Wall clock time and date at job start Tue Mar 31 2020 17:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99968 * 2 1 4 4 C 1.50705 * 109.46802 * 179.97438 * 3 2 1 5 5 C 1.38345 * 120.34994 * 89.99940 * 4 3 2 6 6 N 1.31928 * 121.07713 * 180.25415 * 5 4 3 7 7 C 1.31692 * 121.88295 * 359.42599 * 6 5 4 8 8 C 1.39523 * 120.56353 * 0.57082 * 7 6 5 9 9 C 1.47842 * 120.56074 * 179.74659 * 8 7 6 10 10 O 1.21550 * 119.99763 * 179.97438 * 9 8 7 11 11 N 1.34775 * 119.99546 * 359.97438 * 9 8 7 12 12 C 1.46509 * 119.99523 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.46768 * 179.97438 * 12 11 9 14 14 C 1.53003 * 109.46882 * 179.97438 * 13 12 11 15 15 H 1.09000 * 110.88292 * 54.29969 * 14 13 12 16 16 C 1.55151 * 111.00481 * 178.18090 * 14 13 12 17 17 C 1.54323 * 102.94258 * 153.57931 * 16 14 13 18 18 N 1.47023 * 107.26952 * 337.80312 * 17 16 14 19 19 C 1.36933 * 125.64600 * 178.97654 * 18 17 16 20 20 H 1.08001 * 119.99803 * 174.79722 * 19 18 17 21 21 C 1.38814 * 120.00215 * 354.79297 * 19 18 17 22 22 N 1.31614 * 119.99802 * 7.05376 * 21 19 18 23 23 Si 1.86799 * 119.99941 * 187.05615 * 21 19 18 24 24 H 1.48502 * 109.47214 * 94.98719 * 23 21 19 25 25 H 1.48504 * 109.46788 * 214.98611 * 23 21 19 26 26 H 1.48500 * 109.47324 * 334.98695 * 23 21 19 27 27 C 1.47464 * 108.72353 * 358.98140 * 18 17 16 28 28 C 1.38356 * 120.34609 * 269.97012 * 4 3 2 29 29 H 1.08996 * 109.46510 * 60.00682 * 1 2 3 30 30 H 1.08995 * 109.47296 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47096 * 300.00539 * 1 2 3 32 32 H 1.08994 * 109.47281 * 59.99653 * 3 2 1 33 33 H 1.09001 * 109.46989 * 299.99123 * 3 2 1 34 34 H 1.07996 * 119.46430 * 359.97268 * 5 4 3 35 35 H 1.07992 * 119.72063 * 180.31391 * 7 6 5 36 36 H 0.96996 * 120.00830 * 359.97438 * 11 9 8 37 37 H 1.08995 * 109.47004 * 299.99818 * 12 11 9 38 38 H 1.08997 * 109.46654 * 60.00044 * 12 11 9 39 39 H 1.08998 * 109.47144 * 300.00256 * 13 12 11 40 40 H 1.09001 * 109.47120 * 60.00196 * 13 12 11 41 41 H 1.09000 * 110.72242 * 271.94215 * 16 14 13 42 42 H 1.09000 * 110.71859 * 35.03310 * 16 14 13 43 43 H 1.08991 * 109.88551 * 97.22613 * 17 16 14 44 44 H 1.09010 * 109.88104 * 218.23574 * 17 16 14 45 45 H 0.97008 * 120.00081 * 179.97438 * 22 21 19 46 46 H 1.09006 * 110.34459 * 265.24926 * 27 18 17 47 47 H 1.08994 * 110.40623 * 142.91294 * 27 18 17 48 48 H 1.08002 * 120.85650 * 0.02562 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.2099 1.1309 -1.1929 6 7 5.5246 1.0217 -1.2091 7 6 6.2321 0.9718 -0.0995 8 6 5.6040 1.0218 1.1453 9 6 6.3979 0.9602 2.3909 10 8 5.8402 1.0051 3.4699 11 7 7.7401 0.8543 2.3299 12 6 8.5270 0.7938 3.5643 13 6 10.0123 0.6755 3.2169 14 6 10.8341 0.6130 4.5060 15 1 10.4785 -0.1872 5.1550 16 6 12.3450 0.4467 4.1948 17 6 13.0235 1.0715 5.4321 18 7 12.0505 1.9850 6.0488 19 6 12.2567 2.7227 7.1838 20 1 11.5090 3.4298 7.5115 21 6 13.4267 2.5618 7.9133 22 7 14.3964 1.8061 7.4434 23 14 13.6247 3.4176 9.5618 24 1 13.2357 2.4876 10.6523 25 1 15.0415 3.8252 9.7408 26 1 12.7546 4.6202 9.6030 27 6 10.8155 1.9754 5.2430 28 6 4.2090 1.1320 1.1949 29 1 -0.3632 0.5137 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8463 -0.8901 34 1 3.6690 1.1732 -2.1267 35 1 7.3074 0.8873 -0.1536 36 1 8.1852 0.8181 1.4688 37 1 8.3605 1.7004 4.1460 38 1 8.2205 -0.0741 4.1482 39 1 10.1784 -0.2312 2.6353 40 1 10.3190 1.5432 2.6327 41 1 12.6061 -0.6076 4.1030 42 1 12.6141 0.9894 3.2887 43 1 13.2973 0.2889 6.1395 44 1 13.9128 1.6237 5.1279 45 1 15.2142 1.6939 7.9529 46 1 10.8252 2.7954 4.5248 47 1 9.9400 2.0456 5.8884 48 1 3.6900 1.1733 2.1412 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664721804.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:31 Heat of formation + Delta-G solvation = -25.794278 kcal Electronic energy + Delta-G solvation = -27173.338953 eV Core-core repulsion = 23228.911268 eV Total energy + Delta-G solvation = -3944.427685 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.07846 -39.43022 -38.22187 -37.78167 -35.37632 -33.53227 -33.17352 -32.40838 -30.73023 -28.99122 -28.01105 -26.79660 -26.06577 -25.15203 -24.15415 -23.12626 -22.25652 -20.81875 -19.98746 -19.48731 -18.19090 -17.44707 -17.04337 -16.94993 -16.80960 -16.01856 -15.82756 -15.74563 -15.45460 -15.00961 -14.58142 -14.24742 -14.17651 -13.64068 -13.60391 -13.57980 -13.44269 -12.95986 -12.48143 -12.42955 -12.27176 -11.99323 -11.95165 -11.83079 -11.55518 -11.09311 -10.86219 -10.76092 -10.55883 -10.32508 -10.28460 -10.11763 -9.97351 -9.92876 -9.79757 -9.71885 -9.64772 -9.60898 -9.19006 -8.53971 -6.78223 -5.68901 -3.00621 0.18600 0.65830 2.52648 2.86927 3.19567 3.42712 3.48065 3.49799 3.58147 3.82664 4.19738 4.26561 4.37207 4.43923 4.53415 4.57427 4.72424 4.84153 4.86437 4.89127 5.02094 5.08603 5.11258 5.18534 5.27113 5.50145 5.54252 5.61540 5.64647 5.65809 5.76344 5.86917 6.00602 6.03623 6.09548 6.20608 6.30780 6.40413 6.54239 6.57555 6.61624 6.75548 6.99357 7.24350 7.35328 7.59842 7.67888 7.86545 7.95075 8.30264 9.26144 9.86918 10.53751 11.43326 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025276 B = 0.001713 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.522136 B =16346.087438 C =17057.481129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.107 3.893 4 C -0.152 4.152 5 C 0.142 3.858 6 N -0.486 5.486 7 C 0.140 3.860 8 C -0.185 4.185 9 C 0.560 3.440 10 O -0.531 6.531 11 N -0.721 5.721 12 C 0.117 3.883 13 C -0.117 4.117 14 C -0.100 4.100 15 H 0.076 0.924 16 C -0.138 4.138 17 C 0.176 3.824 18 N -0.607 5.607 19 C -0.228 4.228 20 H 0.077 0.923 21 C -0.008 4.008 22 N -0.921 5.921 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.139 3.861 28 C 0.004 3.996 29 H 0.043 0.957 30 H 0.088 0.912 31 H 0.044 0.956 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.162 0.838 35 H 0.162 0.838 36 H 0.399 0.601 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.046 0.954 44 H 0.039 0.961 45 H 0.251 0.749 46 H 0.017 0.983 47 H 0.038 0.962 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.965 -3.510 -20.577 31.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.030 3.970 4 C -0.154 4.154 5 C -0.015 4.015 6 N -0.194 5.194 7 C -0.018 4.018 8 C -0.190 4.190 9 C 0.346 3.654 10 O -0.408 6.408 11 N -0.373 5.373 12 C -0.005 4.005 13 C -0.155 4.155 14 C -0.120 4.120 15 H 0.095 0.905 16 C -0.176 4.176 17 C 0.051 3.949 18 N -0.333 5.333 19 C -0.356 4.356 20 H 0.095 0.905 21 C -0.205 4.205 22 N -0.568 5.568 23 Si 0.740 3.260 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.207 1.207 27 C 0.013 3.987 28 C -0.022 4.022 29 H 0.062 0.938 30 H 0.107 0.893 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.179 0.821 35 H 0.179 0.821 36 H 0.234 0.766 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.034 0.966 47 H 0.056 0.944 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -23.616 -3.646 -20.411 31.426 hybrid contribution -0.178 0.667 1.276 1.450 sum -23.793 -2.980 -19.136 30.679 Atomic orbital electron populations 1.22794 0.80432 1.03173 1.00224 1.87978 1.20064 1.27005 1.95467 1.21235 0.88465 0.85539 1.01756 1.20576 0.95987 1.04702 0.94184 1.22916 0.89913 0.91054 0.97625 1.67769 1.07899 1.12909 1.30806 1.23066 1.00390 0.91543 0.86794 1.21059 0.95164 1.07791 0.95026 1.17977 0.82247 0.76932 0.88263 1.90811 1.70901 1.49532 1.29598 1.45993 1.06157 1.74447 1.10683 1.21574 0.90388 1.03109 0.85467 1.21762 0.92571 1.02275 0.98923 1.22268 0.95273 0.99676 0.94829 0.90534 1.22892 0.94564 1.00062 1.00112 1.21136 0.91149 0.92773 0.89827 1.44493 1.10420 1.50633 1.27753 1.19081 1.02501 1.15632 0.98432 0.90466 1.24816 0.96555 1.00149 0.98945 1.69984 1.06100 1.43042 1.37708 0.86131 0.76948 0.78749 0.84164 1.21643 1.21803 1.20657 1.21625 0.90627 0.93206 0.93212 1.21659 0.92500 0.89069 0.99004 0.93806 0.89315 0.93746 0.91718 0.91633 0.82097 0.82109 0.76625 0.90592 0.91091 0.91530 0.91191 0.92347 0.92569 0.93559 0.94291 0.93830 0.96556 0.94390 0.83291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.39 -3.00 10.69 -35.23 -0.38 -3.38 16 3 C 0.11 0.64 6.08 36.01 0.22 0.86 16 4 C -0.15 -1.20 5.52 -104.54 -0.58 -1.77 16 5 C 0.14 1.09 10.85 -17.47 -0.19 0.90 16 6 N -0.49 -4.45 10.35 -12.91 -0.13 -4.58 16 7 C 0.14 1.19 10.71 -17.13 -0.18 1.01 16 8 C -0.19 -1.85 5.89 -104.82 -0.62 -2.46 16 9 C 0.56 6.81 7.78 -12.33 -0.10 6.71 16 10 O -0.53 -8.50 16.42 5.32 0.09 -8.41 16 11 N -0.72 -7.38 5.51 -61.25 -0.34 -7.72 16 12 C 0.12 1.43 5.55 -4.04 -0.02 1.41 16 13 C -0.12 -1.40 4.84 -26.73 -0.13 -1.53 16 14 C -0.10 -1.65 3.04 -88.47 -0.27 -1.92 16 15 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 16 C -0.14 -2.49 6.42 -24.90 -0.16 -2.65 16 17 C 0.18 4.29 5.38 -3.06 -0.02 4.28 16 18 N -0.61 -15.72 3.40 -170.04 -0.58 -16.29 16 19 C -0.23 -6.49 10.26 -15.06 -0.15 -6.65 16 20 H 0.08 2.13 7.84 -52.49 -0.41 1.72 16 21 C -0.01 -0.24 5.48 -17.43 -0.10 -0.34 16 22 N -0.92 -27.43 10.36 55.49 0.57 -26.86 16 23 Si 0.91 22.46 29.56 -169.99 -5.02 17.44 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 C 0.14 2.86 6.04 -2.51 -0.02 2.84 16 28 C 0.00 0.04 9.39 -38.87 -0.37 -0.33 16 29 H 0.04 0.14 8.14 -51.93 -0.42 -0.29 16 30 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.06 0.33 8.09 -51.93 -0.42 -0.09 16 33 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 34 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.16 0.92 6.42 -52.49 -0.34 0.58 16 36 H 0.40 2.85 6.54 -40.82 -0.27 2.58 16 37 H 0.08 1.06 7.59 -51.93 -0.39 0.67 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.81 8.03 -51.93 -0.42 0.39 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.06 0.94 8.04 -51.93 -0.42 0.52 16 43 H 0.05 1.25 7.30 -51.93 -0.38 0.87 16 44 H 0.04 1.05 7.61 -51.92 -0.40 0.66 16 45 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 46 H 0.02 0.34 7.96 -51.93 -0.41 -0.08 16 47 H 0.04 0.78 8.10 -51.93 -0.42 0.36 16 48 H 0.15 1.40 7.74 -52.49 -0.41 1.00 16 LS Contribution 394.56 15.07 5.95 5.95 Total: -1.00 -35.34 394.56 -9.02 -44.35 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -7.62 Total: -2.10 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -1.56 Total: 1.61 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: -0.47 Total: -55.46 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: -0.29 Total: -11.79 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.34 -9.02 -44.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664721804.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.559 kcal (2) G-P(sol) polarization free energy of solvation -35.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds