Wall clock time and date at job start Tue Mar 31 2020 17:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35692 * 116.99989 * 2 1 4 4 C 1.38889 * 119.62262 * 179.73058 * 3 2 1 5 5 C 1.39566 * 118.94500 * 179.73011 * 4 3 2 6 6 C 1.48169 * 120.89398 * 180.22958 * 5 4 3 7 7 O 1.21508 * 120.00490 * 220.38448 * 6 5 4 8 8 N 1.34782 * 119.99398 * 40.38480 * 6 5 4 9 9 C 1.46924 * 120.63165 * 5.54176 * 8 6 5 10 10 C 1.53625 * 108.54357 * 126.36776 * 9 8 6 11 11 C 1.53037 * 109.23915 * 54.85564 * 10 9 8 12 12 C 1.53039 * 109.53827 * 298.50674 * 11 10 9 13 13 H 1.09007 * 109.49982 * 301.42060 * 12 11 10 14 14 C 1.52999 * 109.49856 * 181.32256 * 12 11 10 15 15 C 1.52998 * 109.47303 * 175.16590 * 14 12 11 16 16 N 1.46501 * 109.47235 * 179.97438 * 15 14 12 17 17 C 1.36939 * 119.99690 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00319 * 359.97438 * 17 16 15 19 19 C 1.38817 * 119.99489 * 180.02562 * 17 16 15 20 20 N 1.31623 * 119.99952 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 120.00129 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47035 * 90.00434 * 21 19 17 23 23 H 1.48500 * 109.47003 * 209.99768 * 21 19 17 24 24 H 1.48492 * 109.47194 * 330.00052 * 21 19 17 25 25 C 1.46920 * 120.62704 * 185.81539 * 8 6 5 26 26 C 1.39973 * 118.21966 * 0.52865 * 5 4 3 27 27 C 1.37981 * 119.12799 * 359.72580 * 26 5 4 28 28 N 1.31909 * 120.98005 * 0.02562 * 27 26 5 29 29 H 1.08997 * 109.47240 * 60.00364 * 1 2 3 30 30 H 1.09002 * 109.46839 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47167 * 300.00047 * 1 2 3 32 32 H 1.08005 * 120.52651 * 359.97438 * 4 3 2 33 33 H 1.09001 * 109.58227 * 246.20017 * 9 8 6 34 34 H 1.09000 * 109.59134 * 6.62024 * 9 8 6 35 35 H 1.08994 * 109.63362 * 294.86027 * 10 9 8 36 36 H 1.09001 * 109.45290 * 174.73645 * 10 9 8 37 37 H 1.09002 * 109.45933 * 178.49226 * 11 10 9 38 38 H 1.08996 * 109.45421 * 58.52468 * 11 10 9 39 39 H 1.09005 * 109.46882 * 295.16279 * 14 12 11 40 40 H 1.09001 * 109.47437 * 55.16421 * 14 12 11 41 41 H 1.09005 * 109.46898 * 299.99680 * 15 14 12 42 42 H 1.08996 * 109.47701 * 59.99559 * 15 14 12 43 43 H 0.96998 * 120.00004 * 0.02562 * 16 15 14 44 44 H 0.96992 * 120.00261 * 179.97438 * 20 19 17 45 45 H 1.08997 * 109.58808 * 353.37782 * 25 8 6 46 46 H 1.09007 * 109.58762 * 113.65573 * 25 8 6 47 47 H 1.07992 * 120.43524 * 179.75201 * 26 5 4 48 48 H 1.07996 * 119.50604 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 3.4325 1.2726 0.0057 5 6 4.0514 2.5235 -0.0002 6 6 5.5284 2.6416 0.0005 7 8 6.0696 3.4924 0.6784 8 7 6.2715 1.8051 -0.7510 9 6 5.6302 0.8524 -1.6674 10 6 6.2283 1.0447 -3.0693 11 6 7.7509 0.9127 -2.9904 12 6 8.3123 2.0022 -2.0740 13 1 8.0323 2.9824 -2.4601 14 6 9.8373 1.8899 -2.0219 15 6 10.4066 3.0507 -1.2038 16 7 11.8667 2.9428 -1.1533 17 6 12.5992 3.8779 -0.4721 18 1 12.1006 4.6952 0.0277 19 6 13.9828 3.7759 -0.4247 20 7 14.6870 4.6750 0.2297 21 14 14.8453 2.3626 -1.2897 22 1 15.1707 2.7598 -2.6831 23 1 16.0978 2.0291 -0.5649 24 1 13.9533 1.1756 -1.3088 25 6 7.7380 1.8247 -0.6650 26 6 3.2394 3.6637 -0.0001 27 6 1.8680 3.5116 -0.0002 28 7 1.3178 2.3127 0.0003 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.0231 0.3683 0.0105 33 1 5.8155 -0.1655 -1.3245 34 1 4.5569 1.0402 -1.6975 35 1 5.9679 2.0338 -3.4460 36 1 5.8314 0.2834 -3.7409 37 1 8.1770 1.0219 -3.9877 38 1 8.0100 -0.0675 -2.5902 39 1 10.1162 0.9452 -1.5549 40 1 10.2393 1.9274 -3.0343 41 1 10.1276 3.9954 -1.6707 42 1 10.0047 3.0133 -0.1913 43 1 12.3147 2.2093 -1.6031 44 1 15.6537 4.6035 0.2631 45 1 8.0560 2.6542 -0.0336 46 1 8.0917 0.8854 -0.2397 47 1 3.6805 4.6494 -0.0005 48 1 1.2358 4.3871 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698675591.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:03 Heat of formation + Delta-G solvation = -19.865401 kcal Electronic energy + Delta-G solvation = -28402.185269 eV Core-core repulsion = 24458.014680 eV Total energy + Delta-G solvation = -3944.170589 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.41652 -40.19221 -38.40075 -37.73264 -35.59512 -33.95902 -32.78242 -32.25025 -31.22139 -30.91145 -28.10800 -27.63074 -26.31594 -24.39829 -24.17740 -23.47347 -22.35506 -20.99899 -20.66965 -19.83211 -18.45829 -17.56134 -17.46829 -16.96434 -16.49971 -16.40268 -16.19403 -15.44347 -14.96030 -14.81747 -14.63921 -14.43044 -14.27026 -14.00949 -13.80490 -13.58443 -13.49916 -13.31445 -13.00175 -12.74720 -12.66730 -12.31960 -12.16630 -11.67887 -11.61860 -11.37170 -11.31728 -11.20709 -10.92134 -10.66609 -10.58317 -10.53963 -10.32106 -10.24583 -10.01300 -9.84782 -9.54194 -8.98960 -8.86137 -8.84321 -7.18059 -5.72045 -3.07388 0.35193 0.68385 2.38475 2.52101 2.74415 3.32111 3.39710 3.42123 3.47381 3.78467 4.02096 4.40475 4.49083 4.54050 4.62770 4.64196 4.69021 4.71160 4.82084 4.83915 4.87876 4.98397 5.10750 5.15055 5.18142 5.29098 5.35229 5.43511 5.52023 5.53583 5.57711 5.64276 5.68409 5.80069 5.81103 5.83918 5.91582 6.00845 6.10824 6.19843 6.26129 6.37805 6.71899 6.79700 6.82050 7.08353 7.31800 7.83097 8.05433 8.47085 9.26433 9.98611 10.18639 11.46521 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023651 B = 0.002204 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.602267 B =12699.306544 C =13404.615324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.307 6.307 3 C 0.318 3.682 4 C -0.164 4.164 5 C -0.042 4.042 6 C 0.558 3.442 7 O -0.516 6.516 8 N -0.601 5.601 9 C 0.094 3.906 10 C -0.134 4.134 11 C -0.116 4.116 12 C -0.095 4.095 13 H 0.077 0.923 14 C -0.123 4.123 15 C 0.154 3.846 16 N -0.757 5.757 17 C -0.242 4.242 18 H 0.090 0.910 19 C 0.001 3.999 20 N -0.935 5.935 21 Si 0.886 3.114 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.278 1.278 25 C 0.113 3.887 26 C -0.160 4.160 27 C 0.141 3.859 28 N -0.529 5.529 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.059 0.941 32 H 0.150 0.850 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.026 0.974 42 H 0.029 0.971 43 H 0.360 0.640 44 H 0.259 0.741 45 H 0.103 0.897 46 H 0.073 0.927 47 H 0.149 0.851 48 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.895 -11.436 -5.906 34.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.213 6.213 3 C 0.139 3.861 4 C -0.185 4.185 5 C -0.053 4.053 6 C 0.344 3.656 7 O -0.392 6.392 8 N -0.334 5.334 9 C -0.028 4.028 10 C -0.172 4.172 11 C -0.154 4.154 12 C -0.115 4.115 13 H 0.095 0.905 14 C -0.161 4.161 15 C 0.027 3.973 16 N -0.403 5.403 17 C -0.372 4.372 18 H 0.108 0.892 19 C -0.194 4.194 20 N -0.583 5.583 21 Si 0.717 3.283 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.204 1.204 25 C -0.008 4.008 26 C -0.181 4.181 27 C -0.015 4.015 28 N -0.253 5.253 29 H 0.078 0.922 30 H 0.116 0.884 31 H 0.078 0.922 32 H 0.168 0.832 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.044 0.956 42 H 0.046 0.954 43 H 0.192 0.808 44 H 0.069 0.931 45 H 0.122 0.878 46 H 0.091 0.909 47 H 0.167 0.833 48 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -32.329 -11.139 -5.387 34.616 hybrid contribution 1.371 -0.829 -0.603 1.712 sum -30.957 -11.968 -5.991 33.727 Atomic orbital electron populations 1.22893 0.76870 1.03157 1.02581 1.86253 1.23173 1.24148 1.87768 1.19652 0.88927 0.84929 0.92617 1.21288 0.92373 0.98644 1.06174 1.20167 0.94087 0.93363 0.97690 1.18167 0.85821 0.81269 0.80328 1.90858 1.72567 1.33869 1.41894 1.48042 1.07526 1.36854 1.40944 1.22243 0.98123 0.92875 0.89595 1.21997 0.96557 1.02713 0.95945 1.21608 0.94413 0.99132 1.00216 1.21448 0.95624 0.99712 0.94719 0.90473 1.21785 0.92872 1.00139 1.01306 1.20699 0.84580 0.95083 0.96938 1.42722 1.01540 1.31313 1.64712 1.19095 0.89210 1.03896 1.25010 0.89209 1.24697 0.96079 0.98262 1.00384 1.69708 1.05792 1.36143 1.46681 0.86515 0.79315 0.82973 0.79536 1.21143 1.21763 1.20379 1.21917 0.76862 1.03971 0.98089 1.22120 0.94255 0.99534 1.02179 1.22428 0.92483 0.93646 0.92900 1.67203 1.41222 0.98946 1.17978 0.92152 0.88442 0.92178 0.83198 0.90771 0.89169 0.91378 0.90620 0.91329 0.91594 0.91774 0.91502 0.95597 0.95362 0.80765 0.93120 0.87850 0.90910 0.83334 0.81460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.38 101.05 1.05 1.27 16 2 O -0.31 -2.60 10.47 -18.78 -0.20 -2.79 16 3 C 0.32 2.93 7.49 -17.16 -0.13 2.80 16 4 C -0.16 -1.46 7.43 -38.85 -0.29 -1.75 16 5 C -0.04 -0.43 5.14 -104.67 -0.54 -0.97 16 6 C 0.56 7.11 7.37 -12.18 -0.09 7.02 16 7 O -0.52 -8.67 16.37 5.36 0.09 -8.58 16 8 N -0.60 -6.61 2.97 -173.50 -0.51 -7.12 16 9 C 0.09 0.73 4.98 -3.49 -0.02 0.72 16 10 C -0.13 -1.01 6.10 -26.39 -0.16 -1.17 16 11 C -0.12 -1.05 5.16 -26.69 -0.14 -1.19 16 12 C -0.10 -1.13 2.34 -90.50 -0.21 -1.34 16 13 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 14 C -0.12 -1.79 4.80 -26.73 -0.13 -1.91 16 15 C 0.15 3.04 6.02 -4.04 -0.02 3.01 16 16 N -0.76 -18.56 5.41 -59.91 -0.32 -18.89 16 17 C -0.24 -7.11 10.47 -15.06 -0.16 -7.27 16 18 H 0.09 2.83 8.06 -52.49 -0.42 2.41 16 19 C 0.00 0.04 5.50 -17.43 -0.10 -0.06 16 20 N -0.94 -30.09 13.97 55.49 0.78 -29.32 16 21 Si 0.89 22.51 27.73 -169.99 -4.71 17.79 16 22 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 24 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 25 C 0.11 1.41 5.33 -3.72 -0.02 1.39 16 26 C -0.16 -1.43 9.76 -39.03 -0.38 -1.81 16 27 C 0.14 1.07 11.17 -17.61 -0.20 0.88 16 28 N -0.53 -4.77 9.18 -13.38 -0.12 -4.89 16 29 H 0.06 0.33 8.10 -51.93 -0.42 -0.09 16 30 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.34 8.10 -51.93 -0.42 -0.08 16 32 H 0.15 1.14 6.67 -52.48 -0.35 0.79 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.09 0.64 4.73 -51.93 -0.25 0.39 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.03 0.58 6.70 -51.93 -0.35 0.23 16 43 H 0.36 8.49 5.53 -40.82 -0.23 8.27 16 44 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 45 H 0.10 1.59 5.71 -51.93 -0.30 1.29 16 46 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 47 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 48 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 383.88 15.07 5.78 5.78 Total: -1.00 -35.85 383.88 -8.15 -44.00 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -7.39 Total: 4.39 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -1.53 Total: -0.37 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: -0.19 Total: -60.22 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: -0.11 Total: -11.38 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.71 Total: 17.79 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.85 -8.15 -44.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698675591.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.130 kcal (2) G-P(sol) polarization free energy of solvation -35.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds