Wall clock time and date at job start Tue Mar 31 2020 17:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35680 * 116.99798 * 2 1 4 4 C 1.38923 * 119.68589 * 180.02562 * 3 2 1 5 5 C 1.38372 * 119.11556 * 179.76879 * 4 3 2 6 6 C 1.38828 * 118.48191 * 0.44798 * 5 4 3 7 7 C 1.50702 * 120.35306 * 179.79960 * 6 5 4 8 8 C 1.52995 * 109.47549 * 269.72394 * 7 6 5 9 9 C 1.50698 * 109.47203 * 179.97438 * 8 7 6 10 10 O 1.21278 * 120.00124 * 0.02562 * 9 8 7 11 11 N 1.34782 * 119.99984 * 180.02562 * 9 8 7 12 12 C 1.47417 * 125.64806 * 354.65825 * 11 9 8 13 13 C 1.54688 * 104.94273 * 204.07214 * 12 11 9 14 14 C 1.55154 * 101.67535 * 323.27704 * 13 12 11 15 15 C 1.47019 * 125.64755 * 174.96278 * 11 9 8 16 16 H 1.08998 * 109.88717 * 59.48771 * 15 11 9 17 17 C 1.53002 * 109.88320 * 298.32496 * 15 11 9 18 18 N 1.46497 * 109.47228 * 175.13734 * 17 15 11 19 19 C 1.36939 * 120.00012 * 184.93057 * 18 17 15 20 20 H 1.07998 * 120.00176 * 354.78621 * 19 18 17 21 21 C 1.38817 * 119.99710 * 174.78778 * 19 18 17 22 22 N 1.31621 * 119.99775 * 184.66217 * 21 19 18 23 23 Si 1.86795 * 120.00191 * 4.65589 * 21 19 18 24 24 H 1.48506 * 109.46969 * 94.47009 * 23 21 19 25 25 H 1.48500 * 109.47261 * 214.46706 * 23 21 19 26 26 H 1.48503 * 109.47343 * 334.47137 * 23 21 19 27 27 C 1.38045 * 119.29012 * 359.53566 * 6 5 4 28 28 N 1.31960 * 120.83545 * 0.24122 * 27 6 5 29 29 H 1.09001 * 109.47043 * 59.99751 * 1 2 3 30 30 H 1.08991 * 109.46764 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47137 * 300.00398 * 1 2 3 32 32 H 1.08010 * 120.44035 * 359.97438 * 4 3 2 33 33 H 1.08004 * 120.76046 * 180.25611 * 5 4 3 34 34 H 1.09005 * 109.46725 * 149.72732 * 7 6 5 35 35 H 1.09002 * 109.47288 * 29.73120 * 7 6 5 36 36 H 1.08997 * 109.47464 * 300.00164 * 8 7 6 37 37 H 1.09005 * 109.46832 * 60.00402 * 8 7 6 38 38 H 1.09000 * 110.36690 * 323.00285 * 12 11 9 39 39 H 1.09004 * 110.36950 * 85.32401 * 12 11 9 40 40 H 1.09003 * 111.10560 * 205.10588 * 13 12 11 41 41 H 1.08999 * 110.85233 * 81.33605 * 13 12 11 42 42 H 1.09011 * 110.72036 * 276.97014 * 14 13 12 43 43 H 1.09005 * 110.72188 * 153.69948 * 14 13 12 44 44 H 1.09009 * 109.46787 * 295.13263 * 17 15 11 45 45 H 1.08997 * 109.47226 * 55.13259 * 17 15 11 46 46 H 0.97003 * 120.00036 * 4.92739 * 18 17 15 47 47 H 0.96995 * 120.00287 * 180.02562 * 22 21 19 48 48 H 1.08009 * 119.58085 * 180.27409 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2741 -0.0005 5 6 4.0485 2.5132 -0.0054 6 6 3.2504 3.6492 -0.0001 7 6 3.8768 5.0199 -0.0005 8 6 4.0887 5.4843 1.4418 9 6 4.7156 6.8547 1.4412 10 8 4.9676 7.4059 0.3907 11 7 4.9963 7.4678 2.6082 12 6 4.6442 6.9659 3.9489 13 6 4.6008 8.2244 4.8473 14 6 5.7656 9.0671 4.2637 15 6 5.6986 8.7511 2.7547 16 1 5.1488 9.5361 2.2356 17 6 7.1135 8.6380 2.1834 18 7 7.7643 9.9497 2.2278 19 6 9.0059 10.1171 1.6749 20 1 9.5411 9.2656 1.2814 21 6 9.5765 11.3814 1.6201 22 7 10.7280 11.5577 1.0074 23 14 8.7102 12.8325 2.4158 24 1 9.2364 13.0300 3.7904 25 1 8.9547 14.0567 1.6116 26 1 7.2510 12.5643 2.4782 27 6 1.8771 3.5097 0.0001 28 7 1.3186 2.3141 0.0001 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 4.0229 0.3696 -0.0005 33 1 5.1254 2.5948 -0.0101 34 1 3.2182 5.7200 -0.5146 35 1 4.8372 4.9803 -0.5144 36 1 3.1283 5.5239 1.9556 37 1 4.7473 4.7841 1.9558 38 1 3.6685 6.4804 3.9280 39 1 5.4060 6.2733 4.3068 40 1 4.7878 7.9688 5.8903 41 1 3.6495 8.7455 4.7395 42 1 6.7201 8.7479 4.6826 43 1 5.6006 10.1295 4.4430 44 1 7.6889 7.9267 2.7761 45 1 7.0619 8.2928 1.1508 46 1 7.3158 10.6997 2.6488 47 1 11.1270 12.4410 0.9694 48 1 1.2517 4.3903 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723919458.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:31 Heat of formation + Delta-G solvation = -23.333081 kcal Electronic energy + Delta-G solvation = -27869.018106 eV Core-core repulsion = 23924.697147 eV Total energy + Delta-G solvation = -3944.320959 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.00417 -40.14625 -38.45676 -37.54850 -34.71949 -34.34729 -32.55669 -31.82704 -31.44425 -29.99327 -29.04943 -27.62634 -25.43251 -25.01489 -23.78584 -22.91764 -21.92034 -21.75296 -20.50105 -18.95975 -18.74407 -17.61959 -17.48250 -17.04803 -16.48306 -16.33116 -15.43004 -15.31907 -14.86822 -14.75653 -14.48706 -14.41084 -13.97592 -13.82119 -13.63634 -13.48351 -13.24433 -13.06893 -12.84693 -12.63269 -12.47359 -12.44908 -12.25187 -11.87053 -11.67136 -11.46425 -11.33734 -11.24900 -11.17988 -10.91030 -10.67567 -10.50684 -10.20807 -10.07616 -9.94798 -9.70928 -9.57105 -8.82715 -8.69803 -8.51507 -7.18440 -5.73099 -3.08255 0.80009 0.92418 2.72217 2.74702 2.98579 3.38757 3.40161 3.42646 3.47039 3.97115 4.27474 4.49952 4.57460 4.61067 4.61841 4.64360 4.78627 4.83454 4.85775 4.93371 4.94334 5.00004 5.06923 5.22888 5.25776 5.27695 5.32220 5.40978 5.47892 5.54877 5.57574 5.63271 5.66245 5.75975 5.82178 5.90134 5.93713 5.99370 6.06669 6.12551 6.26051 6.39852 6.72626 6.87268 6.89031 7.49901 7.61443 8.04416 8.27841 8.45641 9.25067 9.97013 10.17530 11.45324 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022217 B = 0.002065 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.008721 B =13558.094776 C =14283.769365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.311 6.311 3 C 0.311 3.689 4 C -0.187 4.187 5 C -0.036 4.036 6 C -0.167 4.167 7 C -0.057 4.057 8 C -0.129 4.129 9 C 0.524 3.476 10 O -0.527 6.527 11 N -0.614 5.614 12 C 0.101 3.899 13 C -0.134 4.134 14 C -0.126 4.126 15 C 0.126 3.874 16 H 0.075 0.925 17 C 0.151 3.849 18 N -0.752 5.752 19 C -0.240 4.240 20 H 0.089 0.911 21 C 0.003 3.997 22 N -0.933 5.933 23 Si 0.886 3.114 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.277 1.277 27 C 0.142 3.858 28 N -0.539 5.539 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.022 0.978 45 H 0.043 0.957 46 H 0.361 0.639 47 H 0.259 0.741 48 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.216 -21.374 5.130 31.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.218 6.218 3 C 0.133 3.867 4 C -0.207 4.207 5 C -0.062 4.062 6 C -0.169 4.169 7 C -0.096 4.096 8 C -0.169 4.169 9 C 0.312 3.688 10 O -0.403 6.403 11 N -0.349 5.349 12 C -0.023 4.023 13 C -0.172 4.172 14 C -0.164 4.164 15 C 0.023 3.977 16 H 0.094 0.906 17 C 0.023 3.977 18 N -0.399 5.399 19 C -0.370 4.370 20 H 0.107 0.893 21 C -0.192 4.192 22 N -0.581 5.581 23 Si 0.717 3.283 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.203 1.203 27 C -0.013 4.013 28 N -0.262 5.262 29 H 0.077 0.923 30 H 0.113 0.887 31 H 0.077 0.923 32 H 0.159 0.841 33 H 0.162 0.838 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.040 0.960 45 H 0.062 0.938 46 H 0.194 0.806 47 H 0.069 0.931 48 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -22.706 -21.538 4.338 31.595 hybrid contribution 0.151 1.255 0.637 1.416 sum -22.555 -20.283 4.976 30.739 Atomic orbital electron populations 1.22845 0.77241 1.02885 1.02475 1.86235 1.22921 1.24670 1.87939 1.19867 0.89477 0.84696 0.92710 1.21085 0.91975 0.99626 1.08031 1.21414 1.00818 0.90673 0.93261 1.20780 0.94709 0.96512 1.04907 1.20212 1.02375 0.91384 0.95605 1.21646 1.02179 0.94171 0.98892 1.20281 0.78790 0.87265 0.82447 1.90773 1.52798 1.66361 1.30333 1.48545 1.57627 1.23076 1.05689 1.22266 1.00323 0.97051 0.82618 1.22750 0.99483 0.95838 0.99129 1.22727 0.99189 1.00767 0.93765 1.21837 0.94456 0.85156 0.96232 0.90649 1.20908 0.88831 0.88909 0.99033 1.42607 1.19370 1.06751 1.71124 1.19034 0.91497 0.94975 1.31510 0.89331 1.24675 0.97150 0.96873 1.00530 1.69717 1.18881 1.22333 1.47216 0.86507 0.79078 0.83496 0.79242 1.21180 1.21705 1.20348 1.22338 0.92304 0.93549 0.93142 1.67319 1.40922 0.98801 1.19171 0.92311 0.88686 0.92320 0.84088 0.83836 0.89760 0.89600 0.89135 0.88876 0.90841 0.91255 0.89877 0.90829 0.89693 0.90174 0.95989 0.93849 0.80618 0.93117 0.82358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.38 101.05 1.05 1.32 16 2 O -0.31 -2.93 10.48 -18.74 -0.20 -3.13 16 3 C 0.31 3.10 7.49 -17.12 -0.13 2.98 16 4 C -0.19 -1.59 10.04 -39.28 -0.39 -1.98 16 5 C -0.04 -0.29 9.85 -39.31 -0.39 -0.68 16 6 C -0.17 -1.41 5.15 -104.47 -0.54 -1.94 16 7 C -0.06 -0.53 4.66 -27.88 -0.13 -0.66 16 8 C -0.13 -1.17 4.78 -27.89 -0.13 -1.30 16 9 C 0.52 7.30 7.57 -10.98 -0.08 7.21 16 10 O -0.53 -9.78 15.16 5.56 0.08 -9.70 16 11 N -0.61 -8.17 3.07 -163.16 -0.50 -8.67 16 12 C 0.10 0.92 6.64 -2.65 -0.02 0.90 16 13 C -0.13 -1.21 7.07 -24.70 -0.17 -1.39 16 14 C -0.13 -1.64 6.09 -24.90 -0.15 -1.79 16 15 C 0.13 2.05 2.92 -66.95 -0.20 1.85 16 16 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 17 C 0.15 3.15 5.66 -4.04 -0.02 3.13 16 18 N -0.75 -18.53 5.26 -59.91 -0.31 -18.84 16 19 C -0.24 -7.05 10.47 -15.06 -0.16 -7.20 16 20 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 21 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 22 N -0.93 -29.93 13.97 55.49 0.78 -29.16 16 23 Si 0.89 22.42 27.92 -169.99 -4.75 17.67 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 26 H -0.28 -6.55 6.26 56.52 0.35 -6.20 16 27 C 0.14 1.24 10.85 -17.57 -0.19 1.05 16 28 N -0.54 -5.44 9.22 -13.33 -0.12 -5.57 16 29 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 32 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 33 H 0.14 0.89 8.06 -52.48 -0.42 0.46 16 34 H 0.08 0.81 8.05 -51.93 -0.42 0.40 16 35 H 0.09 0.89 8.05 -51.93 -0.42 0.47 16 36 H 0.09 0.65 7.76 -51.93 -0.40 0.24 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.50 7.51 -51.93 -0.39 0.11 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.08 1.17 7.77 -51.92 -0.40 0.76 16 43 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.02 0.46 8.03 -51.92 -0.42 0.04 16 45 H 0.04 1.03 6.89 -51.93 -0.36 0.67 16 46 H 0.36 8.52 5.20 -40.82 -0.21 8.30 16 47 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 48 H 0.16 1.06 8.06 -52.48 -0.42 0.64 16 LS Contribution 393.67 15.07 5.93 5.93 Total: -1.00 -36.55 393.67 -8.54 -45.08 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -7.69 Total: 4.88 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -1.75 Total: 1.50 kcal Atomic # 7 Polarization: -62.07 SS G_CDS: -0.16 Total: -62.24 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -0.11 Total: -12.83 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.75 Total: 17.67 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.55 -8.54 -45.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723919458.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.747 kcal (2) G-P(sol) polarization free energy of solvation -36.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds