Wall clock time and date at job start Tue Mar 31 2020 17:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35677 * 116.99624 * 2 1 4 4 C 1.38929 * 119.68181 * 179.97438 * 3 2 1 5 5 C 1.38383 * 119.10881 * 179.97438 * 4 3 2 6 6 C 1.38829 * 118.48663 * 0.02562 * 5 4 3 7 7 C 1.50695 * 120.35315 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.46755 * 90.00409 * 7 6 5 9 9 C 1.50705 * 109.46884 * 180.02562 * 8 7 6 10 10 O 1.21273 * 119.99998 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99777 * 180.02562 * 9 8 7 12 12 C 1.46505 * 120.00167 * 359.97438 * 11 9 8 13 13 C 1.46502 * 119.99991 * 180.02562 * 11 9 8 14 14 H 1.09001 * 110.91352 * 3.89505 * 13 11 9 15 15 C 1.55162 * 111.00126 * 239.99692 * 13 11 9 16 16 C 1.54322 * 102.94027 * 206.42059 * 15 13 11 17 17 N 1.47021 * 107.27114 * 22.19464 * 16 15 13 18 18 C 1.36939 * 125.65020 * 180.79294 * 17 16 15 19 19 H 1.07993 * 120.00037 * 174.02304 * 18 17 16 20 20 C 1.38818 * 119.99487 * 354.02227 * 18 17 16 21 21 N 1.31614 * 120.00293 * 6.87900 * 20 18 17 22 22 Si 1.86798 * 119.99584 * 186.87919 * 20 18 17 23 23 H 1.48507 * 109.47032 * 94.98523 * 22 20 18 24 24 H 1.48499 * 109.47306 * 214.98527 * 22 20 18 25 25 H 1.48502 * 109.47533 * 334.99048 * 22 20 18 26 26 C 1.47428 * 108.70438 * 1.05667 * 17 16 15 27 27 C 1.38046 * 119.28936 * 0.25195 * 6 5 4 28 28 N 1.31970 * 120.83215 * 359.45638 * 27 6 5 29 29 H 1.09006 * 109.46857 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47272 * 299.99889 * 1 2 3 31 31 H 1.08999 * 109.47394 * 60.00387 * 1 2 3 32 32 H 1.07997 * 120.44607 * 0.02562 * 4 3 2 33 33 H 1.08001 * 120.75421 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.47591 * 330.00547 * 7 6 5 35 35 H 1.09005 * 109.47247 * 210.00126 * 7 6 5 36 36 H 1.09000 * 109.47344 * 60.00117 * 8 7 6 37 37 H 1.08995 * 109.47527 * 299.99725 * 8 7 6 38 38 H 1.08997 * 109.47011 * 270.00485 * 12 11 9 39 39 H 1.08996 * 109.46649 * 29.99886 * 12 11 9 40 40 H 1.08991 * 109.47194 * 150.00139 * 12 11 9 41 41 H 1.09000 * 110.71739 * 88.05917 * 15 13 11 42 42 H 1.09001 * 110.72194 * 324.78471 * 15 13 11 43 43 H 1.09001 * 109.88364 * 262.77461 * 16 15 13 44 44 H 1.09004 * 109.87812 * 141.60984 * 16 15 13 45 45 H 0.96993 * 119.99943 * 179.97438 * 21 20 18 46 46 H 1.09005 * 110.36351 * 94.71150 * 26 17 16 47 47 H 1.08991 * 110.36864 * 217.03292 * 26 17 16 48 48 H 1.08002 * 119.58252 * 179.72390 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2089 0.0000 4 6 3.4326 1.2740 0.0005 5 6 4.0484 2.5133 0.0000 6 6 3.2503 3.6493 -0.0005 7 6 3.8766 5.0199 -0.0006 8 6 4.0890 5.4835 -1.4431 9 6 4.7159 6.8539 -1.4432 10 8 4.9675 7.4057 -0.3930 11 7 4.9959 7.4668 -2.6105 12 6 4.6914 6.8005 -3.8792 13 6 5.6058 8.7988 -2.6106 14 1 5.8312 9.1237 -1.5948 15 6 4.6965 9.8268 -3.3344 16 6 5.7017 10.8857 -3.8342 17 7 7.0196 10.2379 -3.9038 18 6 8.1868 10.8424 -4.2880 19 1 9.1218 10.3072 -4.2140 20 6 8.1678 12.1431 -4.7726 21 7 7.0535 12.8425 -4.7369 22 14 9.7240 12.9006 -5.4753 23 1 9.7362 12.7279 -6.9502 24 1 9.7622 14.3481 -5.1461 25 1 10.9108 12.2279 -4.8884 26 6 6.8755 8.8280 -3.4975 27 6 1.8769 3.5097 0.0048 28 7 1.3185 2.3140 -0.0004 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 4.0229 0.3696 0.0005 33 1 5.1253 2.5948 0.0000 34 1 4.8369 4.9807 0.5136 35 1 3.2179 5.7204 0.5129 36 1 3.1287 5.5228 -1.9573 37 1 4.7476 4.7831 -1.9566 38 1 5.5505 6.2081 -4.1938 39 1 3.8283 6.1478 -3.7487 40 1 4.4689 7.5497 -4.6388 41 1 3.9845 10.2694 -2.6378 42 1 4.1786 9.3606 -4.1726 43 1 5.7362 11.7225 -3.1365 44 1 5.4086 11.2370 -4.8236 45 1 7.0404 13.7515 -5.0751 46 1 6.7414 8.1928 -4.3731 47 1 7.7457 8.5074 -2.9248 48 1 1.2516 4.3903 0.0089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698567033.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:58 Heat of formation + Delta-G solvation = -30.970764 kcal Electronic energy + Delta-G solvation = -27829.597084 eV Core-core repulsion = 23884.944930 eV Total energy + Delta-G solvation = -3944.652154 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.65133 -41.08404 -39.18825 -38.82528 -36.23309 -35.17304 -34.04428 -33.13729 -31.31652 -30.60843 -29.13876 -28.17663 -27.72002 -26.55322 -25.41651 -24.35267 -22.75661 -22.05548 -21.57367 -19.90021 -19.34830 -18.93980 -18.36028 -18.09967 -17.23183 -16.94325 -16.69144 -16.62196 -16.03955 -15.75567 -15.40520 -15.30291 -15.26949 -14.60709 -14.42786 -14.26103 -14.20891 -14.00369 -13.93721 -13.65764 -13.58983 -13.32375 -12.96838 -12.90318 -12.81355 -12.73843 -12.51724 -12.31268 -12.07843 -12.02207 -12.00403 -11.95433 -11.81573 -11.47261 -10.87326 -10.73533 -10.71643 -10.56773 -9.60482 -9.33778 -8.90957 -7.87679 -5.23452 0.17427 0.30913 1.46195 1.47894 1.57033 1.67991 1.99900 2.18949 2.50085 2.78297 3.30759 3.37673 3.52536 3.68449 3.91454 3.93824 3.98164 4.01376 4.07992 4.20586 4.22485 4.29818 4.34366 4.41391 4.44358 4.48256 4.58397 4.61792 4.70071 4.73675 4.77621 4.79807 4.83687 4.95180 4.98134 5.03433 5.06414 5.17556 5.23592 5.42319 5.43443 5.52999 5.58308 5.63355 5.71339 6.17099 6.26158 6.50427 6.86922 7.07394 7.23113 7.73758 8.38157 9.23009 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.036680 B = 0.001790 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.185046 B =15640.596348 C =15779.702719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.324 6.324 3 C 0.292 3.708 4 C -0.191 4.191 5 C -0.034 4.034 6 C -0.164 4.164 7 C -0.049 4.049 8 C -0.120 4.120 9 C 0.507 3.493 10 O -0.589 6.589 11 N -0.602 5.602 12 C 0.068 3.932 13 C 0.138 3.862 14 H 0.078 0.922 15 C -0.134 4.134 16 C 0.187 3.813 17 N -0.625 5.625 18 C -0.246 4.246 19 H 0.082 0.918 20 C -0.063 4.063 21 N -0.949 5.949 22 Si 0.980 3.020 23 H -0.284 1.284 24 H -0.295 1.295 25 H -0.268 1.268 26 C 0.133 3.867 27 C 0.135 3.865 28 N -0.557 5.557 29 H 0.120 0.880 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.156 0.844 33 H 0.164 0.836 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.069 0.931 39 H 0.106 0.894 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.005 0.995 44 H 0.019 0.981 45 H 0.248 0.752 46 H 0.043 0.957 47 H 0.033 0.967 48 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.922 -26.610 6.536 30.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.231 6.231 3 C 0.114 3.886 4 C -0.212 4.212 5 C -0.059 4.059 6 C -0.166 4.166 7 C -0.088 4.088 8 C -0.160 4.160 9 C 0.297 3.703 10 O -0.470 6.470 11 N -0.334 5.334 12 C -0.073 4.073 13 C 0.033 3.967 14 H 0.096 0.904 15 C -0.173 4.173 16 C 0.062 3.938 17 N -0.352 5.352 18 C -0.375 4.375 19 H 0.100 0.900 20 C -0.257 4.257 21 N -0.597 5.597 22 Si 0.808 3.192 23 H -0.211 1.211 24 H -0.222 1.222 25 H -0.193 1.193 26 C 0.007 3.993 27 C -0.020 4.020 28 N -0.280 5.280 29 H 0.138 0.862 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.174 0.826 33 H 0.182 0.818 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.088 0.912 39 H 0.124 0.876 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.105 0.895 43 H 0.023 0.977 44 H 0.037 0.963 45 H 0.057 0.943 46 H 0.060 0.940 47 H 0.051 0.949 48 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -13.544 -26.520 6.992 30.588 hybrid contribution 1.409 1.310 -0.375 1.961 sum -12.134 -25.210 6.617 28.750 Atomic orbital electron populations 1.23004 0.76110 1.04450 1.02089 1.86213 1.24158 1.24757 1.87993 1.20197 0.90279 0.84836 0.93324 1.21323 0.91584 1.00569 1.07676 1.21660 1.01790 0.90140 0.92345 1.20698 0.94553 0.96269 1.05104 1.20086 1.01577 0.91489 0.95605 1.21718 1.03498 0.91394 0.99354 1.21473 0.77660 0.88732 0.82386 1.90685 1.55428 1.68263 1.32613 1.47878 1.60722 1.16957 1.07792 1.22077 1.02641 0.98231 0.84365 1.21894 0.92898 0.82711 0.99212 0.90404 1.23037 0.97508 0.96539 1.00218 1.20888 0.83391 0.92242 0.97315 1.44668 1.05101 1.06508 1.78935 1.19448 0.86250 0.96829 1.34967 0.89987 1.25688 1.00579 0.97416 1.01983 1.70185 1.27390 1.10014 1.52152 0.85047 0.78924 0.77060 0.78215 1.21101 1.22181 1.19300 1.21851 0.95462 0.86214 0.95798 1.22641 0.92901 0.93653 0.92852 1.67325 1.41564 0.99301 1.19843 0.86204 0.92770 0.92597 0.82624 0.81813 0.90662 0.90633 0.86384 0.86493 0.91213 0.87590 0.91089 0.91035 0.89512 0.97709 0.96309 0.94267 0.93961 0.94884 0.80919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.38 113.37 1.18 1.64 16 2 O -0.32 -5.71 10.48 -89.94 -0.94 -6.65 16 3 C 0.29 5.35 7.49 84.80 0.63 5.99 16 4 C -0.19 -2.74 10.04 22.47 0.23 -2.52 16 5 C -0.03 -0.42 9.85 22.45 0.22 -0.20 16 6 C -0.16 -2.26 5.15 -19.77 -0.10 -2.36 16 7 C -0.05 -0.74 4.66 29.85 0.14 -0.60 16 8 C -0.12 -1.72 4.23 29.85 0.13 -1.59 16 9 C 0.51 12.89 7.67 87.66 0.67 13.56 16 10 O -0.59 -20.53 15.36 -3.01 -0.05 -20.58 16 11 N -0.60 -15.72 2.91 -814.83 -2.37 -18.09 16 12 C 0.07 1.19 8.85 127.77 1.13 2.32 16 13 C 0.14 4.96 3.45 46.38 0.16 5.12 16 14 H 0.08 3.26 7.02 -2.39 -0.02 3.24 16 15 C -0.13 -4.93 6.51 31.78 0.21 -4.72 16 16 C 0.19 9.32 5.38 86.73 0.47 9.79 16 17 N -0.63 -32.45 3.39 -691.99 -2.35 -34.80 16 18 C -0.25 -13.94 10.26 84.03 0.86 -13.07 16 19 H 0.08 4.45 7.84 -2.91 -0.02 4.42 16 20 C -0.06 -3.63 5.48 84.86 0.47 -3.17 16 21 N -0.95 -57.39 10.36 21.65 0.22 -57.16 16 22 Si 0.98 45.87 29.56 68.60 2.03 47.89 16 23 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 24 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 25 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 26 C 0.13 5.43 6.79 86.85 0.59 6.02 16 27 C 0.13 2.07 10.85 84.63 0.92 2.98 16 28 N -0.56 -10.45 9.22 -308.95 -2.85 -13.30 16 29 H 0.12 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.05 0.69 8.10 -2.39 -0.02 0.67 16 31 H 0.06 0.70 8.10 -2.39 -0.02 0.68 16 32 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 33 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 34 H 0.07 1.29 8.05 -2.39 -0.02 1.27 16 35 H 0.08 1.29 8.05 -2.38 -0.02 1.27 16 36 H 0.12 1.18 7.40 -2.39 -0.02 1.16 16 37 H 0.12 1.20 8.11 -2.39 -0.02 1.18 16 38 H 0.07 1.09 8.09 -2.39 -0.02 1.07 16 39 H 0.11 1.07 6.44 -2.39 -0.02 1.05 16 40 H 0.07 1.39 6.42 -2.39 -0.02 1.37 16 41 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.09 2.75 6.40 -2.39 -0.02 2.73 16 43 H 0.00 0.26 7.55 -2.39 -0.02 0.25 16 44 H 0.02 1.03 7.36 -2.39 -0.02 1.01 16 45 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 46 H 0.04 1.58 7.00 -2.38 -0.02 1.57 16 47 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -76.59 388.50 2.54 -74.05 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 0.95 Total: 9.46 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: 7.89 Total: 19.18 kcal Atomic # 7 Polarization: -116.01 SS G_CDS: -7.34 Total: -123.35 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.99 Total: -27.23 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.89 kcal Total: -76.59 2.54 -74.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698567033.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.081 kcal (2) G-P(sol) polarization free energy of solvation -76.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds