Wall clock time and date at job start Tue Mar 31 2020 17:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36933 * 119.99608 * 2 1 4 4 H 1.08005 * 119.99755 * 154.64068 * 3 2 1 5 5 C 1.38815 * 120.00292 * 334.63712 * 3 2 1 6 6 N 1.31622 * 119.99508 * 4.00743 * 5 3 2 7 7 Si 1.86797 * 120.00036 * 184.00458 * 5 3 2 8 8 H 1.48506 * 109.47095 * 90.00165 * 7 5 3 9 9 H 1.48502 * 109.47024 * 209.99822 * 7 5 3 10 10 H 1.48499 * 109.47257 * 330.00226 * 7 5 3 11 11 C 1.46498 * 119.99940 * 180.02562 * 2 1 3 12 12 H 1.09004 * 109.49782 * 180.02562 * 11 2 1 13 13 C 1.53049 * 109.49816 * 300.06202 * 11 2 1 14 14 C 1.53032 * 109.53522 * 181.31851 * 13 11 2 15 15 C 1.53191 * 109.31456 * 298.63538 * 14 13 11 16 16 N 1.46920 * 108.77542 * 54.63964 * 15 14 13 17 17 C 1.34779 * 120.63419 * 126.43469 * 16 15 14 18 18 O 1.21277 * 120.00236 * 179.97438 * 17 16 15 19 19 C 1.50707 * 119.99764 * 359.97438 * 17 16 15 20 20 O 1.42896 * 109.46785 * 180.02562 * 19 17 16 21 21 C 1.42904 * 113.99457 * 179.97438 * 20 19 17 22 22 C 1.50704 * 109.47039 * 179.97438 * 21 20 19 23 23 C 1.38646 * 120.78768 * 269.72696 * 22 21 20 24 24 C 1.38215 * 119.16051 * 179.75673 * 23 22 21 25 25 N 1.31869 * 120.75818 * 0.52269 * 24 23 22 26 26 C 1.31867 * 121.72889 * 359.75023 * 25 24 23 27 27 C 1.38203 * 120.76571 * 359.97200 * 26 25 24 28 28 C 1.46939 * 118.76461 * 306.40849 * 16 15 14 29 29 H 1.08996 * 109.47202 * 84.48035 * 1 2 3 30 30 H 1.09004 * 109.47030 * 204.47755 * 1 2 3 31 31 H 1.08997 * 109.47686 * 324.47135 * 1 2 3 32 32 H 0.97005 * 119.99235 * 180.02562 * 6 5 3 33 33 H 1.08999 * 109.45938 * 301.33888 * 13 11 2 34 34 H 1.08995 * 109.45771 * 61.29512 * 13 11 2 35 35 H 1.09000 * 109.50299 * 58.59024 * 14 13 11 36 36 H 1.09000 * 109.49875 * 178.68104 * 14 13 11 37 37 H 1.09003 * 109.58469 * 174.42442 * 15 14 13 38 38 H 1.08996 * 109.58393 * 294.84692 * 15 14 13 39 39 H 1.09003 * 109.46915 * 300.00199 * 19 17 16 40 40 H 1.08997 * 109.47222 * 59.99912 * 19 17 16 41 41 H 1.08998 * 109.47387 * 299.99979 * 21 20 19 42 42 H 1.09008 * 109.46992 * 60.00743 * 21 20 19 43 43 H 1.08003 * 120.42483 * 359.97438 * 23 22 21 44 44 H 1.07998 * 119.61947 * 180.29731 * 24 23 22 45 45 H 1.08002 * 119.61527 * 179.97438 * 26 25 24 46 46 H 1.07995 * 120.41715 * 180.02562 * 27 26 25 47 47 H 1.08993 * 109.55988 * 293.79244 * 28 16 15 48 48 H 1.08992 * 109.61426 * 173.35708 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1516 1.2310 0.4006 5 6 1.5559 2.3302 -0.5149 6 7 0.3075 2.2936 -0.9306 7 14 2.5285 3.9216 -0.6178 8 1 3.2237 3.9930 -1.9281 9 1 1.6040 5.0762 -0.4844 10 1 3.5308 3.9609 0.4771 11 6 2.1975 -1.2687 -0.0006 12 1 3.2693 -1.0700 0.0000 13 6 1.8270 -2.0730 1.2477 14 6 2.6164 -3.3840 1.2647 15 6 2.2497 -4.2123 0.0294 16 7 2.4666 -3.3930 -1.1708 17 6 3.2376 -3.8439 -2.1800 18 8 3.4086 -3.1583 -3.1656 19 6 3.8875 -5.2003 -2.0837 20 8 4.6479 -5.4492 -3.2676 21 6 5.3091 -6.7160 -3.2780 22 6 6.0761 -6.8718 -4.5659 23 6 5.4830 -7.4451 -5.6802 24 6 6.2159 -7.5668 -6.8457 25 7 7.4673 -7.1546 -6.9016 26 6 8.0651 -6.6098 -5.8601 27 6 7.3934 -6.4503 -4.6628 28 6 1.8266 -2.0727 -1.2507 29 1 -0.3633 0.0988 -1.0228 30 1 -0.3633 -0.9353 0.4258 31 1 -0.3634 0.8363 0.5971 32 1 -0.1072 3.0931 -1.2908 33 1 2.0677 -1.4926 2.1384 34 1 0.7594 -2.2921 1.2349 35 1 3.6843 -3.1659 1.2526 36 1 2.3696 -3.9456 2.1657 37 1 2.8803 -5.1002 -0.0155 38 1 1.2021 -4.5080 0.0856 39 1 4.5471 -5.2264 -1.2163 40 1 3.1181 -5.9651 -1.9781 41 1 5.9980 -6.7733 -2.4353 42 1 4.5694 -7.5126 -3.1976 43 1 4.4600 -7.7890 -5.6393 44 1 5.7597 -8.0079 -7.7196 45 1 9.0916 -6.2845 -5.9437 46 1 7.8884 -6.0031 -3.8136 47 1 0.7446 -2.1940 -1.2994 48 1 2.1782 -1.5489 -2.1395 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690822281.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:19 Heat of formation + Delta-G solvation = -9.321820 kcal Electronic energy + Delta-G solvation = -28321.036927 eV Core-core repulsion = 24377.323542 eV Total energy + Delta-G solvation = -3943.713385 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.49732 -40.01883 -38.16119 -37.10088 -35.11072 -33.52832 -32.41875 -31.51248 -31.32487 -29.54843 -28.15407 -26.58077 -26.01183 -24.72284 -23.77806 -23.37042 -22.34228 -21.70977 -19.78354 -18.66286 -17.69218 -17.01232 -16.94044 -16.78850 -16.48226 -16.04814 -15.89176 -15.43878 -15.01340 -14.55761 -14.18411 -14.13524 -14.05072 -13.95697 -13.68417 -13.58680 -12.99159 -12.92885 -12.64107 -12.40597 -12.25355 -12.05512 -11.84597 -11.81709 -11.22767 -11.02233 -10.80250 -10.66098 -10.37662 -10.32253 -10.19395 -10.10216 -10.06809 -9.88281 -9.79349 -9.77268 -9.48785 -9.44295 -8.55472 -8.35284 -6.74316 -5.73620 -3.20680 0.81290 0.84393 2.73539 2.78282 3.39854 3.44844 3.46793 3.46926 3.81088 4.17327 4.31905 4.34660 4.48576 4.60443 4.70507 4.76777 4.79996 4.89184 4.92701 4.97385 5.01828 5.09148 5.24398 5.30448 5.40126 5.47304 5.51686 5.53446 5.63067 5.70523 5.87909 5.96157 5.97445 6.08780 6.20052 6.34644 6.37565 6.45934 6.58533 6.74001 6.78993 6.93202 6.97240 7.48444 7.60118 7.66269 7.76554 7.85204 8.35876 8.42834 9.25540 9.85701 10.34950 11.30727 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014822 B = 0.002337 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.633650 B =11979.152191 C =13122.352061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.595 5.595 3 C -0.256 4.256 4 H 0.068 0.932 5 C 0.006 3.994 6 N -0.908 5.908 7 Si 0.905 3.095 8 H -0.286 1.286 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.169 3.831 12 H 0.064 0.936 13 C -0.134 4.134 14 C -0.131 4.131 15 C 0.107 3.893 16 N -0.606 5.606 17 C 0.510 3.490 18 O -0.519 6.519 19 C 0.046 3.954 20 O -0.354 6.354 21 C 0.099 3.901 22 C -0.044 4.044 23 C -0.151 4.151 24 C 0.095 3.905 25 N -0.483 5.483 26 C 0.096 3.904 27 C -0.150 4.150 28 C 0.100 3.900 29 H 0.025 0.975 30 H -0.007 1.007 31 H 0.053 0.947 32 H 0.253 0.747 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.137 0.863 44 H 0.158 0.842 45 H 0.158 0.842 46 H 0.137 0.863 47 H 0.062 0.938 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.330 -24.077 -0.116 25.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.317 5.317 3 C -0.385 4.385 4 H 0.086 0.914 5 C -0.192 4.192 6 N -0.552 5.552 7 Si 0.735 3.265 8 H -0.213 1.213 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.059 3.941 12 H 0.083 0.917 13 C -0.174 4.174 14 C -0.170 4.170 15 C -0.016 4.016 16 N -0.342 5.342 17 C 0.296 3.704 18 O -0.393 6.393 19 C -0.034 4.034 20 O -0.272 6.272 21 C 0.022 3.978 22 C -0.052 4.052 23 C -0.170 4.170 24 C -0.061 4.061 25 N -0.192 5.192 26 C -0.061 4.061 27 C -0.170 4.170 28 C -0.023 4.023 29 H 0.043 0.957 30 H 0.012 0.988 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.154 0.846 44 H 0.175 0.825 45 H 0.175 0.825 46 H 0.155 0.845 47 H 0.081 0.919 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.763 -23.474 -1.650 25.110 hybrid contribution -0.164 0.812 0.992 1.293 sum 8.599 -22.662 -0.657 24.247 Atomic orbital electron populations 1.20872 0.82324 0.95389 0.99348 1.43914 1.01987 0.99946 1.85859 1.19209 0.99265 0.86127 1.33942 0.91384 1.25178 0.96572 0.98869 0.98556 1.70085 1.11211 1.28068 1.45884 0.86252 0.79240 0.82986 0.78067 1.21267 1.21685 1.20544 1.20631 0.96496 0.86258 0.90680 0.91747 1.22100 0.99697 0.94902 1.00677 1.21909 1.01103 0.97382 0.96625 1.21757 1.01405 0.93314 0.85148 1.48255 1.49238 1.19374 1.17346 1.20092 0.79491 0.87511 0.83342 1.90752 1.60165 1.57769 1.30644 1.22318 0.95808 0.96243 0.89022 1.88118 1.65736 1.34861 1.38525 1.21361 0.95255 0.86720 0.94436 1.19964 0.94003 0.96128 0.95151 1.22099 1.01277 1.00189 0.93479 1.22785 0.90011 0.96069 0.97263 1.67667 1.11069 1.09577 1.30920 1.22790 1.00193 0.94853 0.88252 1.22108 0.94981 0.99881 1.00008 1.22566 0.96682 0.80598 1.02477 0.95697 0.98843 0.92838 0.93670 0.91660 0.92164 0.91708 0.91173 0.90708 0.91232 0.90224 0.90344 0.91671 0.91725 0.84556 0.82521 0.82492 0.84502 0.91947 0.89040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.01 7.88 59.85 0.47 4.48 16 2 N -0.60 -14.74 2.82 -173.34 -0.49 -15.23 16 3 C -0.26 -7.05 9.59 -15.06 -0.14 -7.20 16 4 H 0.07 1.84 7.81 -52.48 -0.41 1.43 16 5 C 0.01 0.18 5.38 -17.43 -0.09 0.09 16 6 N -0.91 -26.47 10.13 55.49 0.56 -25.91 16 7 Si 0.90 22.16 29.56 -169.99 -5.02 17.13 16 8 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 9 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 C 0.17 3.39 2.74 -67.81 -0.19 3.21 16 12 H 0.06 1.37 7.88 -51.93 -0.41 0.97 16 13 C -0.13 -2.13 5.13 -26.69 -0.14 -2.26 16 14 C -0.13 -1.50 6.08 -26.62 -0.16 -1.66 16 15 C 0.11 1.13 6.34 -3.71 -0.02 1.11 16 16 N -0.61 -9.19 2.97 -172.77 -0.51 -9.70 16 17 C 0.51 8.23 7.77 -10.98 -0.09 8.14 16 18 O -0.52 -11.16 15.91 -14.35 -0.23 -11.39 16 19 C 0.05 0.50 4.76 36.01 0.17 0.67 16 20 O -0.35 -4.55 9.86 -55.14 -0.54 -5.10 16 21 C 0.10 0.83 6.11 36.01 0.22 1.05 16 22 C -0.04 -0.42 5.55 -104.32 -0.58 -1.00 16 23 C -0.15 -1.35 9.82 -39.44 -0.39 -1.73 16 24 C 0.10 0.89 11.18 -17.54 -0.20 0.69 16 25 N -0.48 -5.25 10.36 -13.25 -0.14 -5.39 16 26 C 0.10 0.90 11.18 -17.55 -0.20 0.70 16 27 C -0.15 -1.36 9.82 -39.44 -0.39 -1.75 16 28 C 0.10 1.92 5.79 -3.70 -0.02 1.90 16 29 H 0.02 0.66 7.44 -51.93 -0.39 0.27 16 30 H -0.01 -0.14 6.46 -51.93 -0.34 -0.48 16 31 H 0.05 1.42 7.04 -51.93 -0.37 1.05 16 32 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.06 0.96 6.71 -51.93 -0.35 0.61 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.54 5.93 -51.93 -0.31 0.23 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.65 7.69 -51.93 -0.40 0.25 16 40 H 0.08 0.62 7.94 -51.93 -0.41 0.20 16 41 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 42 H 0.06 0.40 8.10 -51.92 -0.42 -0.02 16 43 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 44 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 45 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 46 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 47 H 0.06 1.20 7.51 -51.93 -0.39 0.81 16 48 H 0.09 2.10 7.00 -51.93 -0.36 1.74 16 LS Contribution 386.80 15.07 5.83 5.83 Total: -1.00 -35.56 386.80 -9.77 -45.33 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -7.49 Total: -2.02 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: -1.74 Total: 6.43 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: -0.58 Total: -56.22 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.77 Total: -16.49 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.56 -9.77 -45.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690822281.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.008 kcal (2) G-P(sol) polarization free energy of solvation -35.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds