Wall clock time and date at job start Tue Mar 31 2020 17:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35492 * 116.99879 * 2 1 4 4 C 1.39173 * 119.52582 * 179.97438 * 3 2 1 5 5 C 1.37952 * 119.26233 * 179.74023 * 4 3 2 6 6 C 1.40281 * 118.35859 * 0.53854 * 5 4 3 7 7 C 1.47611 * 120.49789 * 179.73269 * 6 5 4 8 8 O 1.21589 * 120.00357 * 33.30892 * 7 6 5 9 9 N 1.34782 * 119.99906 * 213.30845 * 7 6 5 10 10 C 1.46917 * 120.63156 * 6.02524 * 9 7 6 11 11 C 1.53193 * 108.77792 * 233.63302 * 10 9 7 12 12 C 1.53042 * 109.31351 * 305.36743 * 11 10 9 13 13 C 1.53036 * 109.53708 * 61.36242 * 12 11 10 14 14 C 1.46927 * 120.63105 * 186.05197 * 9 7 6 15 15 H 1.09000 * 109.58520 * 246.15709 * 14 9 7 16 16 C 1.53007 * 109.70571 * 6.50973 * 14 9 7 17 17 C 1.52994 * 109.47424 * 177.80817 * 16 14 9 18 18 N 1.46500 * 109.47027 * 174.80657 * 17 16 14 19 19 C 1.36938 * 119.99556 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00679 * 0.02562 * 19 18 17 21 21 C 1.38823 * 119.99528 * 179.97438 * 19 18 17 22 22 N 1.31610 * 120.00173 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99710 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47242 * 60.00184 * 23 21 19 25 25 H 1.48496 * 109.46920 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47059 * 300.00479 * 23 21 19 27 27 C 1.39523 * 119.00181 * 359.46150 * 6 5 4 28 28 N 1.31659 * 120.62824 * 0.27450 * 27 6 5 29 29 H 1.09002 * 109.46868 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47518 * 300.00427 * 1 2 3 31 31 H 1.08996 * 109.46601 * 60.00649 * 1 2 3 32 32 H 1.08000 * 120.36498 * 0.02562 * 4 3 2 33 33 H 1.08004 * 120.82461 * 180.27436 * 5 4 3 34 34 H 1.09003 * 109.58614 * 113.84450 * 10 9 7 35 35 H 1.09004 * 109.70604 * 353.48824 * 10 9 7 36 36 H 1.09005 * 109.49820 * 185.41243 * 11 10 9 37 37 H 1.09003 * 109.52760 * 65.33288 * 11 10 9 38 38 H 1.09003 * 109.45431 * 301.34122 * 12 11 10 39 39 H 1.08999 * 109.46222 * 181.38538 * 12 11 10 40 40 H 1.08999 * 109.49516 * 178.68803 * 13 12 11 41 41 H 1.08998 * 109.50231 * 58.58985 * 13 12 11 42 42 H 1.09002 * 109.46794 * 297.81437 * 16 14 9 43 43 H 1.09002 * 109.46946 * 57.80275 * 16 14 9 44 44 H 1.09000 * 109.47215 * 294.80721 * 17 16 14 45 45 H 1.08999 * 109.46805 * 54.80716 * 17 16 14 46 46 H 0.96994 * 120.00153 * 359.97438 * 18 17 16 47 47 H 0.97002 * 120.00342 * 179.97438 * 22 21 19 48 48 H 1.08001 * 119.68670 * 180.29534 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2073 0.0000 4 6 3.4345 1.2686 0.0005 5 6 4.0551 2.5006 -0.0049 6 6 3.2524 3.6511 0.0008 7 6 3.8668 4.9932 0.0012 8 8 4.9177 5.1811 -0.5808 9 7 3.2629 6.0106 0.6468 10 6 2.0647 5.7731 1.4632 11 6 0.9556 6.7224 0.9990 12 6 1.4709 8.1628 1.0433 13 6 2.6615 8.3098 0.0932 14 6 3.7900 7.3785 0.5471 15 1 4.1594 7.6996 1.5211 16 6 4.9299 7.4191 -0.4726 17 6 5.4383 8.8553 -0.6125 18 7 6.6086 8.8755 -1.4935 19 6 7.2388 10.0599 -1.7676 20 1 6.8735 10.9791 -1.3341 21 6 8.3481 10.0790 -2.6020 22 7 8.7938 8.9588 -3.1300 23 14 9.2074 11.6947 -2.9765 24 1 9.6992 12.2986 -1.7122 25 1 10.3547 11.4460 -3.8859 26 1 8.2510 12.6242 -3.6297 27 6 1.8646 3.5076 0.0002 28 7 1.3139 2.3117 -0.0002 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5137 -0.8900 32 1 4.0210 0.3617 0.0005 33 1 5.1324 2.5776 -0.0091 34 1 2.2934 5.9633 2.5118 35 1 1.7363 4.7407 1.3422 36 1 0.0931 6.6241 1.6583 37 1 0.6644 6.4715 -0.0209 38 1 1.7844 8.4052 2.0587 39 1 0.6758 8.8425 0.7370 40 1 3.0133 9.3414 0.1077 41 1 2.3549 8.0437 -0.9184 42 1 5.7432 6.7771 -0.1341 43 1 4.5666 7.0666 -1.4380 44 1 4.6523 9.4791 -1.0381 45 1 5.7157 9.2397 0.3691 46 1 6.9375 8.0499 -1.8820 47 1 9.5687 8.9721 -3.7133 48 1 1.2360 4.3859 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715445459.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:31 Heat of formation + Delta-G solvation = 5.074174 kcal Electronic energy + Delta-G solvation = -28965.329817 eV Core-core repulsion = 25022.240689 eV Total energy + Delta-G solvation = -3943.089128 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.41712 -40.25876 -38.22905 -37.38712 -35.21465 -33.32910 -32.94041 -32.74773 -31.12729 -30.36994 -27.94143 -27.76851 -25.50446 -24.21970 -23.98286 -23.64474 -22.26988 -21.14890 -20.60975 -19.44160 -18.82917 -17.71471 -17.27153 -16.76650 -16.44978 -16.15071 -15.49688 -15.11719 -14.81972 -14.61434 -14.48078 -14.15446 -14.09950 -14.00190 -13.64313 -13.50469 -13.25197 -13.09025 -12.97164 -12.67951 -12.63678 -12.24986 -12.08131 -11.60244 -11.39104 -11.19506 -11.07532 -10.91090 -10.78839 -10.73760 -10.43709 -10.39492 -10.25520 -10.11734 -9.95579 -9.57447 -8.96805 -8.79776 -8.68609 -8.54915 -6.77410 -5.63595 -2.91738 0.47696 0.84046 2.65280 2.69582 2.85667 3.45886 3.50906 3.54354 3.56258 3.82319 4.25559 4.44934 4.54500 4.62774 4.68407 4.70187 4.75525 4.79502 4.91257 4.92878 4.98930 5.16478 5.17006 5.22513 5.24221 5.36020 5.46054 5.54555 5.60116 5.66909 5.69660 5.75010 5.83829 5.94062 5.94628 6.00157 6.12878 6.24355 6.39087 6.41792 6.58741 6.68401 6.77063 7.09173 7.19273 7.34287 7.39925 7.79268 8.20522 8.55450 9.65745 10.28026 10.62774 11.59314 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016536 B = 0.002595 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.895961 B =10785.694646 C =12194.356205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.305 6.305 3 C 0.334 3.666 4 C -0.194 4.194 5 C 0.013 3.987 6 C -0.218 4.218 7 C 0.562 3.438 8 O -0.505 6.505 9 N -0.604 5.604 10 C 0.082 3.918 11 C -0.138 4.138 12 C -0.119 4.119 13 C -0.134 4.134 14 C 0.154 3.846 15 H 0.073 0.927 16 C -0.118 4.118 17 C 0.149 3.851 18 N -0.731 5.731 19 C -0.237 4.237 20 H 0.068 0.932 21 C -0.017 4.017 22 N -0.933 5.933 23 Si 0.907 3.093 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.287 1.287 27 C 0.162 3.838 28 N -0.544 5.544 29 H 0.097 0.903 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.149 0.851 33 H 0.154 0.846 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.093 0.907 43 H 0.067 0.933 44 H 0.015 0.985 45 H 0.013 0.987 46 H 0.385 0.615 47 H 0.255 0.745 48 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.079 -16.207 12.030 29.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.211 6.211 3 C 0.156 3.844 4 C -0.214 4.214 5 C -0.012 4.012 6 C -0.224 4.224 7 C 0.349 3.651 8 O -0.381 6.381 9 N -0.338 5.338 10 C -0.041 4.041 11 C -0.176 4.176 12 C -0.157 4.157 13 C -0.172 4.172 14 C 0.052 3.948 15 H 0.091 0.909 16 C -0.155 4.155 17 C 0.021 3.979 18 N -0.375 5.375 19 C -0.368 4.368 20 H 0.086 0.914 21 C -0.213 4.213 22 N -0.582 5.582 23 Si 0.738 3.262 24 H -0.214 1.214 25 H -0.217 1.217 26 H -0.214 1.214 27 C 0.005 3.995 28 N -0.267 5.267 29 H 0.115 0.885 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.167 0.833 33 H 0.172 0.828 34 H 0.089 0.911 35 H 0.115 0.885 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.111 0.889 43 H 0.085 0.915 44 H 0.033 0.967 45 H 0.030 0.970 46 H 0.219 0.781 47 H 0.064 0.936 48 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -22.260 -16.308 11.705 29.974 hybrid contribution 1.075 0.830 -0.332 1.398 sum -21.185 -15.478 11.373 28.596 Atomic orbital electron populations 1.22914 0.76881 1.03157 1.02707 1.86219 1.23241 1.24497 1.87148 1.20084 0.89527 0.84706 0.90087 1.21053 0.91825 0.99667 1.08876 1.21536 1.01307 0.89648 0.88741 1.20962 0.95106 0.95350 1.10944 1.17983 0.84518 0.83395 0.79224 1.90966 1.21364 1.82417 1.43336 1.48025 1.28809 1.08072 1.48849 1.22346 0.85380 1.00992 0.95336 1.21958 0.97564 0.95900 1.02152 1.21529 0.98156 0.95794 1.00213 1.22077 0.94918 1.00633 0.99580 1.21344 0.94094 0.79264 1.00129 0.90904 1.22248 0.97237 0.97836 0.98215 1.20784 0.90036 0.93613 0.93497 1.42351 1.31391 1.07860 1.55909 1.19199 1.07571 0.87048 1.23026 0.91373 1.24754 0.99040 0.96871 1.00604 1.69669 1.26955 1.24953 1.36574 0.86273 0.79053 0.83208 0.77689 1.21358 1.21739 1.21375 1.22995 0.91911 0.94043 0.90507 1.67359 1.40461 0.98558 1.20349 0.88473 0.92086 0.92041 0.83318 0.82805 0.91096 0.88471 0.90620 0.91359 0.91724 0.91587 0.89770 0.91334 0.88870 0.91458 0.96701 0.96970 0.78083 0.93561 0.80775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.37 101.05 1.05 1.29 16 2 O -0.30 -2.82 10.46 -18.17 -0.19 -3.01 16 3 C 0.33 3.42 7.49 -16.96 -0.13 3.29 16 4 C -0.19 -1.84 10.02 -39.34 -0.39 -2.23 16 5 C 0.01 0.14 9.73 -38.92 -0.38 -0.24 16 6 C -0.22 -2.52 5.46 -104.83 -0.57 -3.09 16 7 C 0.56 7.95 7.25 -12.43 -0.09 7.86 16 8 O -0.51 -9.30 12.42 5.29 0.07 -9.23 16 9 N -0.60 -7.31 2.97 -166.41 -0.49 -7.81 16 10 C 0.08 0.68 5.53 -3.72 -0.02 0.66 16 11 C -0.14 -0.99 5.75 -26.61 -0.15 -1.14 16 12 C -0.12 -1.02 5.88 -26.69 -0.16 -1.18 16 13 C -0.13 -1.58 4.81 -26.61 -0.13 -1.71 16 14 C 0.15 2.13 3.03 -67.59 -0.20 1.92 16 15 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 16 C -0.12 -2.19 3.30 -26.73 -0.09 -2.28 16 17 C 0.15 3.22 5.71 -4.04 -0.02 3.20 16 18 N -0.73 -20.17 5.60 -59.91 -0.34 -20.50 16 19 C -0.24 -7.03 9.99 -15.05 -0.15 -7.18 16 20 H 0.07 1.94 7.83 -52.49 -0.41 1.52 16 21 C -0.02 -0.51 5.50 -17.43 -0.10 -0.61 16 22 N -0.93 -29.80 13.06 55.49 0.72 -29.08 16 23 Si 0.91 23.30 29.55 -169.99 -5.02 18.28 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 27 C 0.16 1.60 8.58 -17.15 -0.15 1.45 16 28 N -0.54 -5.57 9.18 -12.97 -0.12 -5.69 16 29 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.37 8.10 -51.93 -0.42 -0.05 16 31 H 0.06 0.40 8.10 -51.93 -0.42 -0.02 16 32 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.15 1.56 8.03 -52.48 -0.42 1.14 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.10 0.73 3.53 -51.93 -0.18 0.54 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.51 7.65 -51.93 -0.40 0.11 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 1.05 6.85 -51.93 -0.36 0.69 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.09 1.96 6.26 -51.93 -0.33 1.64 16 43 H 0.07 1.37 7.23 -51.93 -0.38 1.00 16 44 H 0.02 0.32 6.83 -51.93 -0.35 -0.03 16 45 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 46 H 0.39 11.39 7.67 -40.82 -0.31 11.08 16 47 H 0.25 7.83 8.31 -40.82 -0.34 7.49 16 48 H 0.18 1.40 5.02 -52.49 -0.26 1.14 16 LS Contribution 377.57 15.07 5.69 5.69 Total: -1.00 -35.52 377.57 -8.55 -44.07 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -7.18 Total: 7.26 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -1.68 Total: 0.02 kcal Atomic # 7 Polarization: -62.85 SS G_CDS: -0.22 Total: -63.08 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -0.12 Total: -12.24 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -5.02 Total: 18.28 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.52 -8.55 -44.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715445459.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.143 kcal (2) G-P(sol) polarization free energy of solvation -35.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds