Wall clock time and date at job start Tue Mar 31 2020 17:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35431 * 116.99397 * 2 1 4 4 N 1.32232 * 119.80307 * 0.02562 * 3 2 1 5 5 C 1.31877 * 121.80048 * 179.97438 * 4 3 2 6 6 C 1.38358 * 121.18920 * 0.02562 * 5 4 3 7 7 C 1.38342 * 119.45328 * 359.73520 * 6 5 4 8 8 C 1.39987 * 118.34777 * 0.50486 * 7 6 5 9 9 C 1.47526 * 120.59604 * 179.78297 * 8 7 6 10 10 O 1.21586 * 120.00197 * 179.72001 * 9 8 7 11 11 N 1.34784 * 119.99888 * 359.71244 * 9 8 7 12 12 C 1.46496 * 119.99989 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.46876 * 324.99846 * 12 11 9 14 14 C 1.52997 * 109.47278 * 84.99813 * 12 11 9 15 15 C 1.53002 * 109.46978 * 60.00269 * 14 12 11 16 16 C 1.53002 * 109.47128 * 59.99726 * 15 14 12 17 17 C 1.52992 * 109.47106 * 300.00123 * 16 15 14 18 18 C 1.52997 * 109.47482 * 60.00162 * 17 16 15 19 19 H 1.09002 * 109.47153 * 59.99783 * 18 17 16 20 20 C 1.53000 * 109.47060 * 180.02562 * 18 17 16 21 21 N 1.46506 * 109.46901 * 294.99627 * 20 18 17 22 22 C 1.36934 * 119.99799 * 180.02562 * 21 20 18 23 23 H 1.08008 * 119.99865 * 359.97438 * 22 21 20 24 24 C 1.38808 * 120.00098 * 180.02562 * 22 21 20 25 25 N 1.31620 * 119.99795 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00232 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47293 * 60.00109 * 26 24 22 28 28 H 1.48498 * 109.47332 * 180.02562 * 26 24 22 29 29 H 1.48507 * 109.46904 * 299.99934 * 26 24 22 30 30 H 1.08998 * 109.47063 * 60.00497 * 1 2 3 31 31 H 1.09005 * 109.46441 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47350 * 300.00259 * 1 2 3 33 33 H 1.08001 * 119.40797 * 180.02562 * 5 4 3 34 34 H 1.07994 * 120.27286 * 179.97438 * 6 5 4 35 35 H 1.07998 * 120.82375 * 180.25368 * 7 6 5 36 36 H 0.97000 * 119.99844 * 0.02562 * 11 9 8 37 37 H 1.09002 * 109.47045 * 180.02562 * 14 12 11 38 38 H 1.08998 * 109.47171 * 299.99443 * 14 12 11 39 39 H 1.08996 * 109.46698 * 179.97438 * 15 14 12 40 40 H 1.09002 * 109.46838 * 299.99316 * 15 14 12 41 41 H 1.09002 * 109.47070 * 60.00059 * 16 15 14 42 42 H 1.08996 * 109.46550 * 179.97438 * 16 15 14 43 43 H 1.09002 * 109.47103 * 299.99915 * 17 16 15 44 44 H 1.08998 * 109.46862 * 180.02562 * 17 16 15 45 45 H 1.08990 * 109.47170 * 54.99895 * 20 18 17 46 46 H 1.09001 * 109.46952 * 174.99972 * 20 18 17 47 47 H 0.97000 * 119.99867 * 0.02562 * 21 20 18 48 48 H 0.97005 * 119.99685 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0437 1.2068 0.0000 4 7 1.3196 2.3132 0.0005 5 6 1.8769 3.5084 0.0010 6 6 3.2524 3.6577 0.0005 7 6 4.0586 2.5335 0.0050 8 6 3.4449 1.2754 -0.0009 9 6 4.2570 0.0437 -0.0013 10 8 3.7126 -1.0435 -0.0013 11 7 5.6024 0.1237 -0.0017 12 6 6.4089 -1.0994 -0.0027 13 1 5.9063 -1.8664 0.5866 14 6 6.5841 -1.5936 -1.4400 15 6 7.2895 -0.5170 -2.2671 16 6 8.6619 -0.2234 -1.6578 17 6 8.4867 0.2708 -0.2206 18 6 7.7813 -0.8058 0.6066 19 1 8.3813 -1.7158 0.6059 20 6 7.6055 -0.3112 2.0437 21 7 8.9208 -0.1435 2.6668 22 6 9.0145 0.2930 3.9613 23 1 8.1188 0.5140 4.5229 24 6 10.2607 0.4523 4.5516 25 7 11.3523 0.1844 3.8667 26 14 10.3886 1.0484 6.3172 27 1 9.6865 0.0952 7.2136 28 1 11.8186 1.1346 6.7083 29 1 9.7625 2.3900 6.4333 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0278 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.2483 4.3866 0.0019 34 1 3.6930 4.6437 0.0006 35 1 5.1348 2.6243 0.0089 36 1 6.0367 0.9910 -0.0015 37 1 7.1837 -2.5039 -1.4406 38 1 5.6063 -1.8029 -1.8740 39 1 7.4147 -0.8693 -3.2909 40 1 6.6894 0.3930 -2.2665 41 1 9.2620 -1.1334 -1.6585 42 1 9.1646 0.5433 -2.2474 43 1 7.8866 1.1808 -0.2199 44 1 9.4643 0.4804 0.2133 45 1 7.0819 0.6447 2.0375 46 1 7.0253 -1.0396 2.6102 47 1 9.7252 -0.3417 2.1623 48 1 12.2232 0.2961 4.2791 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669967225.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:06 Heat of formation + Delta-G solvation = -35.384838 kcal Electronic energy + Delta-G solvation = -29408.173908 eV Core-core repulsion = 25463.330346 eV Total energy + Delta-G solvation = -3944.843563 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.12475 -39.91660 -38.07972 -37.88040 -34.64061 -33.79978 -32.73046 -31.89170 -31.10730 -29.79619 -29.32917 -27.41497 -25.35810 -24.72196 -23.19785 -22.97238 -22.20844 -21.22629 -20.50763 -18.99101 -18.65487 -17.86481 -17.24390 -16.99234 -16.25622 -15.57035 -15.38704 -15.22621 -14.76997 -14.66290 -14.52033 -14.27567 -13.98496 -13.70141 -13.48555 -13.32545 -13.20976 -13.03917 -12.84469 -12.66080 -12.06553 -11.96417 -11.92172 -11.64611 -11.41989 -11.38945 -10.89170 -10.87548 -10.70788 -10.34566 -10.25369 -10.22856 -10.20654 -9.97587 -9.83743 -9.65804 -9.58953 -8.92714 -8.84623 -8.68323 -6.91274 -5.76582 -3.04720 0.46664 0.98710 2.86941 2.88414 3.20313 3.43983 3.48597 3.49498 3.67015 4.00465 4.46943 4.56317 4.58892 4.72461 4.86859 4.90896 4.92557 4.96206 5.10517 5.13537 5.18540 5.28435 5.35795 5.43495 5.56138 5.57755 5.62722 5.65754 5.70471 5.77696 5.78106 5.85042 6.04295 6.07942 6.16793 6.19205 6.25031 6.29921 6.39739 6.49183 6.63220 6.68885 6.82747 6.89280 7.01904 7.46167 7.64054 7.70184 8.34206 8.42724 9.53930 10.11790 10.46799 11.46229 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010954 B = 0.003311 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.560281 B = 8454.567734 C = 9735.124041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.270 6.270 3 C 0.370 3.630 4 N -0.547 5.547 5 C 0.163 3.837 6 C -0.219 4.219 7 C -0.007 4.007 8 C -0.206 4.206 9 C 0.563 3.437 10 O -0.520 6.520 11 N -0.712 5.712 12 C 0.157 3.843 13 H 0.089 0.911 14 C -0.128 4.128 15 C -0.115 4.115 16 C -0.121 4.121 17 C -0.110 4.110 18 C -0.102 4.102 19 H 0.086 0.914 20 C 0.160 3.840 21 N -0.730 5.730 22 C -0.239 4.239 23 H 0.068 0.932 24 C -0.013 4.013 25 N -0.934 5.934 26 Si 0.906 3.094 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.287 1.287 30 H 0.058 0.942 31 H 0.098 0.902 32 H 0.058 0.942 33 H 0.164 0.836 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.397 0.603 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.052 0.948 44 H 0.079 0.921 45 H 0.017 0.983 46 H 0.018 0.982 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.072 4.977 -14.578 22.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.173 6.173 3 C 0.190 3.810 4 N -0.272 5.272 5 C 0.006 3.994 6 C -0.239 4.239 7 C -0.033 4.033 8 C -0.212 4.212 9 C 0.349 3.651 10 O -0.396 6.396 11 N -0.365 5.365 12 C 0.052 3.948 13 H 0.107 0.893 14 C -0.167 4.167 15 C -0.153 4.153 16 C -0.158 4.158 17 C -0.147 4.147 18 C -0.121 4.121 19 H 0.104 0.896 20 C 0.032 3.968 21 N -0.375 5.375 22 C -0.370 4.370 23 H 0.086 0.914 24 C -0.209 4.209 25 N -0.583 5.583 26 Si 0.737 3.263 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.076 0.924 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.181 0.819 34 H 0.162 0.838 35 H 0.163 0.837 36 H 0.234 0.766 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.098 0.902 45 H 0.035 0.965 46 H 0.036 0.964 47 H 0.218 0.782 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -18.300 3.837 -14.403 23.602 hybrid contribution 1.264 1.055 0.927 1.889 sum -17.036 4.892 -13.476 22.266 Atomic orbital electron populations 1.22947 0.77663 1.03257 1.02182 1.86546 1.22200 1.22978 1.85625 1.19867 0.88159 0.85113 0.87873 1.67466 1.40389 0.98704 1.20611 1.22645 0.93092 0.93719 0.89925 1.21948 0.94721 1.00027 1.07252 1.21708 1.00846 0.90607 0.90162 1.20101 0.91647 0.95220 1.14239 1.17724 0.82155 0.88165 0.77039 1.90814 1.71678 1.28267 1.48892 1.45986 1.05320 1.10237 1.74989 1.20957 0.91063 0.86599 0.96145 0.89297 1.21904 1.00803 0.98645 0.95337 1.21490 0.96461 0.98903 0.98442 1.21587 0.96619 1.01230 0.96396 1.21524 1.01835 0.97280 0.94089 1.21636 0.94309 1.00139 0.96039 0.89552 1.20639 0.89468 0.96976 0.89675 1.42358 1.01876 1.80621 1.12647 1.19179 0.92272 1.36391 0.89153 0.91386 1.24713 0.95396 1.02524 0.98277 1.69645 0.96907 1.55268 1.36464 0.86283 0.76512 0.78606 0.84885 1.21290 1.21697 1.21331 0.92361 0.88403 0.92280 0.81912 0.83768 0.83721 0.76634 0.90992 0.91691 0.92502 0.92394 0.91858 0.92292 0.92902 0.90232 0.96529 0.96399 0.78207 0.93499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.38 101.05 1.05 1.39 16 2 O -0.27 -3.83 8.58 -39.76 -0.34 -4.17 16 3 C 0.37 4.98 7.51 -16.61 -0.12 4.85 16 4 N -0.55 -6.27 9.21 -12.98 -0.12 -6.39 16 5 C 0.16 1.39 11.17 -17.49 -0.20 1.19 16 6 C -0.22 -1.75 10.09 -39.50 -0.40 -2.14 16 7 C -0.01 -0.07 9.64 -38.89 -0.37 -0.45 16 8 C -0.21 -2.67 5.90 -104.69 -0.62 -3.29 16 9 C 0.56 8.39 7.74 -12.47 -0.10 8.29 16 10 O -0.52 -9.43 14.85 -16.48 -0.24 -9.67 16 11 N -0.71 -9.34 3.57 -54.85 -0.20 -9.54 16 12 C 0.16 2.19 2.23 -67.93 -0.15 2.04 16 13 H 0.09 1.41 7.58 -51.93 -0.39 1.01 16 14 C -0.13 -1.57 5.60 -26.73 -0.15 -1.72 16 15 C -0.12 -1.26 5.77 -26.73 -0.15 -1.41 16 16 C -0.12 -1.41 5.92 -26.73 -0.16 -1.57 16 17 C -0.11 -1.54 4.90 -26.74 -0.13 -1.67 16 18 C -0.10 -1.57 2.02 -90.62 -0.18 -1.75 16 19 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 20 C 0.16 3.15 5.42 -4.04 -0.02 3.13 16 21 N -0.73 -18.04 5.33 -59.91 -0.32 -18.36 16 22 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 23 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 25 N -0.93 -27.91 13.06 55.49 0.72 -27.19 16 26 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 30 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 31 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 33 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.15 1.13 6.52 -52.49 -0.34 0.79 16 36 H 0.40 4.58 4.77 -40.82 -0.19 4.39 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.62 7.60 -51.93 -0.39 0.23 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.05 0.68 6.51 -51.93 -0.34 0.35 16 44 H 0.08 1.33 7.18 -51.93 -0.37 0.96 16 45 H 0.02 0.33 7.60 -51.93 -0.39 -0.07 16 46 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.38 9.87 6.85 -40.82 -0.28 9.59 16 48 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 383.44 15.07 5.78 5.78 Total: -1.00 -34.01 383.44 -9.02 -43.03 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -7.33 Total: 9.52 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -1.95 Total: -0.37 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: 0.09 Total: -61.48 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.59 Total: -13.84 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.01 -9.02 -43.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669967225.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.649 kcal (2) G-P(sol) polarization free energy of solvation -34.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds