Wall clock time and date at job start Tue Mar 31 2020 17:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99895 * 2 1 4 4 C 1.53002 * 109.46728 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47231 * 65.00121 * 4 3 2 6 6 C 1.36936 * 120.00311 * 264.42497 * 5 4 3 7 7 H 1.08001 * 120.00379 * 146.16686 * 6 5 4 8 8 C 1.38813 * 119.99865 * 326.17426 * 6 5 4 9 9 N 1.31621 * 119.99536 * 337.62648 * 8 6 5 10 10 Si 1.86797 * 120.00302 * 157.62991 * 8 6 5 11 11 H 1.48498 * 109.47047 * 59.99510 * 10 8 6 12 12 H 1.48494 * 109.47290 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.46674 * 299.99669 * 10 8 6 14 14 C 1.46502 * 119.99889 * 84.42552 * 5 4 3 15 15 C 1.53001 * 109.46996 * 90.00221 * 14 5 4 16 16 N 1.46498 * 109.47234 * 179.97438 * 15 14 5 17 17 C 1.34774 * 120.00199 * 179.97438 * 16 15 14 18 18 O 1.21284 * 120.00024 * 0.02562 * 17 16 15 19 19 C 1.50706 * 119.99927 * 179.97438 * 17 16 15 20 20 H 1.08994 * 110.25720 * 59.30471 * 19 17 16 21 21 C 1.54341 * 110.29018 * 181.35441 * 19 17 16 22 22 C 1.54522 * 102.32027 * 145.21908 * 21 19 17 23 23 C 1.51228 * 105.16254 * 333.82464 * 22 21 19 24 24 C 1.38733 * 130.69213 * 197.08132 * 23 22 21 25 25 C 1.38581 * 118.55823 * 179.97438 * 24 23 22 26 26 C 1.38233 * 118.98843 * 359.97438 * 25 24 23 27 27 N 1.31689 * 120.79900 * 0.02562 * 26 25 24 28 28 C 1.32295 * 122.02983 * 0.02562 * 27 26 25 29 29 H 1.08997 * 109.46985 * 59.99978 * 1 2 3 30 30 H 1.09005 * 109.47299 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47235 * 299.99937 * 1 2 3 32 32 H 1.09000 * 109.46914 * 299.99864 * 3 2 1 33 33 H 1.08998 * 109.47321 * 59.99902 * 3 2 1 34 34 H 1.09001 * 109.46538 * 184.99860 * 4 3 2 35 35 H 1.08995 * 109.47350 * 304.99392 * 4 3 2 36 36 H 0.97010 * 119.99673 * 180.02562 * 9 8 6 37 37 H 1.09002 * 109.47134 * 209.99403 * 14 5 4 38 38 H 1.08998 * 109.47660 * 329.99870 * 14 5 4 39 39 H 1.08997 * 109.47376 * 299.99677 * 15 14 5 40 40 H 1.09000 * 109.47191 * 59.99911 * 15 14 5 41 41 H 0.97004 * 120.00246 * 0.02562 * 16 15 14 42 42 H 1.09004 * 110.82289 * 263.49960 * 21 19 17 43 43 H 1.08994 * 110.82897 * 27.05820 * 21 19 17 44 44 H 1.08999 * 110.34793 * 214.86885 * 22 21 19 45 45 H 1.08995 * 110.31870 * 92.76207 * 22 21 19 46 46 H 1.08002 * 120.72921 * 359.97438 * 24 23 22 47 47 H 1.08003 * 120.50821 * 180.02562 * 25 24 23 48 48 H 1.07998 * 119.59563 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5639 -1.2508 6 6 4.2077 -0.7848 -1.3020 7 1 3.9969 -1.3349 -2.2072 8 6 4.7128 -1.4451 -0.1903 9 7 5.3723 -0.7743 0.7301 10 14 4.4565 -3.2857 -0.0008 11 1 5.0761 -3.9927 -1.1503 12 1 5.0882 -3.7460 1.2618 13 1 3.0016 -3.5816 0.0365 14 6 4.1707 1.3862 -2.4477 15 6 5.6135 1.8938 -2.4893 16 7 5.8078 2.7156 -3.6864 17 6 7.0096 3.2732 -3.9332 18 8 7.9305 3.0943 -3.1645 19 6 7.2096 4.1181 -5.1650 20 1 6.5231 4.9646 -5.1575 21 6 8.6693 4.6133 -5.2432 22 6 8.9377 4.6096 -6.7650 23 6 7.9963 3.5697 -7.3301 24 6 8.0002 2.9155 -8.5535 25 6 7.0001 1.9924 -8.8144 26 6 6.0381 1.7565 -7.8502 27 7 6.0656 2.3963 -6.6995 28 6 7.0027 3.2851 -6.4131 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6885 1.8463 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 3.9784 2.1765 0.0902 35 1 3.8507 0.5686 0.8427 36 1 5.7256 -1.2357 1.5068 37 1 3.9705 0.7875 -3.3363 38 1 3.4876 2.2351 -2.4201 39 1 5.8138 2.4925 -1.6008 40 1 6.2966 1.0449 -2.5170 41 1 5.0711 2.8590 -4.3010 42 1 8.7594 5.6200 -4.8349 43 1 9.3403 3.9244 -4.7302 44 1 9.9724 4.3328 -6.9666 45 1 8.7189 5.5890 -7.1903 46 1 8.7661 3.1212 -9.2868 47 1 6.9732 1.4647 -9.7563 48 1 5.2544 1.0388 -8.0431 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701004164.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:18 Heat of formation + Delta-G solvation = -22.231823 kcal Electronic energy + Delta-G solvation = -28715.312142 eV Core-core repulsion = 24771.038937 eV Total energy + Delta-G solvation = -3944.273205 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.10629 -39.03331 -37.24304 -36.24284 -35.56928 -33.97955 -32.86322 -31.29429 -29.70156 -29.44967 -28.51429 -26.91256 -25.63742 -23.76088 -23.67480 -22.59253 -22.01199 -21.25268 -20.09848 -19.57336 -17.31499 -16.89807 -16.65357 -16.44360 -15.70524 -15.55587 -15.23067 -14.96840 -14.65622 -14.53068 -14.49221 -13.95430 -13.70378 -13.65646 -13.50797 -13.26640 -13.08324 -12.88715 -12.52064 -12.06220 -11.87361 -11.78511 -11.70571 -11.65105 -11.20134 -11.04969 -10.90038 -10.72941 -10.63644 -10.37527 -10.07532 -9.97799 -9.88033 -9.66390 -9.61990 -9.38684 -8.85954 -8.81651 -8.41645 -8.33469 -6.56142 -5.67537 -3.18581 0.88447 1.09437 2.93149 3.49572 3.50885 3.54753 3.60257 3.70957 3.81521 4.17250 4.56029 4.63004 4.65424 4.70665 4.73018 4.89131 4.98302 5.11682 5.25548 5.31469 5.39503 5.46785 5.55823 5.59015 5.63072 5.76166 5.79522 5.81540 5.93215 6.00694 6.02209 6.07445 6.09841 6.13628 6.16516 6.28915 6.42337 6.49103 6.63456 6.76556 6.89969 6.96088 7.16529 7.72690 7.82750 7.92842 8.02115 8.09113 8.61194 8.68017 9.27617 9.92211 10.44868 11.35811 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013761 B = 0.002763 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.222690 B =10133.035766 C =10226.511286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.356 6.356 3 C 0.046 3.954 4 C 0.141 3.859 5 N -0.570 5.570 6 C -0.244 4.244 7 H 0.060 0.940 8 C 0.016 3.984 9 N -0.891 5.891 10 Si 0.899 3.101 11 H -0.285 1.285 12 H -0.293 1.293 13 H -0.281 1.281 14 C 0.141 3.859 15 C 0.099 3.901 16 N -0.711 5.711 17 C 0.517 3.483 18 O -0.543 6.543 19 C -0.062 4.062 20 H 0.117 0.883 21 C -0.103 4.103 22 C -0.079 4.079 23 C -0.144 4.144 24 C -0.066 4.066 25 C -0.173 4.173 26 C 0.107 3.893 27 N -0.469 5.469 28 C 0.126 3.874 29 H 0.028 0.972 30 H 0.074 0.926 31 H 0.026 0.974 32 H 0.027 0.973 33 H 0.026 0.974 34 H 0.039 0.961 35 H 0.110 0.890 36 H 0.254 0.746 37 H 0.050 0.950 38 H 0.036 0.964 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.400 0.600 42 H 0.087 0.913 43 H 0.095 0.905 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.132 0.868 47 H 0.137 0.863 48 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.573 12.295 -16.925 20.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.274 6.274 3 C -0.033 4.033 4 C 0.015 3.985 5 N -0.289 5.289 6 C -0.374 4.374 7 H 0.077 0.923 8 C -0.184 4.184 9 N -0.535 5.535 10 Si 0.729 3.271 11 H -0.211 1.211 12 H -0.219 1.219 13 H -0.207 1.207 14 C 0.013 3.987 15 C -0.026 4.026 16 N -0.361 5.361 17 C 0.301 3.699 18 O -0.421 6.421 19 C -0.084 4.084 20 H 0.134 0.866 21 C -0.141 4.141 22 C -0.116 4.116 23 C -0.146 4.146 24 C -0.092 4.092 25 C -0.193 4.193 26 C -0.051 4.051 27 N -0.177 5.177 28 C -0.011 4.011 29 H 0.047 0.953 30 H 0.093 0.907 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.044 0.956 34 H 0.057 0.943 35 H 0.128 0.872 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.234 0.766 42 H 0.106 0.894 43 H 0.114 0.886 44 H 0.099 0.901 45 H 0.103 0.897 46 H 0.150 0.850 47 H 0.155 0.845 48 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 0.752 11.713 -15.562 19.492 hybrid contribution -0.197 -0.535 -0.899 1.065 sum 0.555 11.177 -16.461 19.905 Atomic orbital electron populations 1.22631 0.84243 1.01472 0.98391 1.88211 1.16570 1.27773 1.94823 1.23418 0.98952 0.84057 0.96859 1.21076 0.87245 0.96990 0.93218 1.43673 1.75178 1.04198 1.05898 1.18888 1.36409 0.82416 0.99660 0.92268 1.24981 0.96635 0.97740 0.99002 1.69964 1.35620 1.35492 1.12377 0.86432 0.78136 0.85748 0.76789 1.21131 1.21889 1.20749 1.21064 0.91426 0.93997 0.92218 1.22405 1.01302 0.93831 0.85042 1.46132 1.12201 1.50958 1.26778 1.20056 0.83242 0.80481 0.86150 1.90702 1.41220 1.61456 1.48690 1.20929 1.00356 0.97122 0.90007 0.86566 1.22318 0.93719 1.03005 0.95095 1.21041 0.98482 0.96898 0.95225 1.21431 0.98659 0.99345 0.95205 1.21050 0.97995 0.94588 0.95578 1.22102 0.96236 0.99614 1.01312 1.22684 0.97593 0.96833 0.87965 1.66811 1.24506 1.06060 1.20344 1.21415 0.91128 0.93565 0.95038 0.95322 0.90735 0.95523 0.95523 0.95607 0.94310 0.87249 0.93627 0.93199 0.94563 0.92403 0.91265 0.76616 0.89436 0.88616 0.90052 0.89739 0.85010 0.84527 0.82304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.36 -7.92 10.44 -35.23 -0.37 -8.29 16 3 C 0.05 0.94 6.28 37.16 0.23 1.18 16 4 C 0.14 3.34 5.63 -4.04 -0.02 3.31 16 5 N -0.57 -14.13 2.41 -173.24 -0.42 -14.55 16 6 C -0.24 -6.78 9.28 -15.06 -0.14 -6.92 16 7 H 0.06 1.66 7.92 -52.49 -0.42 1.25 16 8 C 0.02 0.45 4.91 -17.43 -0.09 0.37 16 9 N -0.89 -26.21 11.34 55.49 0.63 -25.58 16 10 Si 0.90 22.67 29.61 -169.99 -5.03 17.64 16 11 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 13 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 14 C 0.14 2.92 5.80 -4.04 -0.02 2.89 16 15 C 0.10 2.08 6.00 -4.04 -0.02 2.06 16 16 N -0.71 -12.13 5.34 -60.29 -0.32 -12.45 16 17 C 0.52 8.85 7.17 -10.98 -0.08 8.77 16 18 O -0.54 -11.49 15.50 5.55 0.09 -11.41 16 19 C -0.06 -0.77 3.25 -91.84 -0.30 -1.07 16 20 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 21 C -0.10 -1.09 6.35 -25.23 -0.16 -1.25 16 22 C -0.08 -0.66 6.77 -26.83 -0.18 -0.84 16 23 C -0.14 -1.53 6.16 -104.21 -0.64 -2.17 16 24 C -0.07 -0.60 10.17 -39.27 -0.40 -1.00 16 25 C -0.17 -1.52 10.12 -39.46 -0.40 -1.92 16 26 C 0.11 1.15 11.18 -17.61 -0.20 0.96 16 27 N -0.47 -6.29 9.72 -9.19 -0.09 -6.38 16 28 C 0.13 1.61 6.59 -82.04 -0.54 1.07 16 29 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 33 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.04 0.86 8.11 -51.93 -0.42 0.44 16 35 H 0.11 2.98 5.34 -51.93 -0.28 2.70 16 36 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.05 1.03 8.04 -51.93 -0.42 0.61 16 38 H 0.04 0.67 8.05 -51.93 -0.42 0.25 16 39 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 40 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 41 H 0.40 5.94 8.01 -40.82 -0.33 5.61 16 42 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.10 1.24 7.04 -51.93 -0.37 0.88 16 44 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 47 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 48 H 0.16 1.35 8.06 -52.49 -0.42 0.92 16 LS Contribution 396.90 15.07 5.98 5.98 Total: -1.00 -34.56 396.90 -9.08 -43.64 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -7.70 Total: 4.34 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: -1.85 Total: 7.06 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: -0.20 Total: -58.96 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.28 Total: -19.69 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.03 Total: 17.64 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.56 -9.08 -43.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701004164.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.404 kcal (2) G-P(sol) polarization free energy of solvation -34.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds