Wall clock time and date at job start Tue Mar 31 2020 17:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99968 * 2 1 4 4 C 1.50705 * 109.46802 * 179.97438 * 3 2 1 5 5 C 1.38345 * 120.34994 * 89.99940 * 4 3 2 6 6 N 1.31928 * 121.07713 * 180.25415 * 5 4 3 7 7 C 1.31692 * 121.88295 * 359.42599 * 6 5 4 8 8 C 1.39523 * 120.56353 * 0.57082 * 7 6 5 9 9 C 1.47842 * 120.56074 * 179.74659 * 8 7 6 10 10 O 1.21550 * 119.99763 * 179.97438 * 9 8 7 11 11 N 1.34775 * 119.99546 * 359.97438 * 9 8 7 12 12 C 1.46509 * 119.99523 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.46768 * 179.97438 * 12 11 9 14 14 C 1.53003 * 109.46882 * 179.97438 * 13 12 11 15 15 H 1.09000 * 110.88292 * 54.29969 * 14 13 12 16 16 C 1.55151 * 111.00481 * 178.18090 * 14 13 12 17 17 C 1.54323 * 102.94258 * 153.57931 * 16 14 13 18 18 N 1.47023 * 107.26952 * 337.80312 * 17 16 14 19 19 C 1.36933 * 125.64600 * 178.97654 * 18 17 16 20 20 H 1.08001 * 119.99803 * 174.79722 * 19 18 17 21 21 C 1.38814 * 120.00215 * 354.79297 * 19 18 17 22 22 N 1.31614 * 119.99802 * 7.05376 * 21 19 18 23 23 Si 1.86799 * 119.99941 * 187.05615 * 21 19 18 24 24 H 1.48502 * 109.47214 * 94.98719 * 23 21 19 25 25 H 1.48504 * 109.46788 * 214.98611 * 23 21 19 26 26 H 1.48500 * 109.47324 * 334.98695 * 23 21 19 27 27 C 1.47464 * 108.72353 * 358.98140 * 18 17 16 28 28 C 1.38356 * 120.34609 * 269.97012 * 4 3 2 29 29 H 1.08996 * 109.46510 * 60.00682 * 1 2 3 30 30 H 1.08995 * 109.47296 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47096 * 300.00539 * 1 2 3 32 32 H 1.08994 * 109.47281 * 59.99653 * 3 2 1 33 33 H 1.09001 * 109.46989 * 299.99123 * 3 2 1 34 34 H 1.07996 * 119.46430 * 359.97268 * 5 4 3 35 35 H 1.07992 * 119.72063 * 180.31391 * 7 6 5 36 36 H 0.96996 * 120.00830 * 359.97438 * 11 9 8 37 37 H 1.08995 * 109.47004 * 299.99818 * 12 11 9 38 38 H 1.08997 * 109.46654 * 60.00044 * 12 11 9 39 39 H 1.08998 * 109.47144 * 300.00256 * 13 12 11 40 40 H 1.09001 * 109.47120 * 60.00196 * 13 12 11 41 41 H 1.09000 * 110.72242 * 271.94215 * 16 14 13 42 42 H 1.09000 * 110.71859 * 35.03310 * 16 14 13 43 43 H 1.08991 * 109.88551 * 97.22613 * 17 16 14 44 44 H 1.09010 * 109.88104 * 218.23574 * 17 16 14 45 45 H 0.97008 * 120.00081 * 179.97438 * 22 21 19 46 46 H 1.09006 * 110.34459 * 265.24926 * 27 18 17 47 47 H 1.08994 * 110.40623 * 142.91294 * 27 18 17 48 48 H 1.08002 * 120.85650 * 0.02562 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.2099 1.1309 -1.1929 6 7 5.5246 1.0217 -1.2091 7 6 6.2321 0.9718 -0.0995 8 6 5.6040 1.0218 1.1453 9 6 6.3979 0.9602 2.3909 10 8 5.8402 1.0051 3.4699 11 7 7.7401 0.8543 2.3299 12 6 8.5270 0.7938 3.5643 13 6 10.0123 0.6755 3.2169 14 6 10.8341 0.6130 4.5060 15 1 10.4785 -0.1872 5.1550 16 6 12.3450 0.4467 4.1948 17 6 13.0235 1.0715 5.4321 18 7 12.0505 1.9850 6.0488 19 6 12.2567 2.7227 7.1838 20 1 11.5090 3.4298 7.5115 21 6 13.4267 2.5618 7.9133 22 7 14.3964 1.8061 7.4434 23 14 13.6247 3.4176 9.5618 24 1 13.2357 2.4876 10.6523 25 1 15.0415 3.8252 9.7408 26 1 12.7546 4.6202 9.6030 27 6 10.8155 1.9754 5.2430 28 6 4.2090 1.1320 1.1949 29 1 -0.3632 0.5137 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8463 -0.8901 34 1 3.6690 1.1732 -2.1267 35 1 7.3074 0.8873 -0.1536 36 1 8.1852 0.8181 1.4688 37 1 8.3605 1.7004 4.1460 38 1 8.2205 -0.0741 4.1482 39 1 10.1784 -0.2312 2.6353 40 1 10.3190 1.5432 2.6327 41 1 12.6061 -0.6076 4.1030 42 1 12.6141 0.9894 3.2887 43 1 13.2973 0.2889 6.1395 44 1 13.9128 1.6237 5.1279 45 1 15.2142 1.6939 7.9529 46 1 10.8252 2.7954 4.5248 47 1 9.9400 2.0456 5.8884 48 1 3.6900 1.1733 2.1412 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664721804.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:30 Heat of formation + Delta-G solvation = -50.612705 kcal Electronic energy + Delta-G solvation = -27174.415160 eV Core-core repulsion = 23228.911268 eV Total energy + Delta-G solvation = -3945.503893 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.79034 -40.30860 -39.35748 -38.69027 -36.55956 -34.84336 -34.07083 -33.40297 -32.22806 -30.66616 -28.53057 -28.18988 -26.73160 -26.50322 -25.32800 -23.77839 -23.44894 -21.86994 -21.70960 -20.80306 -18.95681 -18.86151 -18.08146 -17.67562 -17.39163 -16.96957 -16.74832 -16.61696 -16.41266 -16.24232 -16.08202 -15.56650 -15.24805 -14.98353 -14.61677 -14.23754 -14.10920 -13.97739 -13.83551 -13.65200 -13.35423 -13.31662 -13.07374 -12.91362 -12.80015 -12.65906 -12.37951 -12.23219 -11.99925 -11.82463 -11.66562 -11.37826 -11.31888 -11.25941 -11.01108 -10.73677 -10.68544 -10.51062 -10.34946 -10.07193 -8.87735 -7.86725 -5.20302 -0.48181 0.00915 1.43778 1.46016 1.54778 1.71169 1.99953 2.48925 2.58896 3.04542 3.25786 3.31157 3.58716 3.67972 3.70501 3.75142 3.80470 3.84393 3.99739 4.01108 4.17167 4.27177 4.36017 4.38544 4.49492 4.53547 4.56561 4.62015 4.63809 4.71037 4.77632 4.89026 4.90050 4.92031 5.01237 5.06487 5.14215 5.17878 5.27253 5.34815 5.43787 5.45273 5.55158 5.71519 5.80590 6.15932 6.21317 6.42525 6.73093 7.08940 7.11226 7.79597 8.44105 9.24100 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025276 B = 0.001713 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.522136 B =16346.087438 C =17057.481129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.105 3.895 4 C -0.153 4.153 5 C 0.145 3.855 6 N -0.502 5.502 7 C 0.146 3.854 8 C -0.200 4.200 9 C 0.560 3.440 10 O -0.579 6.579 11 N -0.706 5.706 12 C 0.122 3.878 13 C -0.100 4.100 14 C -0.085 4.085 15 H 0.072 0.928 16 C -0.122 4.122 17 C 0.179 3.821 18 N -0.631 5.631 19 C -0.245 4.245 20 H 0.079 0.921 21 C -0.066 4.066 22 N -0.949 5.949 23 Si 0.976 3.024 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.269 1.269 27 C 0.133 3.867 28 C -0.009 4.009 29 H 0.060 0.940 30 H 0.092 0.908 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.190 0.810 35 H 0.188 0.812 36 H 0.417 0.583 37 H 0.054 0.946 38 H 0.062 0.938 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.008 0.992 44 H 0.002 0.998 45 H 0.247 0.753 46 H 0.025 0.975 47 H 0.033 0.967 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.378 -3.581 -23.103 34.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C 0.029 3.971 4 C -0.155 4.155 5 C -0.012 4.012 6 N -0.210 5.210 7 C -0.012 4.012 8 C -0.205 4.205 9 C 0.347 3.653 10 O -0.460 6.460 11 N -0.358 5.358 12 C -0.001 4.001 13 C -0.138 4.138 14 C -0.105 4.105 15 H 0.090 0.910 16 C -0.160 4.160 17 C 0.054 3.946 18 N -0.358 5.358 19 C -0.375 4.375 20 H 0.096 0.904 21 C -0.259 4.259 22 N -0.598 5.598 23 Si 0.804 3.196 24 H -0.215 1.215 25 H -0.219 1.219 26 H -0.193 1.193 27 C 0.008 3.992 28 C -0.036 4.036 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.207 0.793 35 H 0.205 0.795 36 H 0.255 0.745 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.117 0.883 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.026 0.974 44 H 0.020 0.980 45 H 0.056 0.944 46 H 0.043 0.957 47 H 0.051 0.949 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -25.047 -3.714 -22.993 34.202 hybrid contribution 0.187 0.712 2.022 2.151 sum -24.860 -3.001 -20.971 32.662 Atomic orbital electron populations 1.22950 0.78984 1.03853 1.01304 1.87925 1.21760 1.28025 1.95715 1.21353 0.87187 0.85278 1.03292 1.20773 0.97117 1.04006 0.93567 1.23413 0.89711 0.89424 0.98629 1.67861 1.08639 1.13612 1.30859 1.23416 1.01595 0.90295 0.85893 1.20920 0.95178 1.09786 0.94596 1.18318 0.82679 0.75923 0.88359 1.90785 1.71852 1.51918 1.31435 1.45779 1.05546 1.73469 1.10975 1.21365 0.90960 1.01762 0.86029 1.21610 0.90997 1.04593 0.96618 1.22148 0.95091 0.96767 0.96539 0.90978 1.22753 0.94610 1.01115 0.97511 1.20954 0.90733 0.91281 0.91619 1.44848 1.12659 1.50402 1.27843 1.19467 1.02491 1.15900 0.99599 0.90364 1.25660 0.96443 1.01451 1.02379 1.70205 1.06311 1.44539 1.38753 0.85094 0.76732 0.78026 0.79720 1.21455 1.21907 1.19346 1.21852 0.88286 0.96027 0.93045 1.21759 0.92735 0.89584 0.99489 0.92149 0.88941 0.93223 0.91250 0.89032 0.79329 0.79493 0.74480 0.92714 0.91969 0.88254 0.89801 0.89993 0.90393 0.97366 0.98009 0.94415 0.95674 0.94905 0.84252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 11.01 113.37 1.25 1.44 16 2 O -0.41 -5.89 10.69 -148.98 -1.59 -7.48 16 3 C 0.11 1.08 6.08 71.24 0.43 1.51 16 4 C -0.15 -2.17 5.52 -19.81 -0.11 -2.28 16 5 C 0.14 1.88 10.85 84.70 0.92 2.80 16 6 N -0.50 -7.95 10.35 -194.77 -2.01 -9.97 16 7 C 0.15 2.15 10.71 85.02 0.91 3.06 16 8 C -0.20 -3.78 5.89 -19.99 -0.12 -3.90 16 9 C 0.56 13.27 7.78 86.79 0.68 13.95 16 10 O -0.58 -18.95 16.42 -3.87 -0.06 -19.02 16 11 N -0.71 -13.00 5.51 -465.97 -2.57 -15.56 16 12 C 0.12 2.78 5.55 86.38 0.48 3.26 16 13 C -0.10 -2.04 4.84 30.60 0.15 -1.90 16 14 C -0.09 -2.65 3.04 -9.40 -0.03 -2.68 16 15 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 16 C -0.12 -4.15 6.42 31.78 0.20 -3.95 16 17 C 0.18 8.95 5.38 86.73 0.47 9.42 16 18 N -0.63 -33.33 3.40 -691.89 -2.35 -35.68 16 19 C -0.25 -14.29 10.26 84.03 0.86 -13.42 16 20 H 0.08 4.39 7.84 -2.91 -0.02 4.37 16 21 C -0.07 -3.89 5.48 84.86 0.46 -3.43 16 22 N -0.95 -58.54 10.36 21.65 0.22 -58.31 16 23 Si 0.98 47.09 29.56 68.60 2.03 49.12 16 24 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 25 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 26 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 27 C 0.13 5.39 6.04 86.85 0.52 5.91 16 28 C -0.01 -0.17 9.39 22.73 0.21 0.04 16 29 H 0.06 0.24 8.14 -2.39 -0.02 0.23 16 30 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.07 0.62 8.09 -2.39 -0.02 0.60 16 33 H 0.09 0.44 8.09 -2.39 -0.02 0.42 16 34 H 0.19 1.25 8.06 -2.91 -0.02 1.23 16 35 H 0.19 1.51 6.42 -2.91 -0.02 1.49 16 36 H 0.42 4.52 6.54 -92.71 -0.61 3.92 16 37 H 0.05 1.50 7.59 -2.39 -0.02 1.48 16 38 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.10 1.50 8.14 -2.39 -0.02 1.49 16 40 H 0.08 1.56 8.03 -2.39 -0.02 1.55 16 41 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.08 2.35 8.04 -2.39 -0.02 2.33 16 43 H 0.01 0.46 7.30 -2.39 -0.02 0.44 16 44 H 0.00 0.09 7.61 -2.38 -0.02 0.08 16 45 H 0.25 14.74 8.31 -92.70 -0.77 13.96 16 46 H 0.03 0.99 7.96 -2.38 -0.02 0.98 16 47 H 0.03 1.35 8.10 -2.39 -0.02 1.33 16 48 H 0.14 2.77 7.74 -2.91 -0.02 2.74 16 Total: -1.00 -80.56 394.56 1.31 -79.25 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: 0.35 Total: 7.83 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 7.29 Total: 9.83 kcal Atomic # 7 Polarization: -112.82 SS G_CDS: -6.71 Total: -119.53 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -1.66 Total: -26.50 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -80.56 1.31 -79.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664721804.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.634 kcal (2) G-P(sol) polarization free energy of solvation -80.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds