 46 H 0.032 0.968 47 H 0.024 0.976 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.098 9.219 -23.158 34.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C 0.029 3.971 4 C -0.155 4.155 5 C -0.012 4.012 6 N -0.210 5.210 7 C -0.012 4.012 8 C -0.205 4.205 9 C 0.347 3.653 10 O -0.460 6.460 11 N -0.358 5.358 12 C -0.001 4.001 13 C -0.138 4.138 14 C -0.105 4.105 15 H 0.091 0.909 16 C -0.160 4.160 17 C 0.055 3.945 18 N -0.358 5.358 19 C -0.373 4.373 20 H 0.096 0.904 21 C -0.261 4.261 22 N -0.600 5.600 23 Si 0.806 3.194 24 H -0.212 1.212 25 H -0.219 1.219 26 H -0.196 1.196 27 C 0.008 3.992 28 C -0.036 4.036 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.110 0.890 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.207 0.793 35 H 0.205 0.795 36 H 0.255 0.745 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.101 0.899 40 H 0.119 0.881 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.025 0.975 44 H 0.022 0.978 45 H 0.056 0.944 46 H 0.050 0.950 47 H 0.042 0.958 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -23.777 8.985 -23.041 34.307 hybrid contribution 0.081 -0.548 1.986 2.062 sum -23.696 8.436 -21.054 32.802 Atomic orbital electron populations 1.22949 0.78982 1.03823 1.01327 1.87927 1.21771 1.28093 1.95715 1.21358 0.87175 0.85255 1.03326 1.20777 0.97124 1.04009 0.93564 1.23419 0.89719 0.89424 0.98616 1.67867 1.08616 1.13606 1.30875 1.23420 1.01606 0.90282 0.85891 1.20917 0.95192 1.09776 0.94595 1.18322 0.82676 0.75933 0.88362 1.90788 1.71868 1.51968 1.31383 1.45776 1.05572 1.73435 1.10973 1.21366 0.91001 1.01725 0.86053 1.21609 0.91037 1.04549 0.96613 1.22152 0.94931 0.97047 0.96386 0.90859 1.22761 0.95130 1.00722 0.97362 1.20959 0.88976 0.93265 0.91339 1.44842 1.05503 1.59735 1.25670 1.19466 0.94773 1.23835 0.99260 0.90408 1.25661 0.95413 1.02385 1.02669 1.70203 0.99055 1.49446 1.41289 0.85083 0.77288 0.77977 0.79029 1.21223 1.21856 1.19559 1.21837 0.88961 0.95502 0.92945 1.21758 0.92725 0.89579 0.99500 0.93184 0.92102 0.89035 0.91191 0.88990 0.79321 0.79487 0.74478 0.91843 0.92873 0.89901 0.88117 0.90463 0.89869 0.97496 0.97821 0.94443 0.95012 0.95788 0.84260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 11.01 113.37 1.25 1.45 16 2 O -0.41 -6.06 10.69 -148.98 -1.59 -7.65 16 3 C 0.11 1.08 6.08 71.24 0.43 1.52 16 4 C -0.15 -2.18 5.52 -19.81 -0.11 -2.29 16 5 C 0.14 1.88 10.85 84.71 0.92 2.80 16 6 N -0.50 -7.96 10.35 -194.74 -2.01 -9.98 16 7 C 0.15 2.15 10.71 85.02 0.91 3.07 16 8 C -0.20 -3.80 5.89 -19.99 -0.12 -3.91 16 9 C 0.56 13.33 7.78 86.78 0.68 14.00 16 10 O -0.58 -19.04 16.42 -3.90 -0.06 -19.10 16 11 N -0.71 -13.06 5.51 -465.97 -2.57 -15.62 16 12 C 0.12 2.79 5.52 86.38 0.48 3.27 16 13 C -0.10 -2.04 4.84 30.59 0.15 -1.90 16 14 C -0.09 -2.64 3.07 -9.40 -0.03 -2.67 16 15 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 16 C -0.12 -4.15 6.42 31.78 0.20 -3.95 16 17 C 0.18 8.99 5.38 86.73 0.47 9.46 16 18 N -0.63 -33.47 3.39 -691.98 -2.35 -35.82 16 19 C -0.24 -14.27 10.28 84.03 0.86 -13.40 16 20 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 21 C -0.07 -4.03 5.49 84.86 0.47 -3.57 16 22 N -0.95 -58.74 10.31 21.65 0.22 -58.52 16 23 Si 0.98 47.27 29.55 68.60 2.03 49.30 16 24 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 25 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 26 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 27 C 0.13 5.42 5.89 86.86 0.51 5.93 16 28 C -0.01 -0.17 9.39 22.73 0.21 0.04 16 29 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.06 0.26 8.14 -2.38 -0.02 0.24 16 31 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.07 0.62 8.09 -2.39 -0.02 0.60 16 33 H 0.09 0.43 8.09 -2.39 -0.02 0.41 16 34 H 0.19 1.26 8.06 -2.91 -0.02 1.23 16 35 H 0.19 1.51 6.42 -2.91 -0.02 1.49 16 36 H 0.42 4.54 6.54 -92.71 -0.61 3.94 16 37 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.05 1.48 7.46 -2.39 -0.02 1.46 16 39 H 0.08 1.56 8.10 -2.39 -0.02 1.54 16 40 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.08 2.34 8.04 -2.39 -0.02 2.33 16 42 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 43 H 0.01 0.38 7.38 -2.39 -0.02 0.37 16 44 H 0.00 0.20 7.50 -2.39 -0.02 0.18 16 45 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 46 H 0.03 1.32 8.07 -2.38 -0.02 1.30 16 47 H 0.02 0.96 8.00 -2.39 -0.02 0.94 16 48 H 0.14 2.77 7.74 -2.91 -0.02 2.75 16 Total: -1.00 -80.94 394.30 1.30 -79.64 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: 0.35 Total: 7.91 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 7.28 Total: 9.84 kcal Atomic # 7 Polarization: -113.23 SS G_CDS: -6.71 Total: -119.94 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -1.66 Total: -26.75 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Total: -80.94 1.30 -79.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664721803.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.087 kcal (2) G-P(sol) polarization free energy of solvation -80.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds