Wall clock time and date at job start Tue Mar 31 2020 17:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35647 * 117.00290 * 2 1 4 4 C 1.38718 * 120.14603 * 0.25565 * 3 2 1 5 5 C 1.38055 * 120.08019 * 180.28072 * 4 3 2 6 6 C 1.38555 * 120.39130 * 359.73957 * 5 4 3 7 7 C 1.37782 * 120.29806 * 359.97438 * 6 5 4 8 8 C 1.39701 * 119.91112 * 0.02562 * 7 6 5 9 9 C 1.47540 * 120.19414 * 179.97438 * 8 7 6 10 10 O 1.21584 * 120.00313 * 180.02562 * 9 8 7 11 11 N 1.34775 * 119.99729 * 0.02562 * 9 8 7 12 12 C 1.46498 * 120.00107 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47542 * 179.97438 * 12 11 9 14 14 N 1.46899 * 109.47218 * 179.97438 * 13 12 11 15 15 C 1.46902 * 110.99712 * 170.00213 * 14 13 12 16 16 C 1.53237 * 109.33805 * 172.74361 * 15 14 13 17 17 N 1.47079 * 108.52132 * 53.83315 * 16 15 14 18 18 C 1.36941 * 120.88448 * 128.78817 * 17 16 15 19 19 H 1.07997 * 119.99918 * 206.58402 * 18 17 16 20 20 C 1.38807 * 119.99583 * 26.58782 * 18 17 16 21 21 N 1.31618 * 120.00188 * 17.02141 * 20 18 17 22 22 Si 1.86799 * 119.99686 * 197.01988 * 20 18 17 23 23 H 1.48497 * 109.47556 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47149 * 120.00406 * 22 20 18 25 25 H 1.48503 * 109.47120 * 239.99923 * 22 20 18 26 26 C 1.47083 * 118.23330 * 308.81493 * 17 16 15 27 27 C 1.46891 * 110.99901 * 45.70069 * 14 13 12 28 28 H 1.09002 * 109.47334 * 299.99539 * 1 2 3 29 29 H 1.08996 * 109.47187 * 59.99967 * 1 2 3 30 30 H 1.09008 * 109.47305 * 180.02562 * 1 2 3 31 31 H 1.07996 * 119.96136 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.80577 * 179.76198 * 5 4 3 33 33 H 1.07998 * 119.84691 * 180.02562 * 6 5 4 34 34 H 1.08007 * 120.04286 * 180.02562 * 7 6 5 35 35 H 0.97001 * 120.00420 * 359.97438 * 11 9 8 36 36 H 1.09008 * 109.47306 * 60.00001 * 12 11 9 37 37 H 1.08994 * 109.47165 * 300.00070 * 12 11 9 38 38 H 1.09008 * 109.46529 * 59.99881 * 13 12 11 39 39 H 1.08994 * 109.47237 * 300.00381 * 13 12 11 40 40 H 1.09004 * 109.49329 * 52.78786 * 15 14 13 41 41 H 1.08999 * 109.49244 * 292.70731 * 15 14 13 42 42 H 1.09002 * 109.62613 * 173.53722 * 16 15 14 43 43 H 1.08998 * 109.63440 * 293.92450 * 16 15 14 44 44 H 0.97006 * 119.99914 * 179.97438 * 21 20 18 45 45 H 1.09001 * 109.62421 * 170.89529 * 26 17 16 46 46 H 1.09004 * 109.62775 * 291.46820 * 26 17 16 47 47 H 1.09002 * 109.49547 * 67.29328 * 27 14 13 48 48 H 1.08990 * 109.49859 * 307.21082 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2924 2.3739 0.0054 5 6 1.9206 3.6033 -0.0005 6 6 3.3038 3.6836 -0.0063 7 6 4.0667 2.5363 -0.0058 8 6 3.4441 1.2857 0.0001 9 6 4.2550 0.0531 0.0002 10 8 3.7095 -1.0335 0.0048 11 7 5.6004 0.1316 -0.0050 12 6 6.4056 -1.0922 -0.0055 13 6 7.8910 -0.7255 -0.0124 14 7 8.6984 -1.9528 -0.0123 15 6 10.1151 -1.6509 -0.2568 16 6 10.9451 -2.9253 -0.0698 17 7 10.3782 -3.9814 -0.9222 18 6 11.1732 -4.6969 -1.7774 19 1 10.7496 -5.1359 -2.6685 20 6 12.5235 -4.8579 -1.4987 21 7 12.9767 -4.6286 -0.2845 22 14 13.6972 -5.4000 -2.8469 23 1 12.9437 -5.5902 -4.1123 24 1 14.7394 -4.3607 -3.0434 25 1 14.3418 -6.6798 -2.4570 26 6 8.9346 -4.2481 -0.8322 27 6 8.1837 -2.9215 -0.9891 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 0.2138 2.3195 0.0091 32 1 1.3304 4.5077 -0.0002 33 1 3.7861 4.6499 -0.0105 34 1 5.1447 2.6037 -0.0099 35 1 6.0357 0.9985 -0.0091 36 1 6.1728 -1.6800 -0.8935 37 1 6.1794 -1.6764 0.8865 38 1 8.1242 -0.1375 0.8754 39 1 8.1170 -0.1416 -0.9045 40 1 10.4520 -0.8908 0.4481 41 1 10.2380 -1.2828 -1.2754 42 1 11.9783 -2.7353 -0.3607 43 1 10.9099 -3.2354 0.9745 44 1 13.9203 -4.7415 -0.0897 45 1 8.6385 -4.9327 -1.6271 46 1 8.7032 -4.6873 0.1382 47 1 8.3335 -2.5359 -1.9976 48 1 7.1199 -3.0831 -0.8154 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690080793.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:40 Heat of formation + Delta-G solvation = -25.507097 kcal Electronic energy + Delta-G solvation = -28094.570620 eV Core-core repulsion = 24150.155388 eV Total energy + Delta-G solvation = -3944.415232 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.58876 -40.26806 -39.60782 -38.26382 -36.87192 -35.39384 -33.35744 -32.54376 -31.71886 -31.08760 -30.01934 -28.24530 -27.58217 -25.42462 -24.72640 -24.10515 -23.08502 -22.44909 -21.59432 -20.82031 -19.46412 -18.76017 -18.14852 -17.54124 -16.99157 -16.89574 -16.65907 -16.49044 -16.07399 -15.92685 -15.66409 -15.57379 -15.37163 -15.16491 -15.07739 -14.83101 -14.43801 -14.29181 -14.07105 -13.48589 -13.15395 -13.10916 -13.02837 -12.97954 -12.63083 -12.56623 -12.42338 -12.27551 -12.11045 -12.04379 -12.03179 -11.91234 -11.51478 -11.43635 -10.91794 -10.60040 -10.23884 -9.97207 -9.29685 -9.23415 -8.69322 -7.88364 -5.33113 -0.13619 0.41723 1.45788 1.47085 1.58302 1.89447 2.02803 2.35102 2.50329 2.86090 3.07081 3.26968 3.65376 3.69174 3.76818 3.85250 4.00385 4.05494 4.23169 4.28155 4.32810 4.35843 4.35901 4.42296 4.43089 4.53025 4.55700 4.62088 4.69070 4.70272 4.82720 4.85900 4.91371 4.93658 5.03061 5.17296 5.17699 5.32884 5.34789 5.37778 5.47632 5.60653 5.68934 5.77250 6.12273 6.20355 6.36751 6.38374 6.56911 7.12730 7.24629 7.82634 8.37204 9.18698 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.027904 B = 0.001946 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.211368 B =14383.727985 C =14950.197787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.320 6.320 3 C 0.159 3.841 4 C -0.224 4.224 5 C -0.047 4.047 6 C -0.166 4.166 7 C -0.046 4.046 8 C -0.204 4.204 9 C 0.553 3.447 10 O -0.570 6.570 11 N -0.713 5.713 12 C 0.127 3.873 13 C 0.054 3.946 14 N -0.540 5.540 15 C 0.053 3.947 16 C 0.183 3.817 17 N -0.615 5.615 18 C -0.264 4.264 19 H 0.066 0.934 20 C -0.053 4.053 21 N -0.935 5.935 22 Si 0.970 3.030 23 H -0.268 1.268 24 H -0.287 1.287 25 H -0.292 1.292 26 C 0.143 3.857 27 C 0.049 3.951 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.106 0.894 31 H 0.155 0.845 32 H 0.163 0.837 33 H 0.162 0.838 34 H 0.155 0.845 35 H 0.413 0.587 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.098 0.902 39 H 0.048 0.952 40 H 0.089 0.911 41 H 0.024 0.976 42 H 0.060 0.940 43 H -0.001 1.001 44 H 0.251 0.749 45 H 0.058 0.942 46 H 0.015 0.985 47 H 0.026 0.974 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.458 23.114 0.936 33.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.232 6.232 3 C 0.111 3.889 4 C -0.243 4.243 5 C -0.065 4.065 6 C -0.184 4.184 7 C -0.065 4.065 8 C -0.208 4.208 9 C 0.342 3.658 10 O -0.449 6.449 11 N -0.367 5.367 12 C 0.003 3.997 13 C -0.074 4.074 14 N -0.266 5.266 15 C -0.076 4.076 16 C 0.057 3.943 17 N -0.339 5.339 18 C -0.394 4.394 19 H 0.084 0.916 20 C -0.248 4.248 21 N -0.581 5.581 22 Si 0.798 3.202 23 H -0.193 1.193 24 H -0.213 1.213 25 H -0.219 1.219 26 C 0.017 3.983 27 C -0.080 4.080 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.124 0.876 31 H 0.172 0.828 32 H 0.180 0.820 33 H 0.179 0.821 34 H 0.173 0.827 35 H 0.251 0.749 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.116 0.884 39 H 0.067 0.933 40 H 0.107 0.893 41 H 0.043 0.957 42 H 0.078 0.922 43 H 0.017 0.983 44 H 0.060 0.940 45 H 0.076 0.924 46 H 0.033 0.967 47 H 0.044 0.956 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -24.636 21.871 1.440 32.975 hybrid contribution 0.959 -0.173 -1.153 1.510 sum -23.677 21.697 0.287 32.116 Atomic orbital electron populations 1.23402 0.76740 1.05282 1.02640 1.86334 1.23120 1.26825 1.86923 1.19459 0.91393 0.85615 0.92470 1.21550 1.01416 0.91555 1.09773 1.21620 0.95238 0.97659 0.91965 1.21429 0.94058 0.99236 1.03633 1.21482 1.01302 0.89959 0.93732 1.19430 0.91125 0.94061 1.16144 1.18477 0.82314 0.89091 0.75928 1.90801 1.72507 1.30713 1.50926 1.45658 1.05350 1.10266 1.75461 1.21286 0.89790 0.86783 1.01837 1.22240 0.90704 0.91940 1.02520 1.61920 1.02682 1.11642 1.50341 1.22597 0.87658 0.98493 0.98826 1.20656 0.95891 0.85916 0.91827 1.44431 1.03536 1.38995 1.46917 1.19557 0.91235 1.28191 1.00375 0.91629 1.25813 0.99928 1.01033 0.98009 1.70198 1.13891 1.54674 1.19378 0.85168 0.78788 0.77063 0.79170 1.19268 1.21340 1.21918 1.21124 0.84088 0.94897 0.98181 1.22569 0.99027 0.93567 0.92874 0.90968 0.91004 0.87581 0.82770 0.81957 0.82086 0.82726 0.74863 0.92320 0.92090 0.88399 0.93331 0.89308 0.95734 0.92189 0.98325 0.93990 0.92355 0.96739 0.95581 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.81 113.37 1.11 1.30 16 2 O -0.32 -7.99 8.57 -68.69 -0.59 -8.58 16 3 C 0.16 3.39 6.70 22.85 0.15 3.54 16 4 C -0.22 -2.95 9.03 22.34 0.20 -2.75 16 5 C -0.05 -0.41 10.03 22.30 0.22 -0.19 16 6 C -0.17 -1.48 10.02 22.24 0.22 -1.25 16 7 C -0.05 -0.61 9.53 22.52 0.21 -0.39 16 8 C -0.20 -4.41 5.89 -20.01 -0.12 -4.53 16 9 C 0.55 15.34 7.76 86.70 0.67 16.01 16 10 O -0.57 -21.19 15.16 16.94 0.26 -20.94 16 11 N -0.71 -15.58 5.51 -466.27 -2.57 -18.15 16 12 C 0.13 3.32 4.92 86.38 0.43 3.74 16 13 C 0.05 1.34 5.38 86.30 0.46 1.80 16 14 N -0.54 -18.58 4.78 -895.28 -4.28 -22.85 16 15 C 0.05 2.02 5.58 86.38 0.48 2.50 16 16 C 0.18 9.12 5.42 86.35 0.47 9.59 16 17 N -0.61 -32.42 3.04 -698.12 -2.12 -34.54 16 18 C -0.26 -14.98 9.63 84.03 0.81 -14.17 16 19 H 0.07 3.65 7.88 -2.91 -0.02 3.63 16 20 C -0.05 -3.00 4.93 84.86 0.42 -2.58 16 21 N -0.94 -56.29 11.15 21.65 0.24 -56.05 16 22 Si 0.97 45.61 29.59 68.60 2.03 47.64 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 24 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 25 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 26 C 0.14 6.39 6.69 86.35 0.58 6.97 16 27 C 0.05 1.78 5.04 86.38 0.44 2.21 16 28 H 0.07 0.69 7.65 -2.39 -0.02 0.67 16 29 H 0.07 0.69 7.67 -2.39 -0.02 0.67 16 30 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.15 1.24 6.30 -2.91 -0.02 1.22 16 32 H 0.16 0.32 8.06 -2.91 -0.02 0.29 16 33 H 0.16 0.45 8.06 -2.91 -0.02 0.43 16 34 H 0.16 1.14 6.40 -2.91 -0.02 1.12 16 35 H 0.41 5.85 6.50 -92.71 -0.60 5.24 16 36 H 0.06 1.72 6.18 -2.38 -0.01 1.70 16 37 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 39 H 0.05 1.10 8.08 -2.39 -0.02 1.09 16 40 H 0.09 2.87 8.11 -2.38 -0.02 2.85 16 41 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.06 3.31 6.12 -2.39 -0.01 3.30 16 43 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 44 H 0.25 14.51 8.31 -92.70 -0.77 13.74 16 45 H 0.06 2.52 7.95 -2.39 -0.02 2.50 16 46 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.09 2.93 5.73 -2.39 -0.01 2.91 16 Total: -1.00 -79.79 381.49 0.11 -79.68 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 0.37 Total: 11.98 kcal Atomic # 6 Polarization: 15.04 SS G_CDS: 6.76 Total: 21.81 kcal Atomic # 7 Polarization: -122.86 SS G_CDS: -8.72 Total: -131.58 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.33 Total: -29.52 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -79.79 0.11 -79.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690080793.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.177 kcal (2) G-P(sol) polarization free energy of solvation -79.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds