Wall clock time and date at job start Tue Mar 31 2020 17:50:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42895 * 1
3 3 C 1.42892 * 114.00152 * 2 1
4 4 C 1.50704 * 109.47485 * 180.02562 * 3 2 1
5 5 C 1.38356 * 120.34579 * 90.00139 * 4 3 2
6 6 N 1.31930 * 121.07882 * 180.02562 * 5 4 3
7 7 C 1.31699 * 121.87719 * 359.97223 * 6 5 4
8 8 C 1.39524 * 120.56822 * 0.26409 * 7 6 5
9 9 C 1.47832 * 120.55696 * 179.74377 * 8 7 6
10 10 O 1.21558 * 119.99909 * 180.02562 * 9 8 7
11 11 N 1.34777 * 120.00173 * 359.97438 * 9 8 7
12 12 C 1.46504 * 119.99893 * 180.02562 * 11 9 8
13 13 C 1.52999 * 109.47128 * 180.02562 * 12 11 9
14 14 C 1.52996 * 109.47355 * 180.02562 * 13 12 11
15 15 H 1.09001 * 110.88764 * 302.57078 * 14 13 12
16 16 C 1.55161 * 111.00714 * 178.64953 * 14 13 12
17 17 C 1.54317 * 102.94382 * 206.42261 * 16 14 13
18 18 N 1.47028 * 107.27211 * 22.19059 * 17 16 14
19 19 C 1.36934 * 125.64754 * 181.02505 * 18 17 16
20 20 H 1.08004 * 119.99576 * 180.02562 * 19 18 17
21 21 C 1.38811 * 120.00347 * 0.04136 * 19 18 17
22 22 N 1.31625 * 119.99636 * 359.97438 * 21 19 18
23 23 Si 1.86798 * 120.00177 * 180.02562 * 21 19 18
24 24 H 1.48501 * 109.47203 * 89.99958 * 23 21 19
25 25 H 1.48497 * 109.47208 * 209.99780 * 23 21 19
26 26 H 1.48505 * 109.47067 * 329.99996 * 23 21 19
27 27 C 1.47424 * 108.70163 * 1.06116 * 18 17 16
28 28 C 1.38353 * 120.34975 * 270.02698 * 4 3 2
29 29 H 1.08997 * 109.46944 * 299.99620 * 1 2 3
30 30 H 1.09004 * 109.47533 * 59.99974 * 1 2 3
31 31 H 1.09005 * 109.47260 * 179.97438 * 1 2 3
32 32 H 1.09000 * 109.47251 * 60.00555 * 3 2 1
33 33 H 1.09003 * 109.47307 * 300.00346 * 3 2 1
34 34 H 1.08001 * 119.46193 * 0.02562 * 5 4 3
35 35 H 1.08002 * 119.71152 * 179.97438 * 7 6 5
36 36 H 0.96996 * 120.00147 * 0.02562 * 11 9 8
37 37 H 1.09009 * 109.47251 * 299.99829 * 12 11 9
38 38 H 1.08996 * 109.47263 * 60.00456 * 12 11 9
39 39 H 1.09000 * 109.46805 * 300.00154 * 13 12 11
40 40 H 1.09002 * 109.46943 * 59.99466 * 13 12 11
41 41 H 1.09003 * 110.71724 * 324.78799 * 16 14 13
42 42 H 1.09002 * 110.71924 * 88.05707 * 16 14 13
43 43 H 1.09000 * 109.88343 * 262.77495 * 17 16 14
44 44 H 1.08998 * 110.01106 * 141.67763 * 17 16 14
45 45 H 0.96998 * 119.99211 * 180.02562 * 22 21 19
46 46 H 1.09006 * 110.36690 * 217.03385 * 27 18 17
47 47 H 1.08997 * 110.46156 * 94.75704 * 27 18 17
48 48 H 1.07997 * 120.85391 * 359.97438 * 28 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 6 3.5125 1.1864 -0.0006
5 6 4.2089 1.1315 -1.1949
6 7 5.5239 1.0269 -1.2124
7 6 6.2319 0.9707 -0.1033
8 6 5.6044 1.0151 1.1421
9 6 6.3989 0.9463 2.3869
10 8 5.8417 0.9855 3.4665
11 7 7.7410 0.8392 2.3247
12 6 8.5283 0.7704 3.5583
13 6 10.0134 0.6538 3.2096
14 6 10.8356 0.5813 4.4979
15 1 10.6524 1.4536 5.1254
16 6 12.3476 0.4281 4.1849
17 6 12.8893 -0.2892 5.4393
18 7 11.7529 -0.9688 6.0785
19 6 11.8088 -1.7030 7.2329
20 1 10.9139 -2.1652 7.6228
21 6 13.0155 -1.8530 7.9024
22 7 14.1062 -1.2899 7.4271
23 14 13.0919 -2.8553 9.4769
24 1 13.3832 -4.2736 9.1472
25 1 14.1652 -2.3203 10.3526
26 1 11.7881 -2.7688 10.1824
27 6 10.5435 -0.7294 5.2701
28 6 4.2099 1.1305 1.1930
29 1 -0.3633 0.5138 0.8900
30 1 -0.3634 0.5138 -0.8900
31 1 -0.3634 -1.0277 -0.0005
32 1 1.6887 1.8463 0.8900
33 1 1.6885 1.8464 -0.8900
34 1 3.6671 1.1750 -2.1282
35 1 7.3071 0.8847 -0.1584
36 1 8.1856 0.8076 1.4632
37 1 8.3632 1.6738 4.1455
38 1 8.2212 -0.1005 4.1372
39 1 10.1789 -0.2494 2.6222
40 1 10.3202 1.5249 2.6308
41 1 12.4972 -0.1843 3.2956
42 1 12.8176 1.4043 4.0657
43 1 13.3195 0.4395 6.1263
44 1 13.6454 -1.0204 5.1535
45 1 14.9495 -1.3951 7.8947
46 1 9.6743 -0.6036 5.9158
47 1 10.3818 -1.5521 4.5735
48 1 3.6916 1.1713 2.1396
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001664721803.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 17:50:26
Heat of formation + Delta-G solvation = -50.554357 kcal
Electronic energy + Delta-G solvation = -27199.347814 eV
Core-core repulsion = 23253.846451 eV
Total energy + Delta-G solvation = -3945.501362 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 333.184 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-41.78969 -40.30988 -39.36456 -38.69229 -36.56000 -34.84412 -34.07045 -33.40086
-32.22386 -30.67270 -28.52500 -28.17601 -26.74221 -26.50420 -25.32819 -23.77906
-23.47382 -21.86498 -21.69563 -20.79626 -18.95337 -18.86979 -18.08161 -17.67153
-17.39423 -17.00027 -16.74762 -16.61351 -16.40432 -16.23881 -16.08191 -15.57313
-15.23198 -14.99870 -14.60170 -14.23597 -14.10663 -13.96241 -13.83255 -13.66724
-13.35496 -13.31431 -13.08100 -12.91165 -12.78426 -12.67704 -12.37859 -12.22609
-12.01741 -11.79610 -11.66612 -11.38994 -11.31340 -11.25870 -11.01071 -10.73660
-10.70459 -10.51147 -10.34911 -10.07191 -8.88156 -7.85445 -5.20374 -0.48206
0.00829 1.43775 1.45854 1.54676 1.71143 1.99820 2.48977 2.58911
3.05168 3.25591 3.32189 3.58690 3.67551 3.70480 3.75131 3.80185
3.84311 4.00193 4.01116 4.16810 4.27231 4.36277 4.38493 4.49460
4.53514 4.56212 4.61940 4.63624 4.71497 4.77302 4.88917 4.89928
4.91870 5.00546 5.06408 5.14396 5.17517 5.27347 5.34838 5.43788
5.45003 5.54488 5.72327 5.80704 6.16314 6.21511 6.42483 6.73047
7.08954 7.11488 7.79685 8.43696 9.24765
Molecular weight = 333.18amu
Principal moments of inertia in cm(-1)
A = 0.021679 B = 0.001762 C = 0.001662
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1291.284013 B =15885.822450 C =16844.617108
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 O -0.415 6.415
3 C 0.105 3.895
4 C -0.153 4.153
5 C 0.145 3.855
6 N -0.502 5.502
7 C 0.146 3.854
8 C -0.200 4.200
9 C 0.560 3.440
10 O -0.579 6.579
11 N -0.705 5.705
12 C 0.122 3.878
13 C -0.100 4.100
14 C -0.085 4.085
15 H 0.073 0.927
16 C -0.122 4.122
17 C 0.180 3.820
18 N -0.631 5.631
19 C -0.244 4.244
20 H 0.078 0.922
21 C -0.068 4.068
22 N -0.951 5.951
23 Si 0.978 3.022
24 H -0.285 1.285
25 H -0.292 1.292
26 H -0.271 1.271
27 C 0.132 3.868
28 C -0.009 4.009
29 H 0.050 0.950
30 H 0.060 0.940
31 H 0.091 0.909
32 H 0.070 0.930
33 H 0.092 0.908
34 H 0.190 0.810
35 H 0.188 0.812
36 H 0.417 0.583
37 H 0.063 0.937
38 H 0.053 0.947
39 H 0.082 0.918
40 H 0.100 0.900
41 H 0.077 0.923
42 H 0.083 0.917
43 H 0.007 0.993
44 H 0.004 0.996
45 H 0.246 0.754
46 H 0.032 0.968
47 H 0.024 0.976
48 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.098 9.219 -23.158 34.670
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.335 6.335
3 C 0.029 3.971
4 C -0.155 4.155
5 C -0.012 4.012
6 N -0.210 5.210
7 C -0.012 4.012
8 C -0.205 4.205
9 C 0.347 3.653
10 O -0.460 6.460
11 N -0.358 5.358
12 C -0.001 4.001
13 C -0.138 4.138
14 C -0.105 4.105
15 H 0.091 0.909
16 C -0.160 4.160
17 C 0.055 3.945
18 N -0.358 5.358
19 C -0.373 4.373
20 H 0.096 0.904
21 C -0.261 4.261
22 N -0.600 5.600
23 Si 0.806 3.194
24 H -0.212 1.212
25 H -0.219 1.219
26 H -0.196 1.196
27 C 0.008 3.992
28 C -0.036 4.036
29 H 0.068 0.932
30 H 0.079 0.921
31 H 0.110 0.890
32 H 0.088 0.912
33 H 0.110 0.890
34 H 0.207 0.793
35 H 0.205 0.795
36 H 0.255 0.745
37 H 0.082 0.918
38 H 0.071 0.929
39 H 0.101 0.899
40 H 0.119 0.881
41 H 0.095 0.905
42 H 0.101 0.899
43 H 0.025 0.975
44 H 0.022 0.978
45 H 0.056 0.944
46 H 0.050 0.950
47 H 0.042 0.958
48 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges -23.777 8.985 -23.041 34.307
hybrid contribution 0.081 -0.548 1.986 2.062
sum -23.696 8.436 -21.054 32.802
Atomic orbital electron populations
1.22949 0.78982 1.03823 1.01327 1.87927 1.21771 1.28093 1.95715
1.21358 0.87175 0.85255 1.03326 1.20777 0.97124 1.04009 0.93564
1.23419 0.89719 0.89424 0.98616 1.67867 1.08616 1.13606 1.30875
1.23420 1.01606 0.90282 0.85891 1.20917 0.95192 1.09776 0.94595
1.18322 0.82676 0.75933 0.88362 1.90788 1.71868 1.51968 1.31383
1.45776 1.05572 1.73435 1.10973 1.21366 0.91001 1.01725 0.86053
1.21609 0.91037 1.04549 0.96613 1.22152 0.94931 0.97047 0.96386
0.90859 1.22761 0.95130 1.00722 0.97362 1.20959 0.88976 0.93265
0.91339 1.44842 1.05503 1.59735 1.25670 1.19466 0.94773 1.23835
0.99260 0.90408 1.25661 0.95413 1.02385 1.02669 1.70203 0.99055
1.49446 1.41289 0.85083 0.77288 0.77977 0.79029 1.21223 1.21856
1.19559 1.21837 0.88961 0.95502 0.92945 1.21758 0.92725 0.89579
0.99500 0.93184 0.92102 0.89035 0.91191 0.88990 0.79321 0.79487
0.74478 0.91843 0.92873 0.89901 0.88117 0.90463 0.89869 0.97496
0.97821 0.94443 0.95012 0.95788 0.84260
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.20 11.01 113.37 1.25 1.45 16
2 O -0.41 -6.06 10.69 -148.98 -1.59 -7.65 16
3 C 0.11 1.08 6.08 71.24 0.43 1.52 16
4 C -0.15 -2.18 5.52 -19.81 -0.11 -2.29 16
5 C 0.14 1.88 10.85 84.71 0.92 2.80 16
6 N -0.50 -7.96 10.35 -194.74 -2.01 -9.98 16
7 C 0.15 2.15 10.71 85.02 0.91 3.07 16
8 C -0.20 -3.80 5.89 -19.99 -0.12 -3.91 16
9 C 0.56 13.33 7.78 86.78 0.68 14.00 16
10 O -0.58 -19.04 16.42 -3.90 -0.06 -19.10 16
11 N -0.71 -13.06 5.51 -465.97 -2.57 -15.62 16
12 C 0.12 2.79 5.52 86.38 0.48 3.27 16
13 C -0.10 -2.04 4.84 30.59 0.15 -1.90 16
14 C -0.09 -2.64 3.07 -9.40 -0.03 -2.67 16
15 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16
16 C -0.12 -4.15 6.42 31.78 0.20 -3.95 16
17 C 0.18 8.99 5.38 86.73 0.47 9.46 16
18 N -0.63 -33.47 3.39 -691.98 -2.35 -35.82 16
19 C -0.24 -14.27 10.28 84.03 0.86 -13.40 16
20 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16
21 C -0.07 -4.03 5.49 84.86 0.47 -3.57 16
22 N -0.95 -58.74 10.31 21.65 0.22 -58.52 16
23 Si 0.98 47.27 29.55 68.60 2.03 49.30 16
24 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16
25 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16
26 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16
27 C 0.13 5.42 5.89 86.86 0.51 5.93 16
28 C -0.01 -0.17 9.39 22.73 0.21 0.04 16
29 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16
30 H 0.06 0.26 8.14 -2.38 -0.02 0.24 16
31 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16
32 H 0.07 0.62 8.09 -2.39 -0.02 0.60 16
33 H 0.09 0.43 8.09 -2.39 -0.02 0.41 16
34 H 0.19 1.26 8.06 -2.91 -0.02 1.23 16
35 H 0.19 1.51 6.42 -2.91 -0.02 1.49 16
36 H 0.42 4.54 6.54 -92.71 -0.61 3.94 16
37 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16
38 H 0.05 1.48 7.46 -2.39 -0.02 1.46 16
39 H 0.08 1.56 8.10 -2.39 -0.02 1.54 16
40 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16
41 H 0.08 2.34 8.04 -2.39 -0.02 2.33 16
42 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16
43 H 0.01 0.38 7.38 -2.39 -0.02 0.37 16
44 H 0.00 0.20 7.50 -2.39 -0.02 0.18 16
45 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16
46 H 0.03 1.32 8.07 -2.38 -0.02 1.30 16
47 H 0.02 0.96 8.00 -2.39 -0.02 0.94 16
48 H 0.14 2.77 7.74 -2.91 -0.02 2.75 16
Total: -1.00 -80.94 394.30 1.30 -79.64
By element:
Atomic # 1 Polarization: 7.56 SS G_CDS: 0.35 Total: 7.91 kcal
Atomic # 6 Polarization: 2.56 SS G_CDS: 7.28 Total: 9.84 kcal
Atomic # 7 Polarization: -113.23 SS G_CDS: -6.71 Total: -119.94 kcal
Atomic # 8 Polarization: -25.09 SS G_CDS: -1.66 Total: -26.75 kcal
Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal
Total: -80.94 1.30 -79.64 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001664721803.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.087 kcal
(2) G-P(sol) polarization free energy of solvation -80.937 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.850 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.296 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.642 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.554 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds