Wall clock time and date at job start Tue Mar 31 2020 17:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35665 * 117.00071 * 2 1 4 4 C 1.39290 * 119.62009 * 179.97438 * 3 2 1 5 5 C 1.38326 * 119.30645 * 180.02562 * 4 3 2 6 6 C 1.38778 * 118.56033 * 0.02562 * 5 4 3 7 7 C 1.39127 * 119.19191 * 0.02562 * 6 5 4 8 8 C 1.48147 * 119.69523 * 179.97438 * 7 6 5 9 9 O 1.21524 * 119.99930 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00246 * 180.02562 * 8 7 6 11 11 C 1.46494 * 120.00106 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47008 * 324.99143 * 11 10 8 13 13 C 1.53003 * 109.47672 * 84.99461 * 11 10 8 14 14 C 1.52994 * 109.46945 * 59.99777 * 13 11 10 15 15 C 1.53005 * 109.47099 * 60.00218 * 14 13 11 16 16 C 1.52996 * 109.47324 * 299.99749 * 15 14 13 17 17 C 1.53004 * 109.47171 * 204.99747 * 11 10 8 18 18 H 1.08999 * 109.47217 * 179.97438 * 17 11 10 19 19 C 1.52996 * 109.47336 * 59.99365 * 17 11 10 20 20 N 1.46498 * 109.47059 * 175.00083 * 19 17 11 21 21 C 1.36943 * 119.99752 * 179.72430 * 20 19 17 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 19 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 19 24 24 N 1.31611 * 120.00081 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99814 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47483 * 90.00178 * 25 23 21 27 27 H 1.48498 * 109.47011 * 210.00042 * 25 23 21 28 28 H 1.48502 * 109.47495 * 329.99664 * 25 23 21 29 29 N 1.31903 * 119.61724 * 0.29662 * 3 2 1 30 30 H 1.09006 * 109.47382 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47463 * 299.99814 * 1 2 3 32 32 H 1.09005 * 109.47029 * 60.00490 * 1 2 3 33 33 H 1.08004 * 120.34444 * 0.02562 * 4 3 2 34 34 H 1.07995 * 120.71883 * 179.97438 * 5 4 3 35 35 H 1.08003 * 120.40544 * 180.02562 * 6 5 4 36 36 H 0.97000 * 120.00211 * 359.97438 * 10 8 7 37 37 H 1.08995 * 109.46731 * 300.00266 * 13 11 10 38 38 H 1.08994 * 109.46929 * 180.02562 * 13 11 10 39 39 H 1.09000 * 109.47864 * 300.00473 * 14 13 11 40 40 H 1.09001 * 109.47328 * 180.02562 * 14 13 11 41 41 H 1.09005 * 109.47165 * 179.97438 * 15 14 13 42 42 H 1.08999 * 109.46900 * 60.00147 * 15 14 13 43 43 H 1.09000 * 109.47017 * 300.00357 * 16 15 14 44 44 H 1.08995 * 109.47011 * 179.97438 * 16 15 14 45 45 H 1.09004 * 109.47066 * 55.00351 * 19 17 11 46 46 H 1.08994 * 109.46974 * 295.00498 * 19 17 11 47 47 H 0.97001 * 120.00384 * 0.02562 * 20 19 17 48 48 H 0.97008 * 120.00329 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4363 1.2724 0.0005 5 6 4.0576 2.5083 0.0011 6 6 3.2665 3.6486 0.0016 7 6 1.8818 3.5137 0.0021 8 6 1.0266 4.7235 0.0033 9 8 1.5353 5.8271 0.0042 10 7 -0.3155 4.6001 0.0043 11 6 -1.1611 5.7964 0.0048 12 1 -0.6830 6.5789 0.5940 13 6 -1.3538 6.2855 -1.4320 14 6 -2.0249 5.1870 -2.2589 15 6 -3.3865 4.8488 -1.6483 16 6 -3.1938 4.3597 -0.2115 17 6 -2.5226 5.4582 0.6155 18 1 -3.1516 6.3484 0.6163 19 6 -2.3299 4.9691 2.0523 20 7 -3.6386 4.7591 2.6763 21 6 -3.7173 4.3136 3.9688 22 1 -2.8145 4.1212 4.5295 23 6 -4.9573 4.1091 4.5582 24 7 -5.0329 3.6813 5.8006 25 14 -6.5187 4.4410 3.5880 26 1 -6.9308 3.2052 2.8752 27 1 -7.5988 4.8603 4.5168 28 1 -6.2678 5.5216 2.6008 29 7 1.3191 2.3102 0.0059 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 4.0240 0.3663 0.0005 34 1 5.1349 2.5843 0.0019 35 1 3.7202 4.6287 0.0016 36 1 -0.7216 3.7192 0.0039 37 1 -0.3839 6.5263 -1.8670 38 1 -1.9826 7.1758 -1.4314 39 1 -1.3958 4.2969 -2.2594 40 1 -2.1619 5.5352 -3.2827 41 1 -3.8648 4.0665 -2.2377 42 1 -4.0156 5.7389 -1.6479 43 1 -2.5645 3.4696 -0.2120 44 1 -4.1637 4.1192 0.2236 45 1 -1.7730 5.7156 2.6186 46 1 -1.7759 4.0305 2.0453 47 1 -4.4495 4.9315 2.1725 48 1 -5.8994 3.5388 6.2126 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716521798.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:25 Heat of formation + Delta-G solvation = -34.030306 kcal Electronic energy + Delta-G solvation = -29587.985800 eV Core-core repulsion = 25643.200974 eV Total energy + Delta-G solvation = -3944.784826 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.11930 -40.10588 -38.52774 -37.59475 -34.84764 -33.87715 -32.77878 -31.96077 -31.13940 -30.10258 -29.68532 -27.54275 -25.62499 -24.75610 -23.16879 -22.81907 -22.17905 -21.35703 -20.65288 -19.03199 -18.85745 -17.93486 -17.57684 -16.30049 -16.28104 -16.18207 -15.76011 -15.39345 -14.98750 -14.62575 -14.41255 -14.37127 -14.13869 -13.90786 -13.63056 -13.51592 -13.27055 -12.89857 -12.78733 -12.51463 -12.29530 -12.12870 -11.96545 -11.79336 -11.61897 -11.36944 -11.09877 -10.98811 -10.81053 -10.59673 -10.45739 -10.27842 -10.26331 -10.05044 -9.92922 -9.76777 -9.57360 -9.01661 -8.88459 -8.76545 -7.22421 -5.76551 -3.11859 0.42013 0.98272 2.65099 2.81279 3.05874 3.35871 3.38099 3.44163 3.65647 3.85063 4.55870 4.58501 4.67788 4.72147 4.72763 4.79166 4.83087 4.98729 5.10642 5.12898 5.19265 5.21008 5.22942 5.48091 5.50523 5.53699 5.54602 5.56347 5.63871 5.65523 5.72931 5.78921 5.83658 5.97679 6.03070 6.05977 6.10697 6.16370 6.25042 6.38470 6.46767 6.51740 6.70384 6.77041 6.92077 7.30713 7.61066 8.00213 8.15821 8.42371 9.21721 9.93862 10.13971 11.42059 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010626 B = 0.003699 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.397408 B = 7567.970215 C = 8642.237822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.307 6.307 3 C 0.322 3.678 4 C -0.169 4.169 5 C -0.048 4.048 6 C -0.150 4.150 7 C 0.123 3.877 8 C 0.570 3.430 9 O -0.534 6.534 10 N -0.693 5.693 11 C 0.153 3.847 12 H 0.092 0.908 13 C -0.128 4.128 14 C -0.116 4.116 15 C -0.121 4.121 16 C -0.113 4.113 17 C -0.106 4.106 18 H 0.086 0.914 19 C 0.164 3.836 20 N -0.754 5.754 21 C -0.242 4.242 22 H 0.089 0.911 23 C 0.004 3.996 24 N -0.935 5.935 25 Si 0.883 3.117 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.277 1.277 29 N -0.515 5.515 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.410 0.590 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.072 0.928 45 H 0.026 0.974 46 H 0.027 0.973 47 H 0.360 0.640 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.792 -3.095 -19.062 24.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.213 6.213 3 C 0.141 3.859 4 C -0.190 4.190 5 C -0.073 4.073 6 C -0.171 4.171 7 C -0.014 4.014 8 C 0.354 3.646 9 O -0.410 6.410 10 N -0.345 5.345 11 C 0.048 3.952 12 H 0.110 0.890 13 C -0.167 4.167 14 C -0.154 4.154 15 C -0.158 4.158 16 C -0.151 4.151 17 C -0.125 4.125 18 H 0.105 0.895 19 C 0.036 3.964 20 N -0.400 5.400 21 C -0.372 4.372 22 H 0.106 0.894 23 C -0.191 4.191 24 N -0.583 5.583 25 Si 0.714 3.286 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.203 1.203 29 N -0.242 5.242 30 H 0.117 0.883 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.164 0.836 34 H 0.167 0.833 35 H 0.169 0.831 36 H 0.248 0.752 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.044 0.956 46 H 0.045 0.955 47 H 0.194 0.806 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 14.361 -2.689 -18.812 23.820 hybrid contribution -0.809 -0.189 -0.456 0.948 sum 13.551 -2.879 -19.268 23.732 Atomic orbital electron populations 1.22962 0.76513 1.03462 1.02980 1.86241 1.23436 1.23978 1.87673 1.19779 0.89414 0.84487 0.92260 1.21298 0.92012 0.99916 1.05762 1.21441 1.00900 0.90818 0.94190 1.21989 0.93053 1.00866 1.01230 1.20843 0.92245 0.90254 0.98076 1.17832 0.82511 0.87271 0.76947 1.90780 1.74034 1.25770 1.50458 1.45967 1.05148 1.10997 1.72375 1.21024 0.90416 0.87394 0.96362 0.88998 1.21906 1.01061 0.98564 0.95128 1.21494 0.96582 0.98862 0.98467 1.21587 0.96884 1.01087 0.96274 1.21560 1.01553 0.97732 0.94224 1.21687 0.94807 0.99852 0.96178 0.89528 1.20626 0.88698 0.97732 0.89304 1.42707 1.01909 1.81984 1.13381 1.19057 0.94418 1.36101 0.87632 0.89355 1.24660 0.97049 1.01405 0.96023 1.69701 1.23892 1.52328 1.12372 0.86563 0.84549 0.78032 0.79483 1.21102 1.21747 1.20320 1.67165 1.41057 0.98240 1.17770 0.88324 0.91525 0.92186 0.83608 0.83331 0.83144 0.75173 0.91546 0.90859 0.92170 0.92356 0.92180 0.91922 0.92177 0.90948 0.95574 0.95499 0.80649 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.38 101.05 1.05 1.39 16 2 O -0.31 -3.42 10.48 -18.69 -0.20 -3.62 16 3 C 0.32 3.70 7.49 -17.13 -0.13 3.57 16 4 C -0.17 -1.51 10.05 -39.16 -0.39 -1.90 16 5 C -0.05 -0.39 10.16 -39.35 -0.40 -0.79 16 6 C -0.15 -1.57 9.63 -39.05 -0.38 -1.95 16 7 C 0.12 1.57 6.75 -83.02 -0.56 1.01 16 8 C 0.57 8.12 7.78 -12.19 -0.09 8.03 16 9 O -0.53 -8.70 15.98 5.34 0.09 -8.61 16 10 N -0.69 -9.23 3.61 -54.65 -0.20 -9.43 16 11 C 0.15 2.03 2.23 -67.93 -0.15 1.88 16 12 H 0.09 1.35 7.58 -51.93 -0.39 0.96 16 13 C -0.13 -1.46 5.60 -26.73 -0.15 -1.61 16 14 C -0.12 -1.21 5.77 -26.73 -0.15 -1.37 16 15 C -0.12 -1.33 5.92 -26.73 -0.16 -1.49 16 16 C -0.11 -1.52 4.91 -26.73 -0.13 -1.65 16 17 C -0.11 -1.55 2.02 -90.62 -0.18 -1.74 16 18 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 19 C 0.16 3.14 5.42 -4.04 -0.02 3.12 16 20 N -0.75 -17.69 5.13 -59.91 -0.31 -17.99 16 21 C -0.24 -6.89 10.47 -15.06 -0.16 -7.04 16 22 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 23 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 24 N -0.93 -29.51 13.97 55.49 0.78 -28.73 16 25 Si 0.88 21.98 27.74 -169.99 -4.71 17.26 16 26 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 28 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 29 N -0.52 -6.48 8.39 -9.87 -0.08 -6.56 16 30 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 32 H 0.06 0.55 8.11 -51.93 -0.42 0.13 16 33 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 34 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.15 1.47 7.63 -52.48 -0.40 1.06 16 36 H 0.41 5.36 6.00 -40.82 -0.24 5.12 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.65 7.60 -51.93 -0.39 0.26 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.79 6.50 -51.93 -0.34 0.45 16 44 H 0.07 1.10 7.18 -51.93 -0.37 0.73 16 45 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.03 0.53 7.61 -51.93 -0.40 0.14 16 47 H 0.36 8.18 4.71 -40.82 -0.19 7.98 16 48 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 384.71 15.07 5.80 5.80 Total: -1.00 -33.47 384.71 -8.34 -41.81 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -7.39 Total: 10.57 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -2.11 Total: -0.50 kcal Atomic # 7 Polarization: -62.90 SS G_CDS: 0.19 Total: -62.72 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -0.11 Total: -12.23 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.71 Total: 17.26 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.47 -8.34 -41.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716521798.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.781 kcal (2) G-P(sol) polarization free energy of solvation -33.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds