Wall clock time and date at job start Tue Mar 31 2020 17:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35914 * 116.99482 * 2 1 4 4 C 1.39137 * 120.46686 * 180.02562 * 3 2 1 5 5 C 1.38541 * 118.37262 * 179.97438 * 4 3 2 6 6 C 1.38262 * 119.21821 * 0.27327 * 5 4 3 7 7 C 1.50702 * 119.55443 * 179.72725 * 6 5 4 8 8 C 1.50695 * 109.47259 * 125.00005 * 7 6 5 9 9 O 1.21287 * 119.99847 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00071 * 180.02562 * 8 7 6 11 11 C 1.46925 * 120.63161 * 354.93050 * 10 8 7 12 12 C 1.53192 * 108.77534 * 233.59252 * 11 10 8 13 13 C 1.53041 * 109.31176 * 305.36048 * 12 11 10 14 14 C 1.53040 * 109.53740 * 61.36705 * 13 12 11 15 15 C 1.46922 * 120.63112 * 174.65509 * 10 8 7 16 16 H 1.08999 * 109.59013 * 246.19598 * 15 10 8 17 17 C 1.53006 * 109.58952 * 6.62326 * 15 10 8 18 18 N 1.46498 * 109.47263 * 181.28002 * 17 15 10 19 19 C 1.36939 * 119.99483 * 185.48988 * 18 17 15 20 20 H 1.07998 * 120.00451 * 359.97438 * 19 18 17 21 21 C 1.38812 * 119.99580 * 179.97438 * 19 18 17 22 22 N 1.31623 * 120.00106 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99961 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47378 * 60.00095 * 23 21 19 25 25 H 1.48501 * 109.47203 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.47329 * 300.00052 * 23 21 19 27 27 N 1.31841 * 120.88395 * 359.42738 * 6 5 4 28 28 C 1.31839 * 121.78283 * 0.58856 * 27 6 5 29 29 H 1.09009 * 109.47025 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47398 * 299.99689 * 1 2 3 31 31 H 1.09000 * 109.47482 * 60.00315 * 1 2 3 32 32 H 1.07998 * 120.81785 * 359.95129 * 4 3 2 33 33 H 1.07997 * 120.38960 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.46838 * 245.00154 * 7 6 5 35 35 H 1.09003 * 109.47028 * 4.99589 * 7 6 5 36 36 H 1.09005 * 109.58690 * 353.37519 * 11 10 8 37 37 H 1.08989 * 109.58915 * 113.79850 * 11 10 8 38 38 H 1.08996 * 109.50378 * 65.31380 * 12 11 10 39 39 H 1.09009 * 109.49775 * 185.38057 * 12 11 10 40 40 H 1.08997 * 109.46152 * 181.38630 * 13 12 11 41 41 H 1.08996 * 109.46255 * 301.36003 * 13 12 11 42 42 H 1.09006 * 109.49477 * 58.58608 * 14 13 12 43 43 H 1.09000 * 109.50182 * 178.64951 * 14 13 12 44 44 H 1.09001 * 109.46804 * 301.27991 * 17 15 10 45 45 H 1.08997 * 109.46599 * 61.27462 * 17 15 10 46 46 H 0.96996 * 120.00291 * 5.48493 * 18 17 15 47 47 H 0.97000 * 119.99736 * 179.97438 * 22 21 19 48 48 H 1.08006 * 119.65812 * 179.72763 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2111 0.0000 4 6 3.4347 1.2953 -0.0005 5 6 4.0181 2.5519 -0.0011 6 6 3.2077 3.6722 0.0047 7 6 3.8342 5.0428 0.0104 8 6 3.3009 5.8438 -1.1493 9 8 2.4921 5.3500 -1.9063 10 7 3.7235 7.1083 -1.3459 11 6 4.6177 7.7578 -0.3778 12 6 3.9951 9.0899 0.0519 13 6 3.6951 9.9324 -1.1901 14 6 2.6913 9.1944 -2.0789 15 6 3.3037 7.8615 -2.5355 16 1 4.1683 8.0522 -3.1712 17 6 2.2606 7.0548 -3.3116 18 7 1.8664 7.7945 -4.5132 19 6 0.8580 7.3201 -5.3090 20 1 0.3537 6.4005 -5.0512 21 6 0.4840 8.0212 -6.4472 22 7 1.0983 9.1421 -6.7612 23 14 -0.8910 7.3738 -7.5333 24 1 -2.1441 7.2796 -6.7421 25 1 -1.0955 8.2985 -8.6771 26 1 -0.5261 6.0281 -8.0445 27 7 1.8943 3.5574 -0.0006 28 6 1.3001 2.3805 -0.0001 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 4.0432 0.4030 -0.0002 33 1 5.0931 2.6552 -0.0011 34 1 3.5910 5.5495 0.9444 35 1 4.9163 4.9480 -0.0804 36 1 4.7420 7.1147 0.4935 37 1 5.5872 7.9402 -0.8411 38 1 3.0694 8.9005 0.5952 39 1 4.6918 9.6262 0.6962 40 1 3.2747 10.8909 -0.8859 41 1 4.6173 10.1005 -1.7463 42 1 1.7778 9.0039 -1.5154 43 1 2.4599 9.8054 -2.9514 44 1 2.6858 6.0935 -3.5999 45 1 1.3859 6.8912 -2.6822 46 1 2.3195 8.6202 -4.7449 47 1 0.8372 9.6318 -7.5568 48 1 0.2214 2.3264 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690477113.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:44 Heat of formation + Delta-G solvation = -32.452045 kcal Electronic energy + Delta-G solvation = -29102.551062 eV Core-core repulsion = 25157.834675 eV Total energy + Delta-G solvation = -3944.716387 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.86457 -41.22151 -39.25089 -38.19145 -36.62497 -34.29746 -33.68996 -33.37348 -32.99443 -31.39013 -29.21849 -28.22293 -27.52562 -25.60960 -24.93140 -24.35375 -23.42739 -22.43945 -21.71653 -20.07894 -19.16448 -19.06870 -18.21326 -17.66752 -17.29468 -16.83555 -16.72577 -16.48146 -16.24103 -15.48051 -15.40667 -15.31397 -15.12697 -14.98894 -14.92681 -14.50976 -14.48280 -14.17061 -13.89069 -13.86216 -13.45033 -13.09783 -13.04295 -12.95296 -12.84326 -12.77238 -12.65213 -12.31862 -12.22993 -12.06310 -11.98543 -11.79221 -11.54257 -11.36109 -10.99435 -10.67230 -10.35202 -10.06632 -9.49664 -9.33003 -8.95117 -7.98103 -5.25840 0.12097 0.33361 1.40384 1.44878 1.51479 1.80957 2.02443 2.23073 2.53995 2.81040 3.33586 3.34298 3.61881 3.66615 3.75690 3.89546 3.94412 3.99236 4.11131 4.16055 4.19222 4.31079 4.31713 4.32329 4.39023 4.46014 4.54063 4.57275 4.65741 4.68031 4.72483 4.75524 4.87104 4.97573 5.00744 5.11287 5.11822 5.15819 5.21988 5.30632 5.34203 5.42806 5.51685 5.53875 5.75251 6.19630 6.25127 6.59663 7.07679 7.30517 7.40081 8.06141 8.33998 9.25331 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.008451 B = 0.003725 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3312.358253 B = 7515.964772 C =10367.427287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.323 6.323 3 C 0.064 3.936 4 C -0.116 4.116 5 C -0.116 4.116 6 C 0.083 3.917 7 C -0.074 4.074 8 C 0.499 3.501 9 O -0.560 6.560 10 N -0.608 5.608 11 C 0.101 3.899 12 C -0.129 4.129 13 C -0.115 4.115 14 C -0.119 4.119 15 C 0.151 3.849 16 H 0.070 0.930 17 C 0.182 3.818 18 N -0.745 5.745 19 C -0.245 4.245 20 H 0.056 0.944 21 C -0.070 4.070 22 N -0.966 5.966 23 Si 0.973 3.027 24 H -0.281 1.281 25 H -0.284 1.284 26 H -0.281 1.281 27 N -0.461 5.461 28 C 0.002 3.998 29 H 0.127 0.873 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.167 0.833 33 H 0.182 0.818 34 H 0.132 0.868 35 H 0.151 0.849 36 H 0.120 0.880 37 H 0.088 0.912 38 H 0.056 0.944 39 H 0.110 0.890 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.042 0.958 43 H 0.051 0.949 44 H 0.017 0.983 45 H 0.004 0.996 46 H 0.373 0.627 47 H 0.254 0.746 48 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.668 -11.130 23.646 28.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.236 6.236 3 C 0.016 3.984 4 C -0.142 4.142 5 C -0.136 4.136 6 C -0.056 4.056 7 C -0.114 4.114 8 C 0.288 3.712 9 O -0.437 6.437 10 N -0.343 5.343 11 C -0.020 4.020 12 C -0.167 4.167 13 C -0.152 4.152 14 C -0.157 4.157 15 C 0.047 3.953 16 H 0.087 0.913 17 C 0.056 3.944 18 N -0.390 5.390 19 C -0.377 4.377 20 H 0.075 0.925 21 C -0.262 4.262 22 N -0.617 5.617 23 Si 0.801 3.199 24 H -0.207 1.207 25 H -0.209 1.209 26 H -0.207 1.207 27 N -0.170 5.170 28 C -0.156 4.156 29 H 0.145 0.855 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.184 0.816 33 H 0.200 0.800 34 H 0.149 0.851 35 H 0.169 0.831 36 H 0.138 0.862 37 H 0.107 0.893 38 H 0.075 0.925 39 H 0.128 0.872 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.060 0.940 43 H 0.070 0.930 44 H 0.035 0.965 45 H 0.022 0.978 46 H 0.205 0.795 47 H 0.062 0.938 48 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 10.675 -10.988 23.228 27.825 hybrid contribution -1.102 -0.476 -1.321 1.785 sum 9.573 -11.464 21.907 26.514 Atomic orbital electron populations 1.23364 0.76469 1.05942 1.02024 1.86033 1.23330 1.25665 1.88534 1.20273 0.94147 0.85669 0.98270 1.21273 0.91332 0.99995 1.01617 1.22192 1.02933 0.90582 0.97866 1.20966 0.88982 0.96077 0.99603 1.20715 1.02854 0.90027 0.97818 1.21218 0.81259 0.81826 0.86940 1.90852 1.34098 1.71298 1.47432 1.48266 1.49623 1.12973 1.23450 1.22161 0.92600 0.94812 0.92433 1.21927 1.01970 0.95690 0.97151 1.21529 0.98645 0.98591 0.96449 1.21876 0.98706 0.95412 0.99737 1.21254 0.96235 0.91663 0.86114 0.91250 1.21052 0.94550 0.92429 0.86376 1.42723 1.41933 1.27848 1.26503 1.19429 1.10051 1.04798 1.03406 0.92547 1.25503 1.02787 0.97898 1.00051 1.69794 1.45736 1.17990 1.28183 0.85231 0.79142 0.77304 0.78208 1.20695 1.20950 1.20744 1.67245 1.13311 1.27408 1.09057 1.23006 1.01060 0.87335 1.04185 0.85472 0.91451 0.92823 0.81556 0.80028 0.85067 0.83137 0.86200 0.89331 0.92482 0.87208 0.91046 0.90822 0.93952 0.92980 0.96489 0.97813 0.79460 0.93753 0.82469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.82 113.37 1.11 1.35 16 2 O -0.32 -6.87 10.51 -92.58 -0.97 -7.85 16 3 C 0.06 1.53 6.71 22.60 0.15 1.68 16 4 C -0.12 -2.28 10.13 22.56 0.23 -2.05 16 5 C -0.12 -2.13 9.71 22.35 0.22 -1.91 16 6 C 0.08 2.05 5.77 42.56 0.25 2.29 16 7 C -0.07 -1.41 4.50 29.10 0.13 -1.28 16 8 C 0.50 15.59 7.54 87.66 0.66 16.25 16 9 O -0.56 -24.69 10.73 -3.05 -0.03 -24.72 16 10 N -0.61 -16.93 2.97 -794.23 -2.36 -19.29 16 11 C 0.10 1.53 6.32 86.36 0.55 2.08 16 12 C -0.13 -2.04 6.08 30.67 0.19 -1.85 16 13 C -0.11 -2.57 5.88 30.62 0.18 -2.39 16 14 C -0.12 -4.07 5.17 30.82 0.16 -3.91 16 15 C 0.15 5.60 3.03 45.12 0.14 5.73 16 16 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 17 C 0.18 9.15 4.10 86.38 0.35 9.50 16 18 N -0.75 -43.36 5.29 -343.45 -1.82 -45.18 16 19 C -0.24 -15.59 9.99 84.03 0.84 -14.75 16 20 H 0.06 3.64 7.83 -2.91 -0.02 3.62 16 21 C -0.07 -4.37 5.50 84.86 0.47 -3.90 16 22 N -0.97 -62.23 13.06 21.65 0.28 -61.95 16 23 Si 0.97 50.00 29.55 68.60 2.03 52.02 16 24 H -0.28 -14.04 7.11 99.48 0.71 -13.34 16 25 H -0.28 -14.14 7.11 99.48 0.71 -13.44 16 26 H -0.28 -14.09 7.11 99.48 0.71 -13.38 16 27 N -0.46 -14.57 9.20 -183.49 -1.69 -16.26 16 28 C 0.00 0.06 10.22 84.80 0.87 0.93 16 29 H 0.13 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.07 0.85 7.68 -2.39 -0.02 0.83 16 31 H 0.05 0.86 7.68 -2.39 -0.02 0.84 16 32 H 0.17 2.30 8.06 -2.91 -0.02 2.27 16 33 H 0.18 1.66 7.95 -2.91 -0.02 1.63 16 34 H 0.13 1.82 7.48 -2.39 -0.02 1.80 16 35 H 0.15 1.42 7.83 -2.39 -0.02 1.40 16 36 H 0.12 0.94 5.96 -2.38 -0.01 0.93 16 37 H 0.09 1.06 8.14 -2.39 -0.02 1.05 16 38 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.07 1.51 8.14 -2.39 -0.02 1.50 16 42 H 0.04 1.59 8.14 -2.38 -0.02 1.58 16 43 H 0.05 2.08 7.31 -2.39 -0.02 2.07 16 44 H 0.02 0.96 6.34 -2.39 -0.02 0.95 16 45 H 0.00 0.22 7.13 -2.39 -0.02 0.20 16 46 H 0.37 21.99 6.90 -92.71 -0.64 21.35 16 47 H 0.25 15.65 8.31 -92.71 -0.77 14.88 16 48 H 0.16 3.91 6.32 -2.91 -0.02 3.90 16 Total: -1.00 -89.93 381.01 2.26 -87.67 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: 0.33 Total: 27.77 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 6.48 Total: 7.78 kcal Atomic # 7 Polarization: -137.10 SS G_CDS: -5.58 Total: -142.68 kcal Atomic # 8 Polarization: -31.56 SS G_CDS: -1.01 Total: -32.56 kcal Atomic # 14 Polarization: 50.00 SS G_CDS: 2.03 Total: 52.02 kcal Total: -89.93 2.26 -87.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690477113.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.219 kcal (2) G-P(sol) polarization free energy of solvation -89.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds