Wall clock time and date at job start Tue Mar 31 2020 17:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35647 * 117.00290 * 2 1 4 4 C 1.38718 * 120.14603 * 0.25565 * 3 2 1 5 5 C 1.38055 * 120.08019 * 180.28072 * 4 3 2 6 6 C 1.38555 * 120.39130 * 359.73957 * 5 4 3 7 7 C 1.37782 * 120.29806 * 359.97438 * 6 5 4 8 8 C 1.39701 * 119.91112 * 0.02562 * 7 6 5 9 9 C 1.47540 * 120.19414 * 179.97438 * 8 7 6 10 10 O 1.21584 * 120.00313 * 180.02562 * 9 8 7 11 11 N 1.34775 * 119.99729 * 0.02562 * 9 8 7 12 12 C 1.46498 * 120.00107 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47542 * 179.97438 * 12 11 9 14 14 N 1.46899 * 109.47218 * 179.97438 * 13 12 11 15 15 C 1.46902 * 110.99712 * 170.00213 * 14 13 12 16 16 C 1.53237 * 109.33805 * 172.74361 * 15 14 13 17 17 N 1.47079 * 108.52132 * 53.83315 * 16 15 14 18 18 C 1.36941 * 120.88448 * 128.78817 * 17 16 15 19 19 H 1.07997 * 119.99918 * 206.58402 * 18 17 16 20 20 C 1.38807 * 119.99583 * 26.58782 * 18 17 16 21 21 N 1.31618 * 120.00188 * 17.02141 * 20 18 17 22 22 Si 1.86799 * 119.99686 * 197.01988 * 20 18 17 23 23 H 1.48497 * 109.47556 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47149 * 120.00406 * 22 20 18 25 25 H 1.48503 * 109.47120 * 239.99923 * 22 20 18 26 26 C 1.47083 * 118.23330 * 308.81493 * 17 16 15 27 27 C 1.46891 * 110.99901 * 45.70069 * 14 13 12 28 28 H 1.09002 * 109.47334 * 299.99539 * 1 2 3 29 29 H 1.08996 * 109.47187 * 59.99967 * 1 2 3 30 30 H 1.09008 * 109.47305 * 180.02562 * 1 2 3 31 31 H 1.07996 * 119.96136 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.80577 * 179.76198 * 5 4 3 33 33 H 1.07998 * 119.84691 * 180.02562 * 6 5 4 34 34 H 1.08007 * 120.04286 * 180.02562 * 7 6 5 35 35 H 0.97001 * 120.00420 * 359.97438 * 11 9 8 36 36 H 1.09008 * 109.47306 * 60.00001 * 12 11 9 37 37 H 1.08994 * 109.47165 * 300.00070 * 12 11 9 38 38 H 1.09008 * 109.46529 * 59.99881 * 13 12 11 39 39 H 1.08994 * 109.47237 * 300.00381 * 13 12 11 40 40 H 1.09004 * 109.49329 * 52.78786 * 15 14 13 41 41 H 1.08999 * 109.49244 * 292.70731 * 15 14 13 42 42 H 1.09002 * 109.62613 * 173.53722 * 16 15 14 43 43 H 1.08998 * 109.63440 * 293.92450 * 16 15 14 44 44 H 0.97006 * 119.99914 * 179.97438 * 21 20 18 45 45 H 1.09001 * 109.62421 * 170.89529 * 26 17 16 46 46 H 1.09004 * 109.62775 * 291.46820 * 26 17 16 47 47 H 1.09002 * 109.49547 * 67.29328 * 27 14 13 48 48 H 1.08990 * 109.49859 * 307.21082 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2924 2.3739 0.0054 5 6 1.9206 3.6033 -0.0005 6 6 3.3038 3.6836 -0.0063 7 6 4.0667 2.5363 -0.0058 8 6 3.4441 1.2857 0.0001 9 6 4.2550 0.0531 0.0002 10 8 3.7095 -1.0335 0.0048 11 7 5.6004 0.1316 -0.0050 12 6 6.4056 -1.0922 -0.0055 13 6 7.8910 -0.7255 -0.0124 14 7 8.6984 -1.9528 -0.0123 15 6 10.1151 -1.6509 -0.2568 16 6 10.9451 -2.9253 -0.0698 17 7 10.3782 -3.9814 -0.9222 18 6 11.1732 -4.6969 -1.7774 19 1 10.7496 -5.1359 -2.6685 20 6 12.5235 -4.8579 -1.4987 21 7 12.9767 -4.6286 -0.2845 22 14 13.6972 -5.4000 -2.8469 23 1 12.9437 -5.5902 -4.1123 24 1 14.7394 -4.3607 -3.0434 25 1 14.3418 -6.6798 -2.4570 26 6 8.9346 -4.2481 -0.8322 27 6 8.1837 -2.9215 -0.9891 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 0.2138 2.3195 0.0091 32 1 1.3304 4.5077 -0.0002 33 1 3.7861 4.6499 -0.0105 34 1 5.1447 2.6037 -0.0099 35 1 6.0357 0.9985 -0.0091 36 1 6.1728 -1.6800 -0.8935 37 1 6.1794 -1.6764 0.8865 38 1 8.1242 -0.1375 0.8754 39 1 8.1170 -0.1416 -0.9045 40 1 10.4520 -0.8908 0.4481 41 1 10.2380 -1.2828 -1.2754 42 1 11.9783 -2.7353 -0.3607 43 1 10.9099 -3.2354 0.9745 44 1 13.9203 -4.7415 -0.0897 45 1 8.6385 -4.9327 -1.6271 46 1 8.7032 -4.6873 0.1382 47 1 8.3335 -2.5359 -1.9976 48 1 7.1199 -3.0831 -0.8154 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690080793.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:41 Heat of formation + Delta-G solvation = -1.231932 kcal Electronic energy + Delta-G solvation = -28093.517970 eV Core-core repulsion = 24150.155388 eV Total energy + Delta-G solvation = -3943.362582 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.85246 -39.24452 -38.17730 -37.62482 -35.37405 -33.93196 -31.99026 -31.23562 -30.52463 -30.10364 -28.61889 -27.58775 -26.00094 -24.15917 -23.45428 -22.51970 -22.33206 -21.17078 -20.66920 -19.10453 -18.73266 -17.41634 -16.87839 -16.61469 -16.15334 -15.74083 -15.47035 -15.36820 -15.08676 -14.91583 -14.36895 -14.32694 -14.04705 -13.83495 -13.59944 -13.46736 -13.24024 -12.95641 -12.91453 -12.61007 -12.38009 -12.05374 -11.65850 -11.52715 -11.50632 -11.35829 -11.29531 -11.00823 -10.71351 -10.43686 -10.26744 -10.04339 -9.90435 -9.71451 -9.57698 -9.50071 -9.05454 -8.61045 -8.48689 -7.83811 -6.63955 -5.75759 -3.16519 0.50084 0.97807 2.71883 2.90798 3.01144 3.38590 3.46451 3.48893 3.55146 4.27435 4.31414 4.45255 4.53122 4.60621 4.66607 4.80034 4.85124 4.89130 4.98060 5.08521 5.17706 5.18063 5.36891 5.41548 5.46316 5.55336 5.71410 5.81839 5.86564 5.93630 5.97762 5.99676 6.07479 6.17540 6.24349 6.25707 6.31900 6.41223 6.55858 6.72197 6.97290 6.99929 7.26046 7.41808 7.57955 7.65438 7.71681 7.83989 8.20039 8.45991 9.23925 9.87363 10.45988 11.33183 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.027904 B = 0.001946 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.211368 B =14383.727985 C =14950.197787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.280 6.280 3 C 0.185 3.815 4 C -0.222 4.222 5 C -0.054 4.054 6 C -0.168 4.168 7 C -0.048 4.048 8 C -0.171 4.171 9 C 0.558 3.442 10 O -0.517 6.517 11 N -0.728 5.728 12 C 0.117 3.883 13 C 0.044 3.956 14 N -0.527 5.527 15 C 0.037 3.963 16 C 0.178 3.822 17 N -0.596 5.596 18 C -0.249 4.249 19 H 0.066 0.934 20 C -0.001 4.001 21 N -0.904 5.904 22 Si 0.902 3.098 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.148 3.852 27 C 0.034 3.966 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.103 0.897 31 H 0.134 0.866 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.133 0.867 35 H 0.396 0.604 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.032 0.968 40 H 0.061 0.939 41 H 0.026 0.974 42 H 0.089 0.911 43 H 0.027 0.973 44 H 0.253 0.747 45 H 0.056 0.944 46 H 0.027 0.973 47 H 0.028 0.972 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.335 19.701 1.606 30.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.190 6.190 3 C 0.136 3.864 4 C -0.241 4.241 5 C -0.073 4.073 6 C -0.186 4.186 7 C -0.066 4.066 8 C -0.175 4.175 9 C 0.344 3.656 10 O -0.393 6.393 11 N -0.381 5.381 12 C -0.006 4.006 13 C -0.085 4.085 14 N -0.253 5.253 15 C -0.092 4.092 16 C 0.052 3.948 17 N -0.319 5.319 18 C -0.379 4.379 19 H 0.084 0.916 20 C -0.199 4.199 21 N -0.549 5.549 22 Si 0.732 3.268 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.217 1.217 26 C 0.021 3.979 27 C -0.095 4.095 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.122 0.878 31 H 0.152 0.848 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.151 0.849 35 H 0.230 0.770 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.050 0.950 40 H 0.079 0.921 41 H 0.044 0.956 42 H 0.107 0.893 43 H 0.045 0.955 44 H 0.063 0.937 45 H 0.074 0.926 46 H 0.045 0.955 47 H 0.047 0.953 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -23.496 18.405 2.114 29.921 hybrid contribution 0.717 0.838 -1.410 1.790 sum -22.780 19.243 0.704 29.828 Atomic orbital electron populations 1.23181 0.78655 1.04493 1.01112 1.86398 1.20813 1.25341 1.86458 1.19080 0.91007 0.84978 0.91321 1.21269 1.00403 0.92069 1.10313 1.21136 0.94773 0.97091 0.94272 1.21003 0.93848 0.98541 1.05234 1.21198 0.99977 0.90816 0.94636 1.19401 0.90902 0.94144 1.13025 1.17938 0.81845 0.88667 0.77106 1.90840 1.71513 1.28636 1.48295 1.45866 1.05954 1.10064 1.76250 1.21560 0.89550 0.86138 1.03338 1.22256 0.91792 0.93701 1.00705 1.62027 1.03039 1.09633 1.50606 1.22920 0.87280 1.00895 0.98141 1.20858 0.96229 0.83914 0.93846 1.44143 1.02253 1.38529 1.47010 1.19245 0.90492 1.28175 0.99974 0.91586 1.25027 0.98471 1.00435 0.95963 1.70041 1.13844 1.53399 1.17574 0.86224 0.81118 0.77845 0.81608 1.20330 1.21624 1.21731 1.20991 0.85480 0.92593 0.98787 1.22797 0.98664 0.95262 0.92770 0.92587 0.92590 0.87828 0.84790 0.85305 0.85166 0.84918 0.76963 0.90848 0.90368 0.90657 0.94969 0.92056 0.95578 0.89291 0.95481 0.93701 0.92570 0.95530 0.95348 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 101.05 0.99 1.13 16 2 O -0.28 -3.37 8.57 -40.52 -0.35 -3.71 16 3 C 0.18 2.00 6.70 -38.69 -0.26 1.74 16 4 C -0.22 -1.70 9.03 -39.47 -0.36 -2.05 16 5 C -0.05 -0.34 10.03 -39.53 -0.40 -0.74 16 6 C -0.17 -1.08 10.02 -39.63 -0.40 -1.47 16 7 C -0.05 -0.37 9.53 -39.20 -0.37 -0.75 16 8 C -0.17 -1.90 5.89 -104.85 -0.62 -2.52 16 9 C 0.56 7.67 7.76 -12.47 -0.10 7.57 16 10 O -0.52 -9.18 15.16 -16.59 -0.25 -9.43 16 11 N -0.73 -8.38 5.51 -61.35 -0.34 -8.72 16 12 C 0.12 1.59 4.92 -4.04 -0.02 1.57 16 13 C 0.04 0.60 5.38 -3.82 -0.02 0.58 16 14 N -0.53 -9.41 4.78 -234.33 -1.12 -10.53 16 15 C 0.04 0.71 5.58 -3.70 -0.02 0.69 16 16 C 0.18 4.33 5.42 -3.60 -0.02 4.31 16 17 N -0.60 -15.39 3.04 -172.01 -0.52 -15.91 16 18 C -0.25 -6.97 9.63 -15.06 -0.15 -7.11 16 19 H 0.07 1.82 7.88 -52.49 -0.41 1.40 16 20 C 0.00 -0.02 4.93 -17.43 -0.09 -0.11 16 21 N -0.90 -26.50 11.15 55.49 0.62 -25.88 16 22 Si 0.90 21.91 29.59 -169.99 -5.03 16.88 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 C 0.15 3.26 6.69 -3.60 -0.02 3.23 16 27 C 0.03 0.64 5.04 -3.71 -0.02 0.62 16 28 H 0.06 0.29 7.65 -51.93 -0.40 -0.11 16 29 H 0.06 0.29 7.67 -51.93 -0.40 -0.11 16 30 H 0.10 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.13 0.71 6.30 -52.49 -0.33 0.38 16 32 H 0.13 0.46 8.06 -52.49 -0.42 0.03 16 33 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 34 H 0.13 0.71 6.40 -52.48 -0.34 0.38 16 35 H 0.40 3.29 6.50 -40.82 -0.27 3.03 16 36 H 0.07 1.09 6.18 -51.92 -0.32 0.77 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.08 0.93 8.14 -51.92 -0.42 0.51 16 39 H 0.03 0.42 8.08 -51.93 -0.42 0.00 16 40 H 0.06 1.06 8.11 -51.93 -0.42 0.64 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.09 2.38 6.12 -51.93 -0.32 2.07 16 43 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.06 1.19 7.95 -51.93 -0.41 0.78 16 46 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.07 1.16 5.73 -51.93 -0.30 0.87 16 LS Contribution 381.49 15.07 5.75 5.75 Total: -1.00 -34.88 381.49 -10.37 -45.25 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -7.27 Total: -0.40 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -1.86 Total: 6.70 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: -1.36 Total: -61.03 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -0.60 Total: -13.14 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.88 -10.37 -45.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690080793.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.016 kcal (2) G-P(sol) polarization free energy of solvation -34.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds