Wall clock time and date at job start Tue Mar 31 2020 17:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35492 * 116.99879 * 2 1 4 4 C 1.39173 * 119.52582 * 179.97438 * 3 2 1 5 5 C 1.37952 * 119.26233 * 179.74023 * 4 3 2 6 6 C 1.40281 * 118.35859 * 0.53854 * 5 4 3 7 7 C 1.47611 * 120.49789 * 179.73269 * 6 5 4 8 8 O 1.21589 * 120.00357 * 33.30892 * 7 6 5 9 9 N 1.34782 * 119.99906 * 213.30845 * 7 6 5 10 10 C 1.46917 * 120.63156 * 6.02524 * 9 7 6 11 11 C 1.53193 * 108.77792 * 233.63302 * 10 9 7 12 12 C 1.53042 * 109.31351 * 305.36743 * 11 10 9 13 13 C 1.53036 * 109.53708 * 61.36242 * 12 11 10 14 14 C 1.46927 * 120.63105 * 186.05197 * 9 7 6 15 15 H 1.09000 * 109.58520 * 246.15709 * 14 9 7 16 16 C 1.53007 * 109.70571 * 6.50973 * 14 9 7 17 17 C 1.52994 * 109.47424 * 177.80817 * 16 14 9 18 18 N 1.46500 * 109.47027 * 174.80657 * 17 16 14 19 19 C 1.36938 * 119.99556 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00679 * 0.02562 * 19 18 17 21 21 C 1.38823 * 119.99528 * 179.97438 * 19 18 17 22 22 N 1.31610 * 120.00173 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99710 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47242 * 60.00184 * 23 21 19 25 25 H 1.48496 * 109.46920 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47059 * 300.00479 * 23 21 19 27 27 C 1.39523 * 119.00181 * 359.46150 * 6 5 4 28 28 N 1.31659 * 120.62824 * 0.27450 * 27 6 5 29 29 H 1.09002 * 109.46868 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47518 * 300.00427 * 1 2 3 31 31 H 1.08996 * 109.46601 * 60.00649 * 1 2 3 32 32 H 1.08000 * 120.36498 * 0.02562 * 4 3 2 33 33 H 1.08004 * 120.82461 * 180.27436 * 5 4 3 34 34 H 1.09003 * 109.58614 * 113.84450 * 10 9 7 35 35 H 1.09004 * 109.70604 * 353.48824 * 10 9 7 36 36 H 1.09005 * 109.49820 * 185.41243 * 11 10 9 37 37 H 1.09003 * 109.52760 * 65.33288 * 11 10 9 38 38 H 1.09003 * 109.45431 * 301.34122 * 12 11 10 39 39 H 1.08999 * 109.46222 * 181.38538 * 12 11 10 40 40 H 1.08999 * 109.49516 * 178.68803 * 13 12 11 41 41 H 1.08998 * 109.50231 * 58.58985 * 13 12 11 42 42 H 1.09002 * 109.46794 * 297.81437 * 16 14 9 43 43 H 1.09002 * 109.46946 * 57.80275 * 16 14 9 44 44 H 1.09000 * 109.47215 * 294.80721 * 17 16 14 45 45 H 1.08999 * 109.46805 * 54.80716 * 17 16 14 46 46 H 0.96994 * 120.00153 * 359.97438 * 18 17 16 47 47 H 0.97002 * 120.00342 * 179.97438 * 22 21 19 48 48 H 1.08001 * 119.68670 * 180.29534 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2073 0.0000 4 6 3.4345 1.2686 0.0005 5 6 4.0551 2.5006 -0.0049 6 6 3.2524 3.6511 0.0008 7 6 3.8668 4.9932 0.0012 8 8 4.9177 5.1811 -0.5808 9 7 3.2629 6.0106 0.6468 10 6 2.0647 5.7731 1.4632 11 6 0.9556 6.7224 0.9990 12 6 1.4709 8.1628 1.0433 13 6 2.6615 8.3098 0.0932 14 6 3.7900 7.3785 0.5471 15 1 4.1594 7.6996 1.5211 16 6 4.9299 7.4191 -0.4726 17 6 5.4383 8.8553 -0.6125 18 7 6.6086 8.8755 -1.4935 19 6 7.2388 10.0599 -1.7676 20 1 6.8735 10.9791 -1.3341 21 6 8.3481 10.0790 -2.6020 22 7 8.7938 8.9588 -3.1300 23 14 9.2074 11.6947 -2.9765 24 1 9.6992 12.2986 -1.7122 25 1 10.3547 11.4460 -3.8859 26 1 8.2510 12.6242 -3.6297 27 6 1.8646 3.5076 0.0002 28 7 1.3139 2.3117 -0.0002 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5137 -0.8900 32 1 4.0210 0.3617 0.0005 33 1 5.1324 2.5776 -0.0091 34 1 2.2934 5.9633 2.5118 35 1 1.7363 4.7407 1.3422 36 1 0.0931 6.6241 1.6583 37 1 0.6644 6.4715 -0.0209 38 1 1.7844 8.4052 2.0587 39 1 0.6758 8.8425 0.7370 40 1 3.0133 9.3414 0.1077 41 1 2.3549 8.0437 -0.9184 42 1 5.7432 6.7771 -0.1341 43 1 4.5666 7.0666 -1.4380 44 1 4.6523 9.4791 -1.0381 45 1 5.7157 9.2397 0.3691 46 1 6.9375 8.0499 -1.8820 47 1 9.5687 8.9721 -3.7133 48 1 1.2360 4.3859 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715445459.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:30 Heat of formation + Delta-G solvation = -20.502228 kcal Electronic energy + Delta-G solvation = -28966.438893 eV Core-core repulsion = 25022.240689 eV Total energy + Delta-G solvation = -3944.198204 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.30557 -41.16604 -39.01218 -38.40585 -36.98290 -34.77946 -33.91228 -33.69454 -32.67385 -31.51712 -29.37035 -28.38255 -26.76820 -25.53672 -24.85343 -24.72405 -23.71034 -22.08993 -21.99023 -20.39287 -19.54626 -19.24298 -18.41587 -18.05331 -17.34027 -17.05878 -16.66598 -16.23377 -16.06552 -15.74242 -15.60193 -15.30182 -15.20058 -14.93548 -14.80604 -14.77070 -14.49326 -14.25426 -14.16819 -13.87484 -13.53510 -13.32185 -12.92316 -12.79720 -12.76211 -12.63316 -12.35354 -12.19604 -12.16484 -11.92562 -11.86008 -11.76435 -11.55407 -11.37516 -11.08360 -10.95478 -10.89646 -10.15550 -9.69699 -9.50457 -9.01086 -7.94502 -5.25263 -0.36249 0.04630 1.44755 1.50145 1.56283 1.68248 1.85482 2.01248 2.55769 2.61139 3.09473 3.34226 3.37526 3.67403 3.74005 3.83851 3.90074 3.97908 4.00892 4.06879 4.14020 4.25621 4.40913 4.44535 4.45761 4.49972 4.51574 4.56676 4.65320 4.71873 4.73264 4.79687 4.80868 4.93156 4.94131 5.00984 5.12886 5.16404 5.20778 5.25996 5.38647 5.41197 5.49542 5.50942 5.69546 6.06896 6.26362 6.37195 6.56286 7.13202 7.30920 8.08493 8.32468 9.29569 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016536 B = 0.002595 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.895961 B =10785.694646 C =12194.356205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.311 6.311 3 C 0.330 3.670 4 C -0.191 4.191 5 C 0.005 3.995 6 C -0.233 4.233 7 C 0.557 3.443 8 O -0.562 6.562 9 N -0.599 5.599 10 C 0.078 3.922 11 C -0.133 4.133 12 C -0.114 4.114 13 C -0.130 4.130 14 C 0.159 3.841 15 H 0.082 0.918 16 C -0.096 4.096 17 C 0.149 3.851 18 N -0.749 5.749 19 C -0.248 4.248 20 H 0.080 0.920 21 C -0.083 4.083 22 N -0.974 5.974 23 Si 0.982 3.018 24 H -0.274 1.274 25 H -0.295 1.295 26 H -0.275 1.275 27 C 0.173 3.827 28 N -0.545 5.545 29 H 0.124 0.876 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.169 0.831 33 H 0.150 0.850 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.055 0.945 42 H 0.064 0.936 43 H 0.041 0.959 44 H 0.026 0.974 45 H 0.020 0.980 46 H 0.369 0.631 47 H 0.251 0.749 48 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.827 -15.944 13.648 32.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.217 6.217 3 C 0.152 3.848 4 C -0.211 4.211 5 C -0.020 4.020 6 C -0.239 4.239 7 C 0.345 3.655 8 O -0.442 6.442 9 N -0.331 5.331 10 C -0.043 4.043 11 C -0.171 4.171 12 C -0.151 4.151 13 C -0.169 4.169 14 C 0.056 3.944 15 H 0.100 0.900 16 C -0.134 4.134 17 C 0.022 3.978 18 N -0.391 5.391 19 C -0.380 4.380 20 H 0.097 0.903 21 C -0.275 4.275 22 N -0.625 5.625 23 Si 0.810 3.190 24 H -0.200 1.200 25 H -0.221 1.221 26 H -0.200 1.200 27 C 0.016 3.984 28 N -0.269 5.269 29 H 0.142 0.858 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.186 0.814 33 H 0.168 0.832 34 H 0.105 0.895 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.060 0.940 44 H 0.044 0.956 45 H 0.038 0.962 46 H 0.200 0.800 47 H 0.060 0.940 48 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -25.096 -16.036 13.383 32.651 hybrid contribution 1.835 0.650 -0.790 2.101 sum -23.261 -15.386 12.593 30.600 Atomic orbital electron populations 1.23168 0.75259 1.05015 1.02740 1.86223 1.24875 1.23899 1.86751 1.20310 0.89898 0.85113 0.89505 1.21219 0.91984 0.99813 1.08113 1.21603 1.01317 0.90117 0.88970 1.20796 0.96013 0.94001 1.13060 1.18424 0.83938 0.84606 0.78483 1.90945 1.23925 1.83417 1.45915 1.48100 1.29645 1.06823 1.48563 1.22645 0.84048 1.02131 0.95440 1.21979 0.97865 0.94334 1.02923 1.21515 0.96802 0.97192 0.99636 1.22025 0.95601 0.99308 0.99916 1.21177 0.93395 0.81056 0.98797 0.89991 1.21928 0.98165 0.94855 0.98452 1.20966 0.88403 0.95831 0.92573 1.42647 1.32958 1.06747 1.56794 1.19683 1.07685 0.88010 1.22621 0.90251 1.25739 1.00134 1.00765 1.00868 1.69868 1.27501 1.27532 1.37581 0.85087 0.77582 0.78663 0.77674 1.20035 1.22094 1.20041 1.23201 0.91174 0.94659 0.89381 1.67433 1.40348 0.98565 1.20604 0.85824 0.91705 0.92288 0.81351 0.83234 0.89540 0.87399 0.87357 0.91485 0.90651 0.90139 0.90527 0.92667 0.91778 0.93989 0.95637 0.96206 0.79967 0.94004 0.78835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.37 113.37 1.18 1.51 16 2 O -0.31 -5.19 10.46 -87.93 -0.92 -6.11 16 3 C 0.33 6.27 7.49 84.83 0.64 6.91 16 4 C -0.19 -3.48 10.02 22.43 0.22 -3.25 16 5 C 0.01 0.12 9.73 22.70 0.22 0.34 16 6 C -0.23 -5.40 5.46 -20.00 -0.11 -5.51 16 7 C 0.56 16.36 7.25 86.72 0.63 16.99 16 8 O -0.56 -22.38 12.42 -4.00 -0.05 -22.43 16 9 N -0.60 -14.27 2.97 -798.65 -2.37 -16.64 16 10 C 0.08 1.10 5.53 86.36 0.48 1.58 16 11 C -0.13 -1.43 5.75 30.67 0.18 -1.26 16 12 C -0.11 -1.60 5.88 30.62 0.18 -1.42 16 13 C -0.13 -2.94 4.81 30.67 0.15 -2.80 16 14 C 0.16 4.38 3.03 44.98 0.14 4.52 16 15 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 16 C -0.10 -3.78 3.30 30.59 0.10 -3.68 16 17 C 0.15 6.64 5.71 86.38 0.49 7.13 16 18 N -0.75 -42.93 5.60 -343.46 -1.92 -44.85 16 19 C -0.25 -14.96 9.99 84.04 0.84 -14.12 16 20 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 21 C -0.08 -5.12 5.50 84.87 0.47 -4.65 16 22 N -0.97 -64.21 13.06 21.65 0.28 -63.93 16 23 Si 0.98 48.42 29.55 68.60 2.03 50.45 16 24 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 25 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 26 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 27 C 0.17 3.17 8.58 85.03 0.73 3.90 16 28 N -0.55 -10.23 9.18 -307.82 -2.82 -13.05 16 29 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.63 8.10 -2.39 -0.02 0.61 16 31 H 0.06 0.65 8.10 -2.39 -0.02 0.63 16 32 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 33 H 0.15 3.29 8.03 -2.91 -0.02 3.26 16 34 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.11 1.32 3.53 -2.39 -0.01 1.32 16 36 H 0.11 0.58 8.14 -2.38 -0.02 0.56 16 37 H 0.07 0.78 7.65 -2.39 -0.02 0.76 16 38 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.08 1.83 6.85 -2.39 -0.02 1.82 16 41 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.06 2.92 6.26 -2.39 -0.01 2.90 16 43 H 0.04 1.84 7.23 -2.39 -0.02 1.82 16 44 H 0.03 1.10 6.83 -2.39 -0.02 1.08 16 45 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.37 23.12 7.67 -92.71 -0.71 22.41 16 47 H 0.25 15.93 8.31 -92.71 -0.77 15.16 16 48 H 0.20 2.66 5.02 -2.91 -0.01 2.65 16 Total: -1.00 -80.11 377.57 1.01 -79.10 By element: Atomic # 1 Polarization: 31.01 SS G_CDS: 0.27 Total: 31.28 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: 6.52 Total: 6.19 kcal Atomic # 7 Polarization: -131.64 SS G_CDS: -6.84 Total: -138.48 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.97 Total: -28.54 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 2.03 Total: 50.45 kcal Total: -80.11 1.01 -79.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715445459.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.595 kcal (2) G-P(sol) polarization free energy of solvation -80.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds