Wall clock time and date at job start Tue Mar 31 2020 17:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35688 * 117.00007 * 2 1 4 4 C 1.38897 * 119.62327 * 180.30218 * 3 2 1 5 5 C 1.39569 * 118.94262 * 180.22779 * 4 3 2 6 6 C 1.48166 * 120.88813 * 179.75009 * 5 4 3 7 7 O 1.21512 * 120.00198 * 359.72514 * 6 5 4 8 8 N 1.34777 * 119.99971 * 179.71989 * 6 5 4 9 9 C 1.46506 * 119.99873 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.47131 * 35.00870 * 9 8 6 11 11 C 1.53007 * 109.46782 * 155.00310 * 9 8 6 12 12 C 1.52996 * 109.46815 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47048 * 299.99875 * 12 11 9 14 14 H 1.09007 * 109.47327 * 300.00144 * 13 12 11 15 15 C 1.53006 * 109.47389 * 180.02562 * 13 12 11 16 16 N 1.46496 * 109.47236 * 175.00259 * 15 13 12 17 17 C 1.36944 * 119.99684 * 180.02562 * 16 15 13 18 18 H 1.07999 * 119.99831 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99778 * 179.97438 * 17 16 15 20 20 N 1.31617 * 119.99921 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99841 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46836 * 59.99977 * 21 19 17 23 23 H 1.48497 * 109.46983 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47283 * 300.00156 * 21 19 17 25 25 C 1.52998 * 109.47292 * 60.00174 * 13 12 11 26 26 C 1.52996 * 109.47270 * 300.00068 * 25 13 12 27 27 C 1.39963 * 118.22258 * 359.48329 * 5 4 3 28 28 C 1.37982 * 119.13131 * 0.27316 * 27 5 4 29 29 N 1.31912 * 120.97486 * 359.97380 * 28 27 5 30 30 H 1.09001 * 109.47198 * 59.99425 * 1 2 3 31 31 H 1.09002 * 109.47487 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47058 * 299.99891 * 1 2 3 33 33 H 1.07998 * 120.52487 * 359.97438 * 4 3 2 34 34 H 0.96995 * 120.00018 * 0.27923 * 8 6 5 35 35 H 1.08997 * 109.47081 * 300.00199 * 11 9 8 36 36 H 1.08994 * 109.47155 * 60.00052 * 11 9 8 37 37 H 1.08994 * 109.47414 * 59.99968 * 12 11 9 38 38 H 1.09001 * 109.46909 * 180.02562 * 12 11 9 39 39 H 1.09001 * 109.46573 * 295.00108 * 15 13 12 40 40 H 1.08999 * 109.46758 * 54.99399 * 15 13 12 41 41 H 0.96993 * 120.00071 * 359.97438 * 16 15 13 42 42 H 0.97005 * 119.99843 * 180.02562 * 20 19 17 43 43 H 1.09002 * 109.47283 * 60.00068 * 25 13 12 44 44 H 1.09007 * 109.47213 * 179.97438 * 25 13 12 45 45 H 1.09002 * 109.46968 * 300.00193 * 26 25 13 46 46 H 1.09001 * 109.47247 * 179.97438 * 26 25 13 47 47 H 1.08003 * 120.43576 * 180.29357 * 27 5 4 48 48 H 1.07998 * 119.50918 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4325 1.2726 -0.0064 5 6 4.0513 2.5236 -0.0014 6 6 5.5282 2.6416 -0.0023 7 8 6.2177 1.6410 -0.0024 8 7 6.1070 3.8587 -0.0032 9 6 7.5674 3.9754 -0.0047 10 1 7.9961 3.1651 -0.5945 11 6 7.9710 5.3191 -0.6150 12 6 9.4962 5.4407 -0.6171 13 6 10.0165 5.3560 0.8192 14 1 9.5882 6.1664 1.4092 15 6 11.5417 5.4782 0.8172 16 7 12.0303 5.5171 2.1977 17 6 13.3727 5.6251 2.4461 18 1 14.0711 5.6812 1.6243 19 6 13.8356 5.6625 3.7542 20 7 12.9843 5.5946 4.7557 21 14 15.6667 5.8091 4.0931 22 1 16.1817 7.0666 3.4941 23 1 15.8987 5.8286 5.5597 24 1 16.3753 4.6494 3.4947 25 6 9.6129 4.0124 1.4295 26 6 8.0878 3.8907 1.4316 27 6 3.2394 3.6636 -0.0013 28 6 1.8680 3.5116 -0.0003 29 7 1.3178 2.3127 0.0000 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 4.0230 0.3683 -0.0109 34 1 5.5567 4.6574 0.0009 35 1 7.6007 5.3793 -1.6384 36 1 7.5424 6.1294 -0.0253 37 1 9.9245 4.6304 -1.2071 38 1 9.7837 6.3982 -1.0515 39 1 11.9742 4.6201 0.3027 40 1 11.8321 6.3943 0.3029 41 1 11.4030 5.4670 2.9358 42 1 13.3078 5.6210 5.6699 43 1 10.0412 3.2020 0.8396 44 1 9.9840 3.9519 2.4526 45 1 7.6595 4.7011 2.0215 46 1 7.8002 2.9332 1.8660 47 1 3.6805 4.6495 -0.0024 48 1 1.2357 4.3872 -0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700101249.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:23 Heat of formation + Delta-G solvation = -40.909964 kcal Electronic energy + Delta-G solvation = -27678.609277 eV Core-core repulsion = 23733.526127 eV Total energy + Delta-G solvation = -3945.083150 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.28211 -40.08324 -38.54740 -37.94431 -35.31011 -33.84004 -33.02050 -31.49854 -31.00355 -30.64141 -29.03568 -27.76968 -25.61160 -24.31918 -23.79464 -22.89548 -22.37972 -21.01181 -20.69838 -19.73753 -18.88602 -17.73388 -17.12913 -16.92876 -16.47218 -16.22520 -16.06202 -15.30093 -14.93902 -14.69650 -14.59290 -14.40534 -14.14192 -14.10977 -13.84500 -13.68822 -13.23938 -13.08838 -12.67477 -12.37722 -12.22077 -12.17300 -11.99070 -11.89240 -11.67697 -11.03408 -11.00999 -10.91726 -10.74478 -10.61924 -10.38160 -10.31516 -10.18041 -10.08613 -10.04071 -9.78317 -9.59155 -9.17824 -9.02838 -8.82214 -6.86623 -5.72671 -3.00541 0.26174 0.65412 2.45436 2.55810 2.91145 3.39328 3.46669 3.50817 3.51981 3.80244 4.13630 4.44487 4.52521 4.58652 4.61930 4.70786 4.80787 4.84562 4.89107 5.03875 5.18064 5.21375 5.29151 5.30037 5.33011 5.51254 5.54099 5.56694 5.62375 5.63630 5.68497 5.78758 5.93674 6.01196 6.08400 6.23881 6.26780 6.27737 6.36801 6.46675 6.58824 6.73296 6.76412 6.89151 6.99764 7.17967 7.30072 7.73316 7.87120 8.46845 9.57686 10.17094 10.51587 11.50301 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.027042 B = 0.001798 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.168447 B =15570.464024 C =16000.815744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.305 6.305 3 C 0.319 3.681 4 C -0.132 4.132 5 C -0.050 4.050 6 C 0.557 3.443 7 O -0.521 6.521 8 N -0.715 5.715 9 C 0.144 3.856 10 H 0.091 0.909 11 C -0.122 4.122 12 C -0.107 4.107 13 C -0.095 4.095 14 H 0.070 0.930 15 C 0.157 3.843 16 N -0.732 5.732 17 C -0.238 4.238 18 H 0.069 0.931 19 C -0.015 4.015 20 N -0.935 5.935 21 Si 0.907 3.093 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.107 4.107 26 C -0.127 4.127 27 C -0.183 4.183 28 C 0.139 3.861 29 N -0.528 5.528 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.060 0.940 33 H 0.156 0.844 34 H 0.399 0.601 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.018 0.982 40 H 0.017 0.983 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.061 0.939 44 H 0.078 0.922 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.143 0.857 48 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.653 -3.970 -13.049 30.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.211 6.211 3 C 0.140 3.860 4 C -0.154 4.154 5 C -0.061 4.061 6 C 0.342 3.658 7 O -0.397 6.397 8 N -0.366 5.366 9 C 0.041 3.959 10 H 0.109 0.891 11 C -0.161 4.161 12 C -0.146 4.146 13 C -0.114 4.114 14 H 0.088 0.912 15 C 0.029 3.971 16 N -0.376 5.376 17 C -0.370 4.370 18 H 0.087 0.913 19 C -0.211 4.211 20 N -0.583 5.583 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.145 4.145 26 C -0.166 4.166 27 C -0.203 4.203 28 C -0.017 4.017 29 N -0.253 5.253 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.079 0.921 33 H 0.173 0.827 34 H 0.234 0.766 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.036 0.964 40 H 0.035 0.965 41 H 0.217 0.783 42 H 0.065 0.935 43 H 0.079 0.921 44 H 0.096 0.904 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.160 0.840 48 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -27.747 -5.042 -13.072 31.084 hybrid contribution 1.112 0.714 0.575 1.441 sum -26.634 -4.328 -12.498 29.737 Atomic orbital electron populations 1.22903 0.76855 1.03234 1.02540 1.86275 1.23170 1.24083 1.87604 1.19698 0.89007 0.84887 0.92403 1.21163 0.91942 0.99260 1.03004 1.20186 0.93942 0.93350 0.98609 1.18064 0.86653 0.83974 0.77084 1.90822 1.64033 1.36331 1.48514 1.46037 1.08492 1.07547 1.74516 1.21188 0.77740 0.99039 0.97929 0.89120 1.21793 0.97743 0.95954 1.00566 1.21470 0.93231 1.02264 0.97600 1.21360 0.97158 0.97778 0.95102 0.91168 1.20682 0.90308 0.97571 0.88525 1.42371 1.05200 1.88867 1.01161 1.19204 0.83958 1.42081 0.91729 0.91315 1.24727 0.97607 1.03160 0.95589 1.69648 1.32798 1.57782 0.98121 0.86268 0.85264 0.77856 0.76810 1.21339 1.21731 1.21310 1.21492 0.93083 0.97184 1.02725 1.21936 0.97232 1.02134 0.95274 1.22166 0.94985 0.98968 1.04218 1.22381 0.92533 0.93675 0.93085 1.67200 1.41286 0.98955 1.17830 0.92169 0.88387 0.92137 0.82672 0.76600 0.91642 0.91363 0.91666 0.91379 0.96401 0.96520 0.78253 0.93535 0.92051 0.90359 0.91854 0.91747 0.83962 0.81592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.38 101.05 1.05 1.29 16 2 O -0.30 -2.89 10.47 -18.77 -0.20 -3.09 16 3 C 0.32 3.18 7.49 -17.16 -0.13 3.05 16 4 C -0.13 -1.36 9.61 -38.84 -0.37 -1.74 16 5 C -0.05 -0.48 5.91 -104.68 -0.62 -1.09 16 6 C 0.56 6.38 7.76 -12.18 -0.09 6.29 16 7 O -0.52 -8.03 16.10 5.36 0.09 -7.94 16 8 N -0.71 -6.60 5.04 -54.64 -0.28 -6.88 16 9 C 0.14 1.60 2.45 -67.92 -0.17 1.43 16 10 H 0.09 1.17 7.58 -51.93 -0.39 0.78 16 11 C -0.12 -1.17 5.39 -26.73 -0.14 -1.31 16 12 C -0.11 -1.27 5.20 -26.73 -0.14 -1.41 16 13 C -0.10 -1.47 2.22 -90.62 -0.20 -1.68 16 14 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 15 C 0.16 3.14 5.65 -4.04 -0.02 3.12 16 16 N -0.73 -18.61 5.33 -59.91 -0.32 -18.93 16 17 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 18 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 19 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 20 N -0.93 -28.51 13.06 55.49 0.72 -27.78 16 21 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 C -0.11 -1.68 5.08 -26.73 -0.14 -1.81 16 26 C -0.13 -1.67 5.50 -26.73 -0.15 -1.82 16 27 C -0.18 -1.19 9.61 -39.03 -0.38 -1.57 16 28 C 0.14 0.91 11.17 -17.61 -0.20 0.71 16 29 N -0.53 -4.72 9.18 -13.38 -0.12 -4.84 16 30 H 0.06 0.35 8.10 -51.93 -0.42 -0.07 16 31 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.36 8.10 -51.93 -0.42 -0.06 16 33 H 0.16 1.66 7.74 -52.49 -0.41 1.25 16 34 H 0.40 2.43 6.74 -40.82 -0.28 2.15 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.38 10.19 6.85 -40.82 -0.28 9.91 16 42 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.08 1.46 7.18 -51.93 -0.37 1.08 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.14 0.49 6.53 -52.48 -0.34 0.15 16 48 H 0.17 0.53 8.06 -52.49 -0.42 0.11 16 LS Contribution 391.56 15.07 5.90 5.90 Total: -1.00 -34.47 391.56 -8.70 -43.17 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -7.53 Total: 6.72 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -1.94 Total: -3.99 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: 0.01 Total: -58.42 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: -0.11 Total: -11.03 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.47 -8.70 -43.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700101249.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.261 kcal (2) G-P(sol) polarization free energy of solvation -34.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds