Wall clock time and date at job start Tue Mar 31 2020 17:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99895 * 2 1 4 4 C 1.53002 * 109.46728 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47231 * 65.00121 * 4 3 2 6 6 C 1.36936 * 120.00311 * 264.42497 * 5 4 3 7 7 H 1.08001 * 120.00379 * 146.16686 * 6 5 4 8 8 C 1.38813 * 119.99865 * 326.17426 * 6 5 4 9 9 N 1.31621 * 119.99536 * 337.62648 * 8 6 5 10 10 Si 1.86797 * 120.00302 * 157.62991 * 8 6 5 11 11 H 1.48498 * 109.47047 * 59.99510 * 10 8 6 12 12 H 1.48494 * 109.47290 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.46674 * 299.99669 * 10 8 6 14 14 C 1.46502 * 119.99889 * 84.42552 * 5 4 3 15 15 C 1.53001 * 109.46996 * 90.00221 * 14 5 4 16 16 N 1.46498 * 109.47234 * 179.97438 * 15 14 5 17 17 C 1.34774 * 120.00199 * 179.97438 * 16 15 14 18 18 O 1.21284 * 120.00024 * 0.02562 * 17 16 15 19 19 C 1.50706 * 119.99927 * 179.97438 * 17 16 15 20 20 H 1.08994 * 110.25720 * 59.30471 * 19 17 16 21 21 C 1.54341 * 110.29018 * 181.35441 * 19 17 16 22 22 C 1.54522 * 102.32027 * 145.21908 * 21 19 17 23 23 C 1.51228 * 105.16254 * 333.82464 * 22 21 19 24 24 C 1.38733 * 130.69213 * 197.08132 * 23 22 21 25 25 C 1.38581 * 118.55823 * 179.97438 * 24 23 22 26 26 C 1.38233 * 118.98843 * 359.97438 * 25 24 23 27 27 N 1.31689 * 120.79900 * 0.02562 * 26 25 24 28 28 C 1.32295 * 122.02983 * 0.02562 * 27 26 25 29 29 H 1.08997 * 109.46985 * 59.99978 * 1 2 3 30 30 H 1.09005 * 109.47299 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47235 * 299.99937 * 1 2 3 32 32 H 1.09000 * 109.46914 * 299.99864 * 3 2 1 33 33 H 1.08998 * 109.47321 * 59.99902 * 3 2 1 34 34 H 1.09001 * 109.46538 * 184.99860 * 4 3 2 35 35 H 1.08995 * 109.47350 * 304.99392 * 4 3 2 36 36 H 0.97010 * 119.99673 * 180.02562 * 9 8 6 37 37 H 1.09002 * 109.47134 * 209.99403 * 14 5 4 38 38 H 1.08998 * 109.47660 * 329.99870 * 14 5 4 39 39 H 1.08997 * 109.47376 * 299.99677 * 15 14 5 40 40 H 1.09000 * 109.47191 * 59.99911 * 15 14 5 41 41 H 0.97004 * 120.00246 * 0.02562 * 16 15 14 42 42 H 1.09004 * 110.82289 * 263.49960 * 21 19 17 43 43 H 1.08994 * 110.82897 * 27.05820 * 21 19 17 44 44 H 1.08999 * 110.34793 * 214.86885 * 22 21 19 45 45 H 1.08995 * 110.31870 * 92.76207 * 22 21 19 46 46 H 1.08002 * 120.72921 * 359.97438 * 24 23 22 47 47 H 1.08003 * 120.50821 * 180.02562 * 25 24 23 48 48 H 1.07998 * 119.59563 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5639 -1.2508 6 6 4.2077 -0.7848 -1.3020 7 1 3.9969 -1.3349 -2.2072 8 6 4.7128 -1.4451 -0.1903 9 7 5.3723 -0.7743 0.7301 10 14 4.4565 -3.2857 -0.0008 11 1 5.0761 -3.9927 -1.1503 12 1 5.0882 -3.7460 1.2618 13 1 3.0016 -3.5816 0.0365 14 6 4.1707 1.3862 -2.4477 15 6 5.6135 1.8938 -2.4893 16 7 5.8078 2.7156 -3.6864 17 6 7.0096 3.2732 -3.9332 18 8 7.9305 3.0943 -3.1645 19 6 7.2096 4.1181 -5.1650 20 1 6.5231 4.9646 -5.1575 21 6 8.6693 4.6133 -5.2432 22 6 8.9377 4.6096 -6.7650 23 6 7.9963 3.5697 -7.3301 24 6 8.0002 2.9155 -8.5535 25 6 7.0001 1.9924 -8.8144 26 6 6.0381 1.7565 -7.8502 27 7 6.0656 2.3963 -6.6995 28 6 7.0027 3.2851 -6.4131 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6885 1.8463 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 3.9784 2.1765 0.0902 35 1 3.8507 0.5686 0.8427 36 1 5.7256 -1.2357 1.5068 37 1 3.9705 0.7875 -3.3363 38 1 3.4876 2.2351 -2.4201 39 1 5.8138 2.4925 -1.6008 40 1 6.2966 1.0449 -2.5170 41 1 5.0711 2.8590 -4.3010 42 1 8.7594 5.6200 -4.8349 43 1 9.3403 3.9244 -4.7302 44 1 9.9724 4.3328 -6.9666 45 1 8.7189 5.5890 -7.1903 46 1 8.7661 3.1212 -9.2868 47 1 6.9732 1.4647 -9.7563 48 1 5.2544 1.0388 -8.0431 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701004164.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:17 Heat of formation + Delta-G solvation = -45.855523 kcal Electronic energy + Delta-G solvation = -28716.336543 eV Core-core repulsion = 24771.038937 eV Total energy + Delta-G solvation = -3945.297606 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.99493 -40.33859 -38.90160 -37.54175 -36.90520 -35.64284 -33.73080 -33.26449 -31.21279 -30.32520 -29.74069 -28.46928 -27.11337 -25.58750 -24.44388 -24.05044 -23.14462 -22.25055 -21.85540 -20.90183 -18.79332 -18.37310 -17.74465 -17.42016 -17.21858 -16.92853 -16.65849 -16.39080 -16.32226 -15.83706 -15.69594 -15.49338 -15.30487 -14.90005 -14.57951 -14.50408 -14.26621 -14.06486 -13.69962 -13.52489 -13.43653 -12.99653 -12.89185 -12.71578 -12.59917 -12.54056 -12.45705 -12.37010 -12.26526 -12.00202 -11.95983 -11.79755 -11.52243 -11.08322 -10.63161 -10.47693 -10.33543 -10.24629 -10.00956 -9.67256 -8.60680 -7.80099 -5.34056 0.11181 0.36341 1.45650 1.49910 1.56444 1.59913 2.22453 2.57687 2.82794 2.96379 3.20831 3.34022 3.36220 3.65289 3.81680 3.89895 3.99450 4.11061 4.20725 4.24316 4.30269 4.36231 4.45649 4.47418 4.54380 4.61032 4.61962 4.65520 4.68069 4.74795 4.83675 4.84322 4.91295 4.96503 4.99592 5.07752 5.10752 5.21031 5.23539 5.26875 5.31086 5.53806 5.70112 5.78387 5.80881 6.44063 6.61862 6.66355 7.02610 7.19834 7.29881 7.89022 8.36796 9.19478 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013761 B = 0.002763 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.222690 B =10133.035766 C =10226.511286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.056 3.944 4 C 0.139 3.861 5 N -0.585 5.585 6 C -0.246 4.246 7 H 0.052 0.948 8 C -0.032 4.032 9 N -0.920 5.920 10 Si 0.952 3.048 11 H -0.280 1.280 12 H -0.295 1.295 13 H -0.280 1.280 14 C 0.148 3.852 15 C 0.123 3.877 16 N -0.701 5.701 17 C 0.511 3.489 18 O -0.590 6.590 19 C -0.053 4.053 20 H 0.143 0.857 21 C -0.104 4.104 22 C -0.069 4.069 23 C -0.148 4.148 24 C -0.069 4.069 25 C -0.163 4.163 26 C 0.084 3.916 27 N -0.503 5.503 28 C 0.092 3.908 29 H 0.045 0.955 30 H 0.081 0.919 31 H 0.047 0.953 32 H 0.044 0.956 33 H 0.050 0.950 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.248 0.752 37 H 0.051 0.949 38 H 0.068 0.932 39 H 0.037 0.963 40 H 0.020 0.980 41 H 0.413 0.587 42 H 0.110 0.890 43 H 0.063 0.937 44 H 0.095 0.905 45 H 0.113 0.887 46 H 0.165 0.835 47 H 0.169 0.831 48 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.286 13.686 -19.712 23.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.319 6.319 3 C -0.022 4.022 4 C 0.013 3.987 5 N -0.305 5.305 6 C -0.376 4.376 7 H 0.069 0.931 8 C -0.228 4.228 9 N -0.565 5.565 10 Si 0.781 3.219 11 H -0.206 1.206 12 H -0.221 1.221 13 H -0.206 1.206 14 C 0.021 3.979 15 C -0.004 4.004 16 N -0.352 5.352 17 C 0.298 3.702 18 O -0.471 6.471 19 C -0.075 4.075 20 H 0.161 0.839 21 C -0.142 4.142 22 C -0.106 4.106 23 C -0.150 4.150 24 C -0.095 4.095 25 C -0.182 4.182 26 C -0.073 4.073 27 N -0.212 5.212 28 C -0.045 4.045 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.055 0.945 40 H 0.039 0.961 41 H 0.250 0.750 42 H 0.128 0.872 43 H 0.082 0.918 44 H 0.113 0.887 45 H 0.132 0.868 46 H 0.182 0.818 47 H 0.187 0.813 48 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -0.143 13.128 -18.391 22.596 hybrid contribution 0.038 -0.957 -0.123 0.966 sum -0.105 12.171 -18.514 22.156 Atomic orbital electron populations 1.22828 0.81414 1.02646 1.00163 1.88129 1.19774 1.28776 1.95220 1.23188 0.96250 0.84026 0.98760 1.21002 0.89938 0.96302 0.91489 1.43843 1.75584 1.03851 1.07194 1.19039 1.35260 0.84098 0.99247 0.93068 1.25583 0.97056 1.01047 0.99142 1.70103 1.37063 1.36580 1.12773 0.85589 0.77805 0.81938 0.76574 1.20590 1.22076 1.20631 1.21082 0.91541 0.94540 0.90767 1.21827 1.00345 0.92245 0.85967 1.45938 1.13161 1.50309 1.25764 1.21000 0.82096 0.80046 0.87051 1.90676 1.42560 1.63173 1.50727 1.20988 1.02313 0.96921 0.87264 0.83939 1.22346 0.91652 1.03228 0.96947 1.21063 0.98735 0.97777 0.93042 1.21747 0.98134 0.99676 0.95482 1.21487 0.98578 0.93828 0.95583 1.22479 0.95010 0.98919 1.01837 1.23085 0.98962 0.97290 0.87994 1.66720 1.25577 1.07005 1.21880 1.21495 0.92543 0.94789 0.95713 0.93667 0.90003 0.93468 0.93792 0.93212 0.93600 0.90924 0.94252 0.93049 0.91329 0.94490 0.96145 0.74994 0.87189 0.91801 0.88702 0.86847 0.81763 0.81322 0.80973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.01 113.37 1.25 2.06 16 2 O -0.40 -17.40 10.44 -148.98 -1.56 -18.95 16 3 C 0.06 2.22 6.28 71.98 0.45 2.67 16 4 C 0.14 6.64 5.63 86.38 0.49 7.12 16 5 N -0.58 -29.50 2.41 -702.00 -1.69 -31.20 16 6 C -0.25 -13.99 9.28 84.03 0.78 -13.21 16 7 H 0.05 2.94 7.92 -2.91 -0.02 2.92 16 8 C -0.03 -1.85 4.91 84.86 0.42 -1.43 16 9 N -0.92 -56.23 11.34 21.65 0.25 -55.98 16 10 Si 0.95 47.69 29.61 68.60 2.03 49.72 16 11 H -0.28 -13.63 7.11 99.48 0.71 -12.93 16 12 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 13 H -0.28 -13.84 7.11 99.48 0.71 -13.14 16 14 C 0.15 6.17 5.80 86.38 0.50 6.67 16 15 C 0.12 5.39 6.00 86.38 0.52 5.90 16 16 N -0.70 -24.52 5.34 -463.06 -2.47 -26.99 16 17 C 0.51 18.04 7.17 87.66 0.63 18.66 16 18 O -0.59 -26.35 15.50 -3.04 -0.05 -26.40 16 19 C -0.05 -1.28 3.25 -11.58 -0.04 -1.32 16 20 H 0.14 2.58 8.14 -2.39 -0.02 2.57 16 21 C -0.10 -2.07 6.35 31.57 0.20 -1.87 16 22 C -0.07 -0.96 6.77 30.53 0.21 -0.75 16 23 C -0.15 -2.80 6.16 -19.60 -0.12 -2.92 16 24 C -0.07 -1.02 10.17 22.47 0.23 -0.79 16 25 C -0.16 -2.42 10.12 22.35 0.23 -2.20 16 26 C 0.08 1.71 11.18 84.71 0.95 2.65 16 27 N -0.50 -13.22 9.72 -182.98 -1.78 -14.99 16 28 C 0.09 2.26 6.59 42.72 0.28 2.54 16 29 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 31 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.04 1.57 8.12 -2.39 -0.02 1.55 16 33 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.05 2.06 8.11 -2.39 -0.02 2.04 16 35 H 0.07 4.09 5.34 -2.39 -0.01 4.08 16 36 H 0.25 14.83 8.31 -92.70 -0.77 14.06 16 37 H 0.05 2.13 8.04 -2.39 -0.02 2.11 16 38 H 0.07 2.43 8.05 -2.39 -0.02 2.41 16 39 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.41 12.22 8.01 -92.71 -0.74 11.48 16 42 H 0.11 1.64 8.14 -2.39 -0.02 1.63 16 43 H 0.06 1.70 7.04 -2.39 -0.02 1.68 16 44 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 47 H 0.17 1.33 8.06 -2.91 -0.02 1.30 16 48 H 0.17 2.75 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -79.82 396.90 1.91 -77.91 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: 0.21 Total: 23.10 kcal Atomic # 6 Polarization: 16.82 SS G_CDS: 6.96 Total: 23.78 kcal Atomic # 7 Polarization: -123.46 SS G_CDS: -5.70 Total: -129.16 kcal Atomic # 8 Polarization: -43.75 SS G_CDS: -1.60 Total: -45.35 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.72 kcal Total: -79.82 1.91 -77.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701004164.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.055 kcal (2) G-P(sol) polarization free energy of solvation -79.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds