Wall clock time and date at job start Tue Mar 31 2020 17:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35677 * 116.99624 * 2 1 4 4 C 1.38929 * 119.68181 * 179.97438 * 3 2 1 5 5 C 1.38383 * 119.10881 * 179.97438 * 4 3 2 6 6 C 1.38829 * 118.48663 * 0.02562 * 5 4 3 7 7 C 1.50695 * 120.35315 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.46755 * 90.00409 * 7 6 5 9 9 C 1.50705 * 109.46884 * 180.02562 * 8 7 6 10 10 O 1.21273 * 119.99998 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99777 * 180.02562 * 9 8 7 12 12 C 1.46505 * 120.00167 * 359.97438 * 11 9 8 13 13 C 1.46502 * 119.99991 * 180.02562 * 11 9 8 14 14 H 1.09001 * 110.91352 * 3.89505 * 13 11 9 15 15 C 1.55162 * 111.00126 * 239.99692 * 13 11 9 16 16 C 1.54322 * 102.94027 * 206.42059 * 15 13 11 17 17 N 1.47021 * 107.27114 * 22.19464 * 16 15 13 18 18 C 1.36939 * 125.65020 * 180.79294 * 17 16 15 19 19 H 1.07993 * 120.00037 * 174.02304 * 18 17 16 20 20 C 1.38818 * 119.99487 * 354.02227 * 18 17 16 21 21 N 1.31614 * 120.00293 * 6.87900 * 20 18 17 22 22 Si 1.86798 * 119.99584 * 186.87919 * 20 18 17 23 23 H 1.48507 * 109.47032 * 94.98523 * 22 20 18 24 24 H 1.48499 * 109.47306 * 214.98527 * 22 20 18 25 25 H 1.48502 * 109.47533 * 334.99048 * 22 20 18 26 26 C 1.47428 * 108.70438 * 1.05667 * 17 16 15 27 27 C 1.38046 * 119.28936 * 0.25195 * 6 5 4 28 28 N 1.31970 * 120.83215 * 359.45638 * 27 6 5 29 29 H 1.09006 * 109.46857 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47272 * 299.99889 * 1 2 3 31 31 H 1.08999 * 109.47394 * 60.00387 * 1 2 3 32 32 H 1.07997 * 120.44607 * 0.02562 * 4 3 2 33 33 H 1.08001 * 120.75421 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.47591 * 330.00547 * 7 6 5 35 35 H 1.09005 * 109.47247 * 210.00126 * 7 6 5 36 36 H 1.09000 * 109.47344 * 60.00117 * 8 7 6 37 37 H 1.08995 * 109.47527 * 299.99725 * 8 7 6 38 38 H 1.08997 * 109.47011 * 270.00485 * 12 11 9 39 39 H 1.08996 * 109.46649 * 29.99886 * 12 11 9 40 40 H 1.08991 * 109.47194 * 150.00139 * 12 11 9 41 41 H 1.09000 * 110.71739 * 88.05917 * 15 13 11 42 42 H 1.09001 * 110.72194 * 324.78471 * 15 13 11 43 43 H 1.09001 * 109.88364 * 262.77461 * 16 15 13 44 44 H 1.09004 * 109.87812 * 141.60984 * 16 15 13 45 45 H 0.96993 * 119.99943 * 179.97438 * 21 20 18 46 46 H 1.09005 * 110.36351 * 94.71150 * 26 17 16 47 47 H 1.08991 * 110.36864 * 217.03292 * 26 17 16 48 48 H 1.08002 * 119.58252 * 179.72390 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2089 0.0000 4 6 3.4326 1.2740 0.0005 5 6 4.0484 2.5133 0.0000 6 6 3.2503 3.6493 -0.0005 7 6 3.8766 5.0199 -0.0006 8 6 4.0890 5.4835 -1.4431 9 6 4.7159 6.8539 -1.4432 10 8 4.9675 7.4057 -0.3930 11 7 4.9959 7.4668 -2.6105 12 6 4.6914 6.8005 -3.8792 13 6 5.6058 8.7988 -2.6106 14 1 5.8312 9.1237 -1.5948 15 6 4.6965 9.8268 -3.3344 16 6 5.7017 10.8857 -3.8342 17 7 7.0196 10.2379 -3.9038 18 6 8.1868 10.8424 -4.2880 19 1 9.1218 10.3072 -4.2140 20 6 8.1678 12.1431 -4.7726 21 7 7.0535 12.8425 -4.7369 22 14 9.7240 12.9006 -5.4753 23 1 9.7362 12.7279 -6.9502 24 1 9.7622 14.3481 -5.1461 25 1 10.9108 12.2279 -4.8884 26 6 6.8755 8.8280 -3.4975 27 6 1.8769 3.5097 0.0048 28 7 1.3185 2.3140 -0.0004 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 4.0229 0.3696 0.0005 33 1 5.1253 2.5948 0.0000 34 1 4.8369 4.9807 0.5136 35 1 3.2179 5.7204 0.5129 36 1 3.1287 5.5228 -1.9573 37 1 4.7476 4.7831 -1.9566 38 1 5.5505 6.2081 -4.1938 39 1 3.8283 6.1478 -3.7487 40 1 4.4689 7.5497 -4.6388 41 1 3.9845 10.2694 -2.6378 42 1 4.1786 9.3606 -4.1726 43 1 5.7362 11.7225 -3.1365 44 1 5.4086 11.2370 -4.8236 45 1 7.0404 13.7515 -5.0751 46 1 6.7414 8.1928 -4.3731 47 1 7.7457 8.5074 -2.9248 48 1 1.2516 4.3903 0.0089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698567033.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:59 Heat of formation + Delta-G solvation = -8.422702 kcal Electronic energy + Delta-G solvation = -27828.619327 eV Core-core repulsion = 23884.944930 eV Total energy + Delta-G solvation = -3943.674397 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.00929 -39.93513 -38.41648 -37.39426 -34.81503 -34.41056 -32.57003 -32.12886 -30.12782 -29.16005 -27.83008 -27.41708 -26.62965 -25.10198 -24.15179 -23.73520 -21.95172 -20.32990 -20.13152 -18.75103 -18.72492 -17.48714 -17.25983 -16.97446 -16.35466 -15.96612 -15.72320 -15.18687 -14.83397 -14.66958 -14.63641 -14.19612 -13.97979 -13.70656 -13.58010 -13.41058 -12.90535 -12.78612 -12.56302 -12.41568 -12.31663 -12.25626 -12.01024 -11.83498 -11.74643 -11.41185 -11.30512 -10.96434 -10.85574 -10.78245 -10.30639 -10.21726 -10.10157 -9.95574 -9.87458 -9.70363 -9.58793 -8.70173 -8.62995 -8.35596 -6.85498 -5.74267 -3.07524 0.79311 0.91372 2.73751 2.74321 3.11169 3.39539 3.42490 3.45153 3.47040 3.96944 4.33717 4.49629 4.58154 4.62163 4.68876 4.84909 4.91608 4.94542 4.94666 4.99362 5.14498 5.25711 5.31250 5.32172 5.37666 5.42119 5.52690 5.56948 5.62041 5.66417 5.70977 5.73301 5.87704 5.88981 6.04829 6.11380 6.19592 6.28272 6.48056 6.56403 6.68876 6.86758 6.94376 7.49609 7.52219 7.58802 7.59856 7.80234 8.22367 8.31647 9.19170 9.79373 10.44890 11.37707 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.036680 B = 0.001790 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.185046 B =15640.596348 C =15779.702719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.311 6.311 3 C 0.311 3.689 4 C -0.187 4.187 5 C -0.037 4.037 6 C -0.167 4.167 7 C -0.056 4.056 8 C -0.133 4.133 9 C 0.510 3.490 10 O -0.544 6.544 11 N -0.602 5.602 12 C 0.075 3.925 13 C 0.122 3.878 14 H 0.106 0.894 15 C -0.153 4.153 16 C 0.179 3.821 17 N -0.603 5.603 18 C -0.230 4.230 19 H 0.078 0.922 20 C -0.006 4.006 21 N -0.919 5.919 22 Si 0.912 3.088 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.132 3.868 27 C 0.143 3.857 28 N -0.539 5.539 29 H 0.095 0.905 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.045 0.955 44 H 0.048 0.952 45 H 0.253 0.747 46 H 0.022 0.978 47 H 0.040 0.960 48 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.731 -24.121 7.189 28.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.218 6.218 3 C 0.133 3.867 4 C -0.208 4.208 5 C -0.062 4.062 6 C -0.170 4.170 7 C -0.095 4.095 8 C -0.173 4.173 9 C 0.298 3.702 10 O -0.422 6.422 11 N -0.334 5.334 12 C -0.068 4.068 13 C 0.018 3.982 14 H 0.124 0.876 15 C -0.192 4.192 16 C 0.054 3.946 17 N -0.330 5.330 18 C -0.358 4.358 19 H 0.096 0.904 20 C -0.203 4.203 21 N -0.567 5.567 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.206 1.206 26 C 0.005 3.995 27 C -0.013 4.013 28 N -0.262 5.262 29 H 0.113 0.887 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.159 0.841 33 H 0.161 0.839 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.040 0.960 47 H 0.058 0.942 48 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -13.340 -23.968 7.655 28.478 hybrid contribution 1.362 0.589 -0.624 1.609 sum -11.978 -23.380 7.031 27.194 Atomic orbital electron populations 1.22851 0.77206 1.02897 1.02508 1.86231 1.22952 1.24669 1.87927 1.19868 0.89474 0.84711 0.92677 1.21080 0.91987 0.99598 1.08103 1.21391 1.00723 0.90689 0.93426 1.20791 0.94732 0.96536 1.04909 1.20203 1.02147 0.91348 0.95759 1.21698 1.02349 0.94536 0.98721 1.20594 0.78619 0.87456 0.83489 1.90696 1.53647 1.66856 1.30971 1.47847 1.61116 1.18493 1.05927 1.21787 1.00450 0.98061 0.86487 1.22453 0.93907 0.80268 1.01545 0.87605 1.23236 0.98735 0.97970 0.99247 1.21155 0.82163 0.91523 0.99803 1.44383 1.05315 1.04396 1.78884 1.19059 0.85074 0.96385 1.35329 0.90368 1.24831 0.97403 0.96787 1.01249 1.69969 1.25392 1.10079 1.51226 0.86102 0.82206 0.78448 0.79041 1.21610 1.21728 1.20599 1.21730 0.94440 0.88455 0.94915 1.22356 0.92322 0.93561 0.93024 1.67325 1.40931 0.98809 1.19114 0.88682 0.92314 0.92267 0.84121 0.83934 0.89838 0.89795 0.88902 0.88916 0.92450 0.91425 0.90331 0.91943 0.92131 0.93681 0.93379 0.93694 0.96045 0.94206 0.82304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.38 101.05 1.05 1.32 16 2 O -0.31 -2.91 10.48 -18.73 -0.20 -3.10 16 3 C 0.31 3.07 7.49 -17.12 -0.13 2.94 16 4 C -0.19 -1.54 10.04 -39.27 -0.39 -1.93 16 5 C -0.04 -0.28 9.85 -39.31 -0.39 -0.67 16 6 C -0.17 -1.36 5.15 -104.48 -0.54 -1.90 16 7 C -0.06 -0.49 4.66 -27.88 -0.13 -0.62 16 8 C -0.13 -1.20 4.23 -27.88 -0.12 -1.32 16 9 C 0.51 7.06 7.67 -10.98 -0.08 6.97 16 10 O -0.54 -9.64 15.36 5.56 0.09 -9.55 16 11 N -0.60 -8.59 2.91 -171.48 -0.50 -9.09 16 12 C 0.08 0.81 8.85 59.85 0.53 1.34 16 13 C 0.12 2.23 3.45 -65.78 -0.23 2.00 16 14 H 0.11 2.18 7.02 -51.93 -0.36 1.81 16 15 C -0.15 -2.85 6.51 -24.89 -0.16 -3.01 16 16 C 0.18 4.31 5.38 -3.07 -0.02 4.30 16 17 N -0.60 -15.38 3.39 -170.07 -0.58 -15.96 16 18 C -0.23 -6.43 10.26 -15.06 -0.15 -6.58 16 19 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 20 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 21 N -0.92 -26.93 10.36 55.49 0.58 -26.35 16 22 Si 0.91 22.05 29.56 -169.99 -5.02 17.02 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 C 0.13 2.73 6.79 -2.53 -0.02 2.71 16 27 C 0.14 1.24 10.85 -17.56 -0.19 1.05 16 28 N -0.54 -5.42 9.22 -13.33 -0.12 -5.54 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 31 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 32 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 33 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.08 0.79 8.05 -51.93 -0.42 0.37 16 35 H 0.08 0.78 8.05 -51.93 -0.42 0.36 16 36 H 0.09 0.69 7.40 -51.93 -0.38 0.31 16 37 H 0.09 0.71 8.11 -51.93 -0.42 0.29 16 38 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 39 H 0.07 0.53 6.44 -51.93 -0.33 0.19 16 40 H 0.08 0.91 6.42 -51.93 -0.33 0.58 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.06 1.02 6.40 -51.93 -0.33 0.69 16 43 H 0.04 1.21 7.55 -51.93 -0.39 0.82 16 44 H 0.05 1.27 7.36 -51.93 -0.38 0.89 16 45 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 46 H 0.02 0.43 7.00 -51.93 -0.36 0.06 16 47 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 48 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 388.50 15.07 5.85 5.85 Total: -1.00 -33.84 388.50 -8.46 -42.30 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -7.49 Total: -1.89 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: -1.06 Total: 6.31 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: -0.62 Total: -56.94 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.11 Total: -12.65 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.84 -8.46 -42.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698567033.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.875 kcal (2) G-P(sol) polarization free energy of solvation -33.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds