Wall clock time and date at job start Tue Mar 31 2020 17:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36933 * 119.99608 * 2 1 4 4 H 1.08005 * 119.99755 * 154.64068 * 3 2 1 5 5 C 1.38815 * 120.00292 * 334.63712 * 3 2 1 6 6 N 1.31622 * 119.99508 * 4.00743 * 5 3 2 7 7 Si 1.86797 * 120.00036 * 184.00458 * 5 3 2 8 8 H 1.48506 * 109.47095 * 90.00165 * 7 5 3 9 9 H 1.48502 * 109.47024 * 209.99822 * 7 5 3 10 10 H 1.48499 * 109.47257 * 330.00226 * 7 5 3 11 11 C 1.46498 * 119.99940 * 180.02562 * 2 1 3 12 12 H 1.09004 * 109.49782 * 180.02562 * 11 2 1 13 13 C 1.53049 * 109.49816 * 300.06202 * 11 2 1 14 14 C 1.53032 * 109.53522 * 181.31851 * 13 11 2 15 15 C 1.53191 * 109.31456 * 298.63538 * 14 13 11 16 16 N 1.46920 * 108.77542 * 54.63964 * 15 14 13 17 17 C 1.34779 * 120.63419 * 126.43469 * 16 15 14 18 18 O 1.21277 * 120.00236 * 179.97438 * 17 16 15 19 19 C 1.50707 * 119.99764 * 359.97438 * 17 16 15 20 20 O 1.42896 * 109.46785 * 180.02562 * 19 17 16 21 21 C 1.42904 * 113.99457 * 179.97438 * 20 19 17 22 22 C 1.50704 * 109.47039 * 179.97438 * 21 20 19 23 23 C 1.38646 * 120.78768 * 269.72696 * 22 21 20 24 24 C 1.38215 * 119.16051 * 179.75673 * 23 22 21 25 25 N 1.31869 * 120.75818 * 0.52269 * 24 23 22 26 26 C 1.31867 * 121.72889 * 359.75023 * 25 24 23 27 27 C 1.38203 * 120.76571 * 359.97200 * 26 25 24 28 28 C 1.46939 * 118.76461 * 306.40849 * 16 15 14 29 29 H 1.08996 * 109.47202 * 84.48035 * 1 2 3 30 30 H 1.09004 * 109.47030 * 204.47755 * 1 2 3 31 31 H 1.08997 * 109.47686 * 324.47135 * 1 2 3 32 32 H 0.97005 * 119.99235 * 180.02562 * 6 5 3 33 33 H 1.08999 * 109.45938 * 301.33888 * 13 11 2 34 34 H 1.08995 * 109.45771 * 61.29512 * 13 11 2 35 35 H 1.09000 * 109.50299 * 58.59024 * 14 13 11 36 36 H 1.09000 * 109.49875 * 178.68104 * 14 13 11 37 37 H 1.09003 * 109.58469 * 174.42442 * 15 14 13 38 38 H 1.08996 * 109.58393 * 294.84692 * 15 14 13 39 39 H 1.09003 * 109.46915 * 300.00199 * 19 17 16 40 40 H 1.08997 * 109.47222 * 59.99912 * 19 17 16 41 41 H 1.08998 * 109.47387 * 299.99979 * 21 20 19 42 42 H 1.09008 * 109.46992 * 60.00743 * 21 20 19 43 43 H 1.08003 * 120.42483 * 359.97438 * 23 22 21 44 44 H 1.07998 * 119.61947 * 180.29731 * 24 23 22 45 45 H 1.08002 * 119.61527 * 179.97438 * 26 25 24 46 46 H 1.07995 * 120.41715 * 180.02562 * 27 26 25 47 47 H 1.08993 * 109.55988 * 293.79244 * 28 16 15 48 48 H 1.08992 * 109.61426 * 173.35708 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1516 1.2310 0.4006 5 6 1.5559 2.3302 -0.5149 6 7 0.3075 2.2936 -0.9306 7 14 2.5285 3.9216 -0.6178 8 1 3.2237 3.9930 -1.9281 9 1 1.6040 5.0762 -0.4844 10 1 3.5308 3.9609 0.4771 11 6 2.1975 -1.2687 -0.0006 12 1 3.2693 -1.0700 0.0000 13 6 1.8270 -2.0730 1.2477 14 6 2.6164 -3.3840 1.2647 15 6 2.2497 -4.2123 0.0294 16 7 2.4666 -3.3930 -1.1708 17 6 3.2376 -3.8439 -2.1800 18 8 3.4086 -3.1583 -3.1656 19 6 3.8875 -5.2003 -2.0837 20 8 4.6479 -5.4492 -3.2676 21 6 5.3091 -6.7160 -3.2780 22 6 6.0761 -6.8718 -4.5659 23 6 5.4830 -7.4451 -5.6802 24 6 6.2159 -7.5668 -6.8457 25 7 7.4673 -7.1546 -6.9016 26 6 8.0651 -6.6098 -5.8601 27 6 7.3934 -6.4503 -4.6628 28 6 1.8266 -2.0727 -1.2507 29 1 -0.3633 0.0988 -1.0228 30 1 -0.3633 -0.9353 0.4258 31 1 -0.3634 0.8363 0.5971 32 1 -0.1072 3.0931 -1.2908 33 1 2.0677 -1.4926 2.1384 34 1 0.7594 -2.2921 1.2349 35 1 3.6843 -3.1659 1.2526 36 1 2.3696 -3.9456 2.1657 37 1 2.8803 -5.1002 -0.0155 38 1 1.2021 -4.5080 0.0856 39 1 4.5471 -5.2264 -1.2163 40 1 3.1181 -5.9651 -1.9781 41 1 5.9980 -6.7733 -2.4353 42 1 4.5694 -7.5126 -3.1976 43 1 4.4600 -7.7890 -5.6393 44 1 5.7597 -8.0079 -7.7196 45 1 9.0916 -6.2845 -5.9437 46 1 7.8884 -6.0031 -3.8136 47 1 0.7446 -2.1940 -1.2994 48 1 2.1782 -1.5489 -2.1395 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690822281.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:19 Heat of formation + Delta-G solvation = -32.700484 kcal Electronic energy + Delta-G solvation = -28322.050702 eV Core-core repulsion = 24377.323542 eV Total energy + Delta-G solvation = -3944.727160 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.33276 -41.05403 -39.23319 -38.31925 -36.78168 -34.26372 -33.98255 -32.81107 -32.15203 -30.99952 -29.24248 -28.08122 -27.37338 -25.90374 -25.04643 -24.42857 -23.05769 -22.97172 -21.22337 -19.94908 -18.86883 -18.55779 -17.75516 -17.70152 -17.45083 -17.05630 -16.84018 -16.55824 -16.45879 -15.72707 -15.68591 -15.23072 -15.12891 -15.00709 -14.73813 -14.56215 -14.40940 -14.10888 -13.98979 -13.79654 -13.45880 -13.19516 -13.00648 -12.78699 -12.73981 -12.49594 -12.45503 -12.18719 -12.13741 -12.08667 -11.74319 -11.64848 -11.37499 -10.89484 -10.74929 -10.65841 -10.64989 -10.47471 -10.09570 -9.70712 -8.75129 -7.87640 -5.36038 0.13481 0.19170 1.41057 1.44839 1.51772 1.56858 1.74529 2.46125 2.67760 3.08991 3.27618 3.48740 3.58753 3.63806 3.79427 3.82749 3.99479 4.07342 4.10710 4.13098 4.20081 4.22571 4.26431 4.29020 4.38735 4.44465 4.46833 4.62880 4.70195 4.71655 4.81236 4.87935 4.89516 4.95762 4.98548 5.06585 5.18160 5.33123 5.33924 5.43351 5.48469 5.58489 5.61329 5.75097 5.77047 6.01987 6.32069 6.46856 6.99362 7.13683 7.17981 7.84817 8.27367 9.15041 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014822 B = 0.002337 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.633650 B =11979.152191 C =13122.352061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.184 3.816 2 N -0.614 5.614 3 C -0.265 4.265 4 H 0.067 0.933 5 C -0.051 4.051 6 N -0.936 5.936 7 Si 0.967 3.033 8 H -0.291 1.291 9 H -0.290 1.290 10 H -0.266 1.266 11 C 0.167 3.833 12 H 0.044 0.956 13 C -0.125 4.125 14 C -0.123 4.123 15 C 0.100 3.900 16 N -0.603 5.603 17 C 0.498 3.502 18 O -0.589 6.589 19 C 0.056 3.944 20 O -0.396 6.396 21 C 0.098 3.902 22 C -0.062 4.062 23 C -0.157 4.157 24 C 0.081 3.919 25 N -0.512 5.512 26 C 0.081 3.919 27 C -0.158 4.158 28 C 0.115 3.885 29 H -0.007 1.007 30 H 0.031 0.969 31 H 0.025 0.975 32 H 0.248 0.752 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.111 0.889 37 H 0.125 0.875 38 H 0.087 0.913 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.156 0.844 44 H 0.177 0.823 45 H 0.176 0.824 46 H 0.153 0.847 47 H 0.059 0.941 48 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.076 -27.397 2.144 28.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.337 5.337 3 C -0.395 4.395 4 H 0.085 0.915 5 C -0.246 4.246 6 N -0.583 5.583 7 Si 0.795 3.205 8 H -0.218 1.218 9 H -0.216 1.216 10 H -0.191 1.191 11 C 0.059 3.941 12 H 0.062 0.938 13 C -0.164 4.164 14 C -0.161 4.161 15 C -0.020 4.020 16 N -0.338 5.338 17 C 0.287 3.713 18 O -0.469 6.469 19 C -0.023 4.023 20 O -0.316 6.316 21 C 0.023 3.977 22 C -0.071 4.071 23 C -0.176 4.176 24 C -0.075 4.075 25 N -0.222 5.222 26 C -0.075 4.075 27 C -0.178 4.178 28 C -0.010 4.010 29 H 0.011 0.989 30 H 0.049 0.951 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.129 0.871 37 H 0.143 0.857 38 H 0.106 0.894 39 H 0.135 0.865 40 H 0.139 0.861 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.173 0.827 44 H 0.194 0.806 45 H 0.193 0.807 46 H 0.171 0.829 47 H 0.078 0.922 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 9.529 -26.867 0.670 28.515 hybrid contribution -0.364 1.773 0.287 1.833 sum 9.166 -25.094 0.957 26.733 Atomic orbital electron populations 1.20527 0.82391 0.95987 0.97121 1.44145 1.02286 1.01023 1.86242 1.19518 0.99246 0.87538 1.33201 0.91473 1.25927 0.97543 1.02079 0.99023 1.70262 1.12439 1.28459 1.47152 0.85271 0.78050 0.79301 0.77884 1.21843 1.21586 1.19106 1.20801 0.94824 0.85211 0.93261 0.93788 1.21944 1.00689 0.96600 0.97149 1.21902 1.00210 0.95116 0.98917 1.22211 1.03840 0.93805 0.82184 1.48297 1.48410 1.17968 1.19107 1.21269 0.78632 0.89250 0.82108 1.90723 1.62548 1.60184 1.33462 1.22393 0.97220 0.92993 0.89691 1.88064 1.66549 1.37240 1.39723 1.21583 0.96099 0.85632 0.94428 1.20337 0.94412 0.96140 0.96167 1.22381 1.02115 0.99903 0.93234 1.23200 0.89833 0.96090 0.98388 1.67677 1.12060 1.10626 1.31865 1.23177 1.01196 0.94830 0.88323 1.22375 0.95270 0.99720 1.00414 1.21948 0.96455 0.82963 0.99644 0.98869 0.95114 0.95668 0.94245 0.92719 0.91814 0.91727 0.87076 0.85711 0.89430 0.86457 0.86143 0.89237 0.89038 0.82668 0.80610 0.80729 0.82881 0.92246 0.94224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.23 7.88 127.77 1.01 10.24 16 2 N -0.61 -31.34 2.82 -702.33 -1.98 -33.33 16 3 C -0.26 -15.06 9.59 84.03 0.81 -14.25 16 4 H 0.07 3.73 7.81 -2.91 -0.02 3.71 16 5 C -0.05 -2.95 5.38 84.86 0.46 -2.49 16 6 N -0.94 -56.88 10.13 21.65 0.22 -56.66 16 7 Si 0.97 46.83 29.56 68.60 2.03 48.86 16 8 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 9 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 11 C 0.17 6.77 2.74 45.07 0.12 6.90 16 12 H 0.04 1.93 7.88 -2.38 -0.02 1.91 16 13 C -0.12 -3.67 5.13 30.62 0.16 -3.52 16 14 C -0.12 -2.22 6.08 30.67 0.19 -2.04 16 15 C 0.10 1.60 6.34 86.36 0.55 2.14 16 16 N -0.60 -17.16 2.97 -818.91 -2.43 -19.60 16 17 C 0.50 15.41 7.77 87.66 0.68 16.09 16 18 O -0.59 -26.32 15.91 16.02 0.25 -26.06 16 19 C 0.06 0.97 4.76 71.24 0.34 1.30 16 20 O -0.40 -9.10 9.86 -129.94 -1.28 -10.38 16 21 C 0.10 1.29 6.11 71.24 0.44 1.73 16 22 C -0.06 -1.07 5.55 -19.67 -0.11 -1.18 16 23 C -0.16 -2.58 9.82 22.36 0.22 -2.36 16 24 C 0.08 1.46 11.18 84.68 0.95 2.41 16 25 N -0.51 -11.06 10.36 -195.84 -2.03 -13.09 16 26 C 0.08 1.49 11.18 84.68 0.95 2.43 16 27 C -0.16 -2.69 9.82 22.36 0.22 -2.47 16 28 C 0.12 4.53 5.79 86.36 0.50 5.03 16 29 H -0.01 -0.40 7.44 -2.39 -0.02 -0.41 16 30 H 0.03 1.28 6.46 -2.38 -0.02 1.26 16 31 H 0.02 1.37 7.04 -2.39 -0.02 1.35 16 32 H 0.25 14.65 8.31 -92.70 -0.77 13.88 16 33 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.06 1.84 6.71 -2.39 -0.02 1.82 16 35 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.12 0.84 5.93 -2.39 -0.01 0.83 16 38 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.12 1.17 7.69 -2.39 -0.02 1.15 16 40 H 0.12 1.10 7.94 -2.39 -0.02 1.08 16 41 H 0.09 0.72 8.10 -2.39 -0.02 0.70 16 42 H 0.09 0.69 8.10 -2.38 -0.02 0.67 16 43 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 44 H 0.18 2.17 8.06 -2.91 -0.02 2.15 16 45 H 0.18 2.27 8.06 -2.91 -0.02 2.24 16 46 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 47 H 0.06 2.33 7.51 -2.39 -0.02 2.32 16 48 H 0.04 1.95 7.00 -2.39 -0.02 1.94 16 Total: -1.00 -86.05 386.80 3.18 -82.87 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: 0.95 Total: 7.43 kcal Atomic # 6 Polarization: 12.50 SS G_CDS: 7.46 Total: 19.96 kcal Atomic # 7 Polarization: -116.45 SS G_CDS: -6.23 Total: -122.68 kcal Atomic # 8 Polarization: -35.42 SS G_CDS: -1.03 Total: -36.44 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -86.05 3.18 -82.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690822281.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.165 kcal (2) G-P(sol) polarization free energy of solvation -86.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds