Wall clock time and date at job start Tue Mar 31 2020 17:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35692 * 116.99989 * 2 1 4 4 C 1.38889 * 119.62262 * 179.73058 * 3 2 1 5 5 C 1.39566 * 118.94500 * 179.73011 * 4 3 2 6 6 C 1.48169 * 120.89398 * 180.22958 * 5 4 3 7 7 O 1.21508 * 120.00490 * 220.38448 * 6 5 4 8 8 N 1.34782 * 119.99398 * 40.38480 * 6 5 4 9 9 C 1.46924 * 120.63165 * 5.54176 * 8 6 5 10 10 C 1.53625 * 108.54357 * 126.36776 * 9 8 6 11 11 C 1.53037 * 109.23915 * 54.85564 * 10 9 8 12 12 C 1.53039 * 109.53827 * 298.50674 * 11 10 9 13 13 H 1.09007 * 109.49982 * 301.42060 * 12 11 10 14 14 C 1.52999 * 109.49856 * 181.32256 * 12 11 10 15 15 C 1.52998 * 109.47303 * 175.16590 * 14 12 11 16 16 N 1.46501 * 109.47235 * 179.97438 * 15 14 12 17 17 C 1.36939 * 119.99690 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00319 * 359.97438 * 17 16 15 19 19 C 1.38817 * 119.99489 * 180.02562 * 17 16 15 20 20 N 1.31623 * 119.99952 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 120.00129 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47035 * 90.00434 * 21 19 17 23 23 H 1.48500 * 109.47003 * 209.99768 * 21 19 17 24 24 H 1.48492 * 109.47194 * 330.00052 * 21 19 17 25 25 C 1.46920 * 120.62704 * 185.81539 * 8 6 5 26 26 C 1.39973 * 118.21966 * 0.52865 * 5 4 3 27 27 C 1.37981 * 119.12799 * 359.72580 * 26 5 4 28 28 N 1.31909 * 120.98005 * 0.02562 * 27 26 5 29 29 H 1.08997 * 109.47240 * 60.00364 * 1 2 3 30 30 H 1.09002 * 109.46839 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47167 * 300.00047 * 1 2 3 32 32 H 1.08005 * 120.52651 * 359.97438 * 4 3 2 33 33 H 1.09001 * 109.58227 * 246.20017 * 9 8 6 34 34 H 1.09000 * 109.59134 * 6.62024 * 9 8 6 35 35 H 1.08994 * 109.63362 * 294.86027 * 10 9 8 36 36 H 1.09001 * 109.45290 * 174.73645 * 10 9 8 37 37 H 1.09002 * 109.45933 * 178.49226 * 11 10 9 38 38 H 1.08996 * 109.45421 * 58.52468 * 11 10 9 39 39 H 1.09005 * 109.46882 * 295.16279 * 14 12 11 40 40 H 1.09001 * 109.47437 * 55.16421 * 14 12 11 41 41 H 1.09005 * 109.46898 * 299.99680 * 15 14 12 42 42 H 1.08996 * 109.47701 * 59.99559 * 15 14 12 43 43 H 0.96998 * 120.00004 * 0.02562 * 16 15 14 44 44 H 0.96992 * 120.00261 * 179.97438 * 20 19 17 45 45 H 1.08997 * 109.58808 * 353.37782 * 25 8 6 46 46 H 1.09007 * 109.58762 * 113.65573 * 25 8 6 47 47 H 1.07992 * 120.43524 * 179.75201 * 26 5 4 48 48 H 1.07996 * 119.50604 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 3.4325 1.2726 0.0057 5 6 4.0514 2.5235 -0.0002 6 6 5.5284 2.6416 0.0005 7 8 6.0696 3.4924 0.6784 8 7 6.2715 1.8051 -0.7510 9 6 5.6302 0.8524 -1.6674 10 6 6.2283 1.0447 -3.0693 11 6 7.7509 0.9127 -2.9904 12 6 8.3123 2.0022 -2.0740 13 1 8.0323 2.9824 -2.4601 14 6 9.8373 1.8899 -2.0219 15 6 10.4066 3.0507 -1.2038 16 7 11.8667 2.9428 -1.1533 17 6 12.5992 3.8779 -0.4721 18 1 12.1006 4.6952 0.0277 19 6 13.9828 3.7759 -0.4247 20 7 14.6870 4.6750 0.2297 21 14 14.8453 2.3626 -1.2897 22 1 15.1707 2.7598 -2.6831 23 1 16.0978 2.0291 -0.5649 24 1 13.9533 1.1756 -1.3088 25 6 7.7380 1.8247 -0.6650 26 6 3.2394 3.6637 -0.0001 27 6 1.8680 3.5116 -0.0002 28 7 1.3178 2.3127 0.0003 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.0231 0.3683 0.0105 33 1 5.8155 -0.1655 -1.3245 34 1 4.5569 1.0402 -1.6975 35 1 5.9679 2.0338 -3.4460 36 1 5.8314 0.2834 -3.7409 37 1 8.1770 1.0219 -3.9877 38 1 8.0100 -0.0675 -2.5902 39 1 10.1162 0.9452 -1.5549 40 1 10.2393 1.9274 -3.0343 41 1 10.1276 3.9954 -1.6707 42 1 10.0047 3.0133 -0.1913 43 1 12.3147 2.2093 -1.6031 44 1 15.6537 4.6035 0.2631 45 1 8.0560 2.6542 -0.0336 46 1 8.0917 0.8854 -0.2397 47 1 3.6805 4.6494 -0.0005 48 1 1.2358 4.3871 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698675591.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:02 Heat of formation + Delta-G solvation = -45.964928 kcal Electronic energy + Delta-G solvation = -28403.317030 eV Core-core repulsion = 24458.014680 eV Total energy + Delta-G solvation = -3945.302350 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.16597 -41.00598 -39.19240 -38.59505 -37.15061 -35.28111 -33.89254 -33.35128 -32.57004 -31.83783 -29.39430 -28.30900 -27.13474 -25.82366 -24.91835 -24.25539 -23.82168 -22.32719 -21.66294 -20.65383 -19.65856 -19.16502 -18.29328 -17.75154 -17.20150 -17.08975 -17.00655 -16.67205 -16.25517 -15.97078 -15.78759 -15.42420 -15.17735 -14.97678 -14.90905 -14.73596 -14.48076 -14.37775 -14.25738 -13.99167 -13.70572 -13.31108 -13.08212 -12.88322 -12.68191 -12.64885 -12.38974 -12.20729 -12.06178 -11.97647 -11.85698 -11.80075 -11.64550 -11.46757 -11.24086 -11.00521 -10.96274 -10.65744 -9.77041 -9.61715 -9.32897 -8.04921 -5.39904 -0.38268 0.02683 1.36298 1.42005 1.48913 1.49542 1.72305 2.06751 2.47431 2.63267 3.12773 3.25481 3.32763 3.48408 3.78683 3.81177 3.84884 3.86802 3.93504 4.04652 4.06175 4.28324 4.33609 4.43349 4.45659 4.46210 4.47240 4.54725 4.63104 4.67205 4.69257 4.80406 4.81735 4.83271 4.89848 4.96000 5.03233 5.12034 5.20883 5.21160 5.28833 5.35380 5.42796 5.50093 5.72506 6.12631 6.18747 6.19684 6.67194 6.88279 7.05434 7.80256 8.02451 9.16850 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023651 B = 0.002204 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.602267 B =12699.306544 C =13404.615324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.314 6.314 3 C 0.311 3.689 4 C -0.160 4.160 5 C -0.054 4.054 6 C 0.553 3.447 7 O -0.572 6.572 8 N -0.595 5.595 9 C 0.090 3.910 10 C -0.129 4.129 11 C -0.110 4.110 12 C -0.086 4.086 13 H 0.062 0.938 14 C -0.108 4.108 15 C 0.150 3.850 16 N -0.758 5.758 17 C -0.243 4.243 18 H 0.047 0.953 19 C -0.069 4.069 20 N -0.985 5.985 21 Si 0.965 3.035 22 H -0.275 1.275 23 H -0.294 1.294 24 H -0.247 1.247 25 C 0.113 3.887 26 C -0.168 4.168 27 C 0.149 3.851 28 N -0.536 5.536 29 H 0.061 0.939 30 H 0.123 0.877 31 H 0.056 0.944 32 H 0.163 0.837 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.058 0.942 36 H 0.105 0.895 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.012 0.988 42 H 0.017 0.983 43 H 0.369 0.631 44 H 0.259 0.741 45 H 0.064 0.936 46 H 0.086 0.914 47 H 0.148 0.852 48 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.779 -14.910 -8.154 37.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.221 6.221 3 C 0.132 3.868 4 C -0.181 4.181 5 C -0.065 4.065 6 C 0.341 3.659 7 O -0.452 6.452 8 N -0.326 5.326 9 C -0.031 4.031 10 C -0.167 4.167 11 C -0.148 4.148 12 C -0.106 4.106 13 H 0.080 0.920 14 C -0.147 4.147 15 C 0.024 3.976 16 N -0.404 5.404 17 C -0.374 4.374 18 H 0.065 0.935 19 C -0.260 4.260 20 N -0.635 5.635 21 Si 0.791 3.209 22 H -0.201 1.201 23 H -0.220 1.220 24 H -0.171 1.171 25 C -0.009 4.009 26 C -0.189 4.189 27 C -0.007 4.007 28 N -0.261 5.261 29 H 0.080 0.920 30 H 0.141 0.859 31 H 0.075 0.925 32 H 0.181 0.819 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.077 0.923 36 H 0.123 0.877 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.030 0.970 42 H 0.035 0.965 43 H 0.202 0.798 44 H 0.068 0.932 45 H 0.083 0.917 46 H 0.104 0.896 47 H 0.166 0.834 48 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -34.280 -14.668 -7.682 38.070 hybrid contribution 1.840 0.344 0.154 1.878 sum -32.440 -14.325 -7.528 36.252 Atomic orbital electron populations 1.23110 0.75433 1.04856 1.02493 1.86243 1.24611 1.23717 1.87570 1.19790 0.89097 0.85346 0.92535 1.21312 0.92542 0.98416 1.05786 1.20002 0.92482 0.94576 0.99393 1.18616 0.86996 0.80626 0.79664 1.90826 1.73760 1.36262 1.44320 1.48135 1.06892 1.36806 1.40808 1.22542 0.98471 0.92980 0.89137 1.21991 0.95425 1.03259 0.96018 1.21582 0.95314 0.98212 0.99679 1.21344 0.93782 1.00505 0.94970 0.91983 1.21667 0.94402 0.97902 1.00687 1.20857 0.82246 0.97115 0.97354 1.42691 1.03155 1.30457 1.64076 1.19037 0.89830 1.03771 1.24748 0.93482 1.25671 0.96848 1.01832 1.01681 1.69915 1.06100 1.38796 1.48738 0.85260 0.77818 0.79741 0.78052 1.20065 1.22048 1.17079 1.21786 0.78136 1.02988 0.98030 1.22255 0.94948 0.99288 1.02415 1.22894 0.92164 0.94271 0.91324 1.67287 1.41404 0.99286 1.18084 0.91987 0.85931 0.92477 0.81907 0.88509 0.88240 0.92343 0.87660 0.90437 0.90134 0.90537 0.90401 0.96956 0.96524 0.79762 0.93221 0.91743 0.89621 0.83421 0.78296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.38 113.37 1.18 1.50 16 2 O -0.31 -4.69 10.47 -90.11 -0.94 -5.63 16 3 C 0.31 5.22 7.49 84.80 0.63 5.85 16 4 C -0.16 -2.63 7.43 22.75 0.17 -2.46 16 5 C -0.05 -1.09 5.14 -19.90 -0.10 -1.19 16 6 C 0.55 14.56 7.37 86.88 0.64 15.20 16 7 O -0.57 -20.67 16.37 -3.74 -0.06 -20.74 16 8 N -0.60 -12.81 2.97 -821.12 -2.44 -15.24 16 9 C 0.09 1.16 4.98 86.51 0.43 1.59 16 10 C -0.13 -1.51 6.10 30.82 0.19 -1.32 16 11 C -0.11 -1.62 5.16 30.62 0.16 -1.46 16 12 C -0.09 -1.94 2.34 -10.72 -0.03 -1.97 16 13 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 14 C -0.11 -2.99 4.80 30.59 0.15 -2.84 16 15 C 0.15 6.05 6.02 86.38 0.52 6.57 16 16 N -0.76 -37.15 5.41 -343.45 -1.86 -39.00 16 17 C -0.24 -14.72 10.47 84.03 0.88 -13.84 16 18 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 19 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 20 N -0.99 -65.39 13.97 21.65 0.30 -65.09 16 21 Si 0.97 46.21 27.73 68.60 1.90 48.11 16 22 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 23 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 24 H -0.25 -10.44 6.52 99.48 0.65 -9.79 16 25 C 0.11 2.82 5.33 86.36 0.46 3.28 16 26 C -0.17 -2.96 9.76 22.63 0.22 -2.73 16 27 C 0.15 2.04 11.17 84.62 0.94 2.99 16 28 N -0.54 -8.76 9.18 -309.14 -2.84 -11.60 16 29 H 0.06 0.55 8.10 -2.39 -0.02 0.53 16 30 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.56 8.10 -2.39 -0.02 0.54 16 32 H 0.16 2.14 6.67 -2.91 -0.02 2.12 16 33 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.10 1.16 4.73 -2.39 -0.01 1.14 16 35 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 40 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 42 H 0.02 0.72 6.70 -2.39 -0.02 0.70 16 43 H 0.37 16.65 5.53 -92.71 -0.51 16.14 16 44 H 0.26 16.23 8.31 -92.71 -0.77 15.46 16 45 H 0.06 2.13 5.71 -2.39 -0.01 2.12 16 46 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 47 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 48 H 0.20 1.30 8.06 -2.91 -0.02 1.28 16 Total: -1.00 -81.96 383.88 1.38 -80.58 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: 0.40 Total: 23.20 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: 6.91 Total: 5.41 kcal Atomic # 7 Polarization: -124.10 SS G_CDS: -6.83 Total: -130.93 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -1.01 Total: -26.37 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.90 Total: 48.11 kcal Total: -81.96 1.38 -80.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698675591.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.617 kcal (2) G-P(sol) polarization free energy of solvation -81.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds