Wall clock time and date at job start Tue Mar 31 2020 17:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35912 * 116.99923 * 2 1 4 4 C 1.39139 * 120.47348 * 180.02562 * 3 2 1 5 5 C 1.38530 * 118.37765 * 179.97438 * 4 3 2 6 6 C 1.38252 * 119.22183 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.56188 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47499 * 124.97583 * 7 6 5 9 9 O 1.21276 * 119.99705 * 359.97438 * 8 7 6 10 10 N 1.34772 * 119.99944 * 180.02562 * 8 7 6 11 11 C 1.46494 * 120.00053 * 174.55462 * 10 8 7 12 12 C 1.53003 * 110.43685 * 302.99583 * 11 10 8 13 13 N 1.46501 * 109.46482 * 307.76205 * 12 11 10 14 14 C 1.36944 * 119.99358 * 174.95329 * 13 12 11 15 15 H 1.07988 * 120.00497 * 0.02562 * 14 13 12 16 16 C 1.38819 * 119.99586 * 179.97438 * 14 13 12 17 17 N 1.31618 * 119.99921 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99775 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47369 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46785 * 120.00544 * 18 16 14 21 21 H 1.48503 * 109.47203 * 240.00205 * 18 16 14 22 22 C 1.54891 * 110.48855 * 180.45318 * 11 10 8 23 23 C 1.55239 * 102.58739 * 279.18338 * 22 11 10 24 24 C 1.54268 * 104.23424 * 322.08621 * 23 22 11 25 25 C 1.53874 * 106.59896 * 23.61036 * 24 23 22 26 26 N 1.31851 * 120.88562 * 0.02562 * 6 5 4 27 27 C 1.31840 * 121.78126 * 0.02562 * 26 6 5 28 28 H 1.08998 * 109.47177 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47393 * 300.01066 * 1 2 3 30 30 H 1.09006 * 109.46723 * 60.00516 * 1 2 3 31 31 H 1.08010 * 120.81130 * 359.95590 * 4 3 2 32 32 H 1.08002 * 120.39270 * 179.97438 * 5 4 3 33 33 H 1.08999 * 109.47031 * 244.98095 * 7 6 5 34 34 H 1.09002 * 109.46835 * 4.97477 * 7 6 5 35 35 H 0.97001 * 120.00214 * 354.54915 * 10 8 7 36 36 H 1.09002 * 109.47065 * 67.76009 * 12 11 10 37 37 H 1.08992 * 109.47221 * 187.76121 * 12 11 10 38 38 H 0.96994 * 120.00980 * 354.95667 * 13 12 11 39 39 H 0.97001 * 120.00112 * 179.97438 * 17 16 14 40 40 H 1.08998 * 110.75758 * 37.57573 * 22 11 10 41 41 H 1.09001 * 110.75354 * 160.94877 * 22 11 10 42 42 H 1.08998 * 110.47353 * 203.39096 * 23 22 11 43 43 H 1.09012 * 110.46557 * 80.77251 * 23 22 11 44 44 H 1.08996 * 110.02966 * 264.32480 * 24 23 22 45 45 H 1.08999 * 110.03420 * 142.89359 * 24 23 22 46 46 H 1.09010 * 110.02778 * 240.71852 * 25 24 23 47 47 H 1.08996 * 110.03507 * 119.28427 * 25 24 23 48 48 H 1.07996 * 119.66076 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 3.4349 1.2953 -0.0005 5 6 4.0182 2.5518 -0.0011 6 6 3.2080 3.6721 -0.0016 7 6 3.8345 5.0427 -0.0027 8 6 3.3022 5.8374 -1.1673 9 8 2.4942 5.3396 -1.9223 10 7 3.7250 7.1009 -1.3703 11 6 3.3007 7.8319 -2.5668 12 6 3.6913 7.0619 -3.8299 13 7 5.1170 6.7288 -3.7773 14 6 5.6739 5.9476 -4.7545 15 1 5.0625 5.5774 -5.5639 16 6 7.0250 5.6323 -4.7050 17 7 7.7704 6.0839 -3.7186 18 14 7.7846 4.5661 -6.0374 19 1 6.7415 4.1898 -7.0250 20 1 8.8636 5.3229 -6.7217 21 1 8.3529 3.3384 -5.4249 22 6 3.9210 9.2511 -2.5835 23 6 2.9813 10.0423 -1.6344 24 6 1.5755 9.4867 -1.9428 25 6 1.7786 8.0814 -2.5356 26 7 1.8945 3.5574 -0.0011 27 6 1.3003 2.3805 0.0005 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8898 30 1 -0.3633 0.5138 -0.8901 31 1 4.0433 0.4029 -0.0002 32 1 5.0933 2.6551 -0.0011 33 1 3.5905 5.5544 0.9282 34 1 4.9167 4.9474 -0.0921 35 1 4.3103 7.5262 -0.7242 36 1 3.1058 6.1446 -3.8919 37 1 3.4943 7.6786 -4.7068 38 1 5.6664 7.0615 -3.0505 39 1 8.7143 5.8633 -3.6838 40 1 4.9394 9.2322 -2.1953 41 1 3.8975 9.6711 -3.5890 42 1 3.0268 11.1088 -1.8548 43 1 3.2454 9.8552 -0.5934 44 1 1.0712 10.1277 -2.6658 45 1 0.9894 9.4241 -1.0259 46 1 1.3727 8.0404 -3.5465 47 1 1.2910 7.3367 -1.9065 48 1 0.2216 2.3265 0.0012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714140333.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:15 Heat of formation + Delta-G solvation = -53.542226 kcal Electronic energy + Delta-G solvation = -29442.228000 eV Core-core repulsion = 25496.597074 eV Total energy + Delta-G solvation = -3945.630926 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.77628 -41.10332 -39.34772 -38.41043 -36.16837 -34.32282 -33.44271 -33.39275 -32.77735 -29.99620 -29.61372 -28.82616 -27.94645 -26.25772 -24.45699 -23.98641 -23.45781 -21.75518 -21.27304 -20.27420 -19.14583 -19.10588 -18.27653 -17.73956 -17.32385 -16.83512 -16.77643 -16.41620 -16.26688 -15.73897 -15.59948 -15.26406 -15.06835 -15.04459 -14.87288 -14.37574 -14.17579 -14.01572 -13.96701 -13.65348 -13.22780 -13.14031 -12.93139 -12.83248 -12.75519 -12.43634 -12.31877 -12.25743 -12.14483 -12.05091 -11.89127 -11.72826 -11.60586 -11.25930 -11.00321 -10.71538 -10.50968 -10.31286 -9.77113 -9.33123 -8.92187 -7.93579 -5.18891 0.10946 0.30067 1.44203 1.44976 1.54579 1.93955 2.22392 2.36878 2.55882 2.84332 3.33547 3.38993 3.57301 3.65888 3.73150 3.75159 3.91934 4.00187 4.16533 4.21540 4.33037 4.35387 4.38532 4.45203 4.55191 4.56399 4.60135 4.65134 4.68051 4.73351 4.73711 4.87123 4.92267 4.96183 4.98304 5.11915 5.12267 5.15935 5.20744 5.34050 5.38764 5.47931 5.51208 5.55594 5.87350 6.21121 6.29616 6.82931 7.02759 7.37298 7.57499 8.11051 8.42385 9.29190 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.008101 B = 0.004319 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3455.362310 B = 6480.964749 C = 9020.478390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.325 6.325 3 C 0.067 3.933 4 C -0.118 4.118 5 C -0.128 4.128 6 C 0.091 3.909 7 C -0.084 4.084 8 C 0.522 3.478 9 O -0.562 6.562 10 N -0.703 5.703 11 C 0.175 3.825 12 C 0.149 3.851 13 N -0.724 5.724 14 C -0.243 4.243 15 H 0.056 0.944 16 C -0.062 4.062 17 N -0.957 5.957 18 Si 0.962 3.038 19 H -0.279 1.279 20 H -0.288 1.288 21 H -0.291 1.291 22 C -0.116 4.116 23 C -0.112 4.112 24 C -0.114 4.114 25 C -0.118 4.118 26 N -0.448 5.448 27 C 0.010 3.990 28 H 0.126 0.874 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.160 0.840 32 H 0.159 0.841 33 H 0.134 0.866 34 H 0.120 0.880 35 H 0.408 0.592 36 H 0.010 0.990 37 H 0.014 0.986 38 H 0.379 0.621 39 H 0.252 0.748 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.057 0.943 47 H 0.056 0.944 48 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.856 -1.276 13.875 18.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.237 6.237 3 C 0.019 3.981 4 C -0.144 4.144 5 C -0.148 4.148 6 C -0.047 4.047 7 C -0.124 4.124 8 C 0.308 3.692 9 O -0.439 6.439 10 N -0.355 5.355 11 C 0.088 3.912 12 C 0.021 3.979 13 N -0.367 5.367 14 C -0.376 4.376 15 H 0.074 0.926 16 C -0.255 4.255 17 N -0.608 5.608 18 Si 0.792 3.208 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.218 1.218 22 C -0.154 4.154 23 C -0.149 4.149 24 C -0.152 4.152 25 C -0.158 4.158 26 N -0.157 5.157 27 C -0.149 4.149 28 H 0.144 0.856 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.178 0.822 32 H 0.176 0.824 33 H 0.152 0.848 34 H 0.138 0.862 35 H 0.244 0.756 36 H 0.028 0.972 37 H 0.031 0.969 38 H 0.213 0.787 39 H 0.061 0.939 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.102 0.898 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.089 0.911 46 H 0.076 0.924 47 H 0.074 0.926 48 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -13.885 -1.190 13.162 19.169 hybrid contribution 1.282 -1.245 -0.694 1.917 sum -12.604 -2.435 12.467 17.895 Atomic orbital electron populations 1.23410 0.76159 1.06032 1.02321 1.86045 1.23661 1.25480 1.88522 1.20162 0.93558 0.86082 0.98283 1.21165 0.92055 0.99291 1.01866 1.22091 1.02378 0.91618 0.98670 1.20726 0.89270 0.95379 0.99340 1.20594 1.01826 0.91086 0.98880 1.20554 0.80671 0.81718 0.86209 1.90650 1.34598 1.70480 1.48203 1.45679 1.51667 1.13963 1.24215 1.21195 0.94478 0.91576 0.83935 1.21054 0.85356 0.96282 0.95160 1.42195 1.04673 1.60684 1.29191 1.19506 0.92555 1.22803 1.02696 0.92586 1.25300 0.96653 1.02867 1.00638 1.69762 1.06017 1.51167 1.33874 0.85248 0.78120 0.78390 0.79056 1.20400 1.21496 1.21785 1.22746 0.99300 0.92162 1.01184 1.22412 0.93415 0.99829 0.99275 1.22089 0.97785 0.94335 1.00942 1.22357 0.94232 0.98184 1.00989 1.67250 1.12148 1.27287 1.09046 1.23148 1.01321 0.86894 1.03499 0.85574 0.91165 0.92308 0.82213 0.82355 0.84789 0.86165 0.75585 0.97168 0.96856 0.78740 0.93927 0.91093 0.90789 0.89786 0.90457 0.90861 0.91092 0.92418 0.92555 0.81016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.82 113.37 1.11 1.33 16 2 O -0.32 -7.47 10.51 -92.56 -0.97 -8.45 16 3 C 0.07 1.79 6.71 22.60 0.15 1.94 16 4 C -0.12 -3.12 10.13 22.56 0.23 -2.89 16 5 C -0.13 -3.60 9.70 22.34 0.22 -3.39 16 6 C 0.09 2.89 5.76 42.56 0.25 3.13 16 7 C -0.08 -2.36 6.10 29.10 0.18 -2.18 16 8 C 0.52 18.69 7.00 87.66 0.61 19.30 16 9 O -0.56 -25.02 12.30 -3.02 -0.04 -25.06 16 10 N -0.70 -22.11 4.54 -418.07 -1.90 -24.01 16 11 C 0.17 5.88 0.39 4.68 0.00 5.89 16 12 C 0.15 6.73 4.72 86.38 0.41 7.13 16 13 N -0.72 -37.65 5.30 -343.45 -1.82 -39.48 16 14 C -0.24 -14.26 9.99 84.03 0.84 -13.42 16 15 H 0.06 3.34 7.83 -2.92 -0.02 3.31 16 16 C -0.06 -3.57 5.50 84.86 0.47 -3.11 16 17 N -0.96 -56.98 13.06 21.65 0.28 -56.69 16 18 Si 0.96 47.32 29.55 68.60 2.03 49.35 16 19 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 20 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 21 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 22 C -0.12 -3.25 5.67 32.01 0.18 -3.07 16 23 C -0.11 -2.28 6.80 31.79 0.22 -2.06 16 24 C -0.11 -2.51 6.80 31.32 0.21 -2.30 16 25 C -0.12 -3.62 5.68 31.32 0.18 -3.44 16 26 N -0.45 -14.93 9.22 -183.49 -1.69 -16.62 16 27 C 0.01 0.29 10.22 84.80 0.87 1.15 16 28 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.07 0.81 7.68 -2.39 -0.02 0.80 16 30 H 0.06 0.84 7.68 -2.38 -0.02 0.82 16 31 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 32 H 0.16 3.80 7.95 -2.91 -0.02 3.77 16 33 H 0.13 2.82 8.14 -2.39 -0.02 2.80 16 34 H 0.12 3.13 7.87 -2.39 -0.02 3.11 16 35 H 0.41 10.31 8.50 -92.71 -0.79 9.52 16 36 H 0.01 0.54 6.49 -2.39 -0.02 0.52 16 37 H 0.01 0.62 8.02 -2.39 -0.02 0.60 16 38 H 0.38 19.85 7.27 -92.71 -0.67 19.18 16 39 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 40 H 0.07 2.06 8.10 -2.39 -0.02 2.04 16 41 H 0.07 2.19 7.97 -2.39 -0.02 2.17 16 42 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 44 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.06 1.84 7.84 -2.38 -0.02 1.82 16 47 H 0.06 1.94 6.63 -2.39 -0.02 1.93 16 48 H 0.17 3.90 6.32 -2.91 -0.02 3.88 16 Total: -1.00 -77.75 388.15 1.53 -76.22 By element: Atomic # 1 Polarization: 41.20 SS G_CDS: -0.48 Total: 40.72 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 6.12 Total: 4.02 kcal Atomic # 7 Polarization: -131.68 SS G_CDS: -5.13 Total: -136.80 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -1.01 Total: -33.50 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -77.75 1.53 -76.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714140333.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.676 kcal (2) G-P(sol) polarization free energy of solvation -77.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds