Wall clock time and date at job start Tue Mar 31 2020 17:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34777 * 120.00046 * 2 1 4 4 O 1.21489 * 119.99939 * 175.82983 * 3 2 1 5 5 C 1.48332 * 120.00005 * 355.83867 * 3 2 1 6 6 N 1.31494 * 127.15515 * 5.88724 * 5 3 2 7 7 O 1.21428 * 111.53086 * 179.97438 * 6 5 3 8 8 C 1.33193 * 111.56354 * 359.96619 * 7 6 5 9 9 C 1.35376 * 106.63665 * 359.79881 * 8 7 6 10 10 C 1.50068 * 124.93867 * 180.02562 * 9 8 7 11 11 C 1.53540 * 108.22849 * 344.10875 * 10 9 8 12 12 C 1.53114 * 109.50542 * 49.20097 * 11 10 9 13 13 C 1.50599 * 129.60201 * 180.18685 * 8 7 6 14 14 C 1.46498 * 119.99977 * 180.02562 * 2 1 3 15 15 H 1.09002 * 109.46970 * 180.02562 * 14 2 1 16 16 C 1.52997 * 109.47256 * 59.99727 * 14 2 1 17 17 N 1.46501 * 109.46880 * 55.00058 * 16 14 2 18 18 C 1.36945 * 119.99941 * 179.97438 * 17 16 14 19 19 H 1.07997 * 119.99639 * 0.02562 * 18 17 16 20 20 C 1.38810 * 120.00073 * 179.97438 * 18 17 16 21 21 N 1.31614 * 120.00169 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00002 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47155 * 89.99464 * 22 20 18 24 24 H 1.48500 * 109.47113 * 210.00208 * 22 20 18 25 25 H 1.48499 * 109.46753 * 329.99622 * 22 20 18 26 26 C 1.52998 * 109.47038 * 299.99534 * 14 2 1 27 27 C 1.53005 * 117.49749 * 116.25419 * 26 14 2 28 28 C 1.53001 * 117.49848 * 184.91265 * 26 14 2 29 29 H 1.09004 * 109.47141 * 275.67019 * 1 2 3 30 30 H 1.08999 * 109.47481 * 35.67017 * 1 2 3 31 31 H 1.09002 * 109.47489 * 155.67129 * 1 2 3 32 32 H 1.09000 * 109.70786 * 103.79173 * 10 9 8 33 33 H 1.08995 * 109.71042 * 224.37944 * 10 9 8 34 34 H 1.08999 * 109.46874 * 169.21028 * 11 10 9 35 35 H 1.09002 * 109.46822 * 289.19490 * 11 10 9 36 36 H 1.09001 * 109.42900 * 50.22130 * 12 11 10 37 37 H 1.09007 * 109.42435 * 170.10869 * 12 11 10 38 38 H 1.08998 * 109.69710 * 282.94085 * 13 8 7 39 39 H 1.09005 * 109.69415 * 43.52505 * 13 8 7 40 40 H 1.08999 * 109.47393 * 174.99641 * 16 14 2 41 41 H 1.09002 * 109.47125 * 295.00043 * 16 14 2 42 42 H 0.97000 * 120.00243 * 359.97438 * 17 16 14 43 43 H 0.96997 * 120.00704 * 180.02562 * 21 20 18 44 44 H 1.08995 * 115.55563 * 330.58704 * 26 14 2 45 45 H 1.08997 * 117.50279 * 215.00531 * 27 26 14 46 46 H 1.08999 * 117.49802 * 0.02562 * 27 26 14 47 47 H 1.09004 * 117.50173 * 359.97438 * 28 26 14 48 48 H 1.09001 * 117.49716 * 145.00512 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3513 1.1686 0.0765 5 6 1.4001 2.4501 -0.0932 6 7 0.0962 2.6190 -0.0737 7 8 -0.2027 3.7921 -0.1684 8 6 0.8770 4.5662 -0.2636 9 6 1.9501 3.7424 -0.2147 10 6 3.3808 4.1894 -0.2883 11 6 3.4073 5.6298 -0.8192 12 6 2.4093 6.4833 -0.0318 13 6 0.9765 6.0633 -0.3929 14 6 2.1975 -1.2687 -0.0006 15 1 3.2691 -1.0695 0.0000 16 6 1.8278 -2.0705 -1.2501 17 7 2.0706 -1.2553 -2.4429 18 6 1.8112 -1.7669 -3.6864 19 1 1.4272 -2.7713 -3.7876 20 6 2.0407 -0.9944 -4.8165 21 7 1.7909 -1.4859 -6.0116 22 14 2.7041 0.7431 -4.6413 23 1 4.1886 0.7109 -4.6656 24 1 2.2084 1.5779 -5.7649 25 1 2.2426 1.3215 -3.3538 26 6 1.8279 -2.0715 1.2484 27 6 1.1140 -3.4091 1.0428 28 6 2.5770 -3.3831 1.4924 29 1 -0.3634 0.1015 1.0227 30 1 -0.3634 0.8348 -0.5992 31 1 -0.3634 -0.9364 -0.4234 32 1 3.8280 4.1554 0.7052 33 1 3.9353 3.5377 -0.9635 34 1 4.4095 6.0419 -0.7018 35 1 3.1346 5.6331 -1.8745 36 1 2.5750 6.3421 1.0363 37 1 2.5519 7.5339 -0.2850 38 1 0.7440 6.3600 -1.4157 39 1 0.2779 6.5387 0.2957 40 1 2.4376 -2.9728 -1.2965 41 1 0.7741 -2.3459 -1.2065 42 1 2.4151 -0.3531 -2.3519 43 1 1.9516 -0.9463 -6.8014 44 1 1.5491 -1.4813 2.1212 45 1 0.3656 -3.6987 1.7803 46 1 0.9080 -3.7173 0.0178 47 1 3.3328 -3.6743 0.7629 48 1 2.7910 -3.6557 2.5258 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725467835.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:51 Heat of formation + Delta-G solvation = 76.731946 kcal Electronic energy + Delta-G solvation = -30267.330486 eV Core-core repulsion = 26327.348672 eV Total energy + Delta-G solvation = -3939.981814 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.10301 -40.02635 -38.05267 -37.66194 -35.21039 -34.36965 -33.69834 -31.37796 -31.12020 -30.41973 -28.61244 -26.74676 -25.25562 -24.48834 -23.45193 -22.93323 -22.47172 -21.68000 -20.45293 -19.69284 -18.88551 -17.88781 -17.49276 -17.28142 -16.71024 -16.33073 -15.40959 -15.24788 -15.08042 -14.44999 -14.26876 -14.13032 -13.94162 -13.77676 -13.59937 -13.47572 -13.29479 -12.80472 -12.68627 -12.57778 -12.36079 -12.25895 -11.71350 -11.58263 -11.27734 -11.25176 -11.18901 -11.03778 -10.90326 -10.86622 -10.79519 -10.45645 -10.21670 -10.17653 -9.97002 -9.75545 -9.60140 -9.17338 -8.90801 -8.46276 -7.23726 -5.77752 -3.12573 1.12575 1.64864 2.74769 2.95174 3.27613 3.38307 3.43602 3.45729 3.88490 3.94540 4.29940 4.49495 4.55378 4.59808 4.72838 4.78713 4.81709 4.93861 5.00835 5.05954 5.17937 5.19132 5.24216 5.27780 5.47008 5.50355 5.50606 5.55331 5.60182 5.68504 5.69383 5.72682 5.75520 5.79415 5.86485 5.87487 6.03308 6.04097 6.14511 6.19654 6.20658 6.27578 6.34103 6.54763 6.78274 7.43445 7.95046 7.97344 8.21539 8.41290 9.20143 9.93354 10.13182 11.40520 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009586 B = 0.005083 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2920.376608 B = 5507.151017 C = 7286.599409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.579 5.579 3 C 0.596 3.404 4 O -0.525 6.525 5 C -0.007 4.007 6 N -0.330 5.330 7 O 0.119 5.881 8 C -0.041 4.041 9 C -0.152 4.152 10 C -0.046 4.046 11 C -0.126 4.126 12 C -0.117 4.117 13 C -0.034 4.034 14 C 0.158 3.842 15 H 0.106 0.894 16 C 0.148 3.852 17 N -0.752 5.752 18 C -0.242 4.242 19 H 0.091 0.909 20 C 0.009 3.991 21 N -0.932 5.932 22 Si 0.879 3.121 23 H -0.282 1.282 24 H -0.290 1.290 25 H -0.281 1.281 26 C -0.160 4.160 27 C -0.181 4.181 28 C -0.171 4.171 29 H 0.052 0.948 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.041 0.959 41 H 0.036 0.964 42 H 0.361 0.639 43 H 0.259 0.741 44 H 0.104 0.896 45 H 0.091 0.909 46 H 0.108 0.892 47 H 0.099 0.901 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.683 13.101 17.655 22.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.311 5.311 3 C 0.382 3.618 4 O -0.400 6.400 5 C -0.165 4.165 6 N -0.034 5.034 7 O 0.049 5.951 8 C -0.105 4.105 9 C -0.157 4.157 10 C -0.083 4.083 11 C -0.163 4.163 12 C -0.154 4.154 13 C -0.072 4.072 14 C 0.055 3.945 15 H 0.124 0.876 16 C 0.020 3.980 17 N -0.398 5.398 18 C -0.372 4.372 19 H 0.109 0.891 20 C -0.187 4.187 21 N -0.580 5.580 22 Si 0.710 3.290 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.208 1.208 26 C -0.179 4.179 27 C -0.218 4.218 28 C -0.209 4.209 29 H 0.071 0.929 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.114 0.886 39 H 0.110 0.890 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.194 0.806 43 H 0.069 0.931 44 H 0.122 0.878 45 H 0.109 0.891 46 H 0.127 0.873 47 H 0.117 0.883 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.118 12.035 17.606 21.431 hybrid contribution 0.891 1.406 -0.115 1.669 sum -1.227 13.441 17.491 22.093 Atomic orbital electron populations 1.22050 0.78482 1.04634 1.01524 1.47548 1.07772 1.04956 1.70792 1.16924 0.86205 0.81571 0.77121 1.90756 1.12489 1.86319 1.50481 1.22988 0.90169 0.96337 1.06955 1.74710 1.15452 0.95859 1.17414 1.84686 1.32918 1.12116 1.65387 1.24082 0.85130 0.96736 1.04564 1.20642 0.98523 0.90222 1.06325 1.20000 0.89459 0.95987 1.02860 1.21740 0.99879 0.94368 1.00316 1.21681 0.92554 1.00061 1.01146 1.20296 0.99055 0.84030 1.03861 1.21010 0.97825 0.81907 0.93791 0.87596 1.21120 0.98644 0.93423 0.84828 1.42663 1.80199 1.14722 1.02188 1.19028 1.36695 0.99864 0.81623 0.89092 1.24604 1.01335 0.97648 0.95123 1.69688 1.54602 1.36883 0.96865 0.86612 0.79353 0.86382 0.76652 1.20862 1.21674 1.20764 1.22520 1.06039 0.90150 0.99215 1.23214 0.95017 1.00087 1.03494 1.22971 0.95593 1.00081 1.02253 0.92932 0.89448 0.90065 0.89815 0.89285 0.90555 0.91252 0.91004 0.90102 0.88638 0.88985 0.94182 0.94650 0.80566 0.93065 0.87804 0.89083 0.87334 0.88280 0.88927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.20 9.04 59.85 0.54 1.74 16 2 N -0.58 -10.30 2.24 -174.87 -0.39 -10.69 16 3 C 0.60 11.46 7.40 -12.11 -0.09 11.37 16 4 O -0.53 -10.97 15.52 5.38 0.08 -10.89 16 5 C -0.01 -0.12 6.86 -82.82 -0.57 -0.69 16 6 N -0.33 -5.33 8.74 33.29 0.29 -5.04 16 7 O 0.12 1.67 11.18 19.18 0.21 1.88 16 8 C -0.04 -0.50 7.38 -35.38 -0.26 -0.76 16 9 C -0.15 -2.26 6.04 -104.91 -0.63 -2.89 16 10 C -0.05 -0.58 5.65 -27.91 -0.16 -0.74 16 11 C -0.13 -1.14 5.91 -26.39 -0.16 -1.30 16 12 C -0.12 -0.80 5.89 -26.35 -0.16 -0.96 16 13 C -0.03 -0.26 6.31 -27.61 -0.17 -0.44 16 14 C 0.16 2.72 2.55 -67.93 -0.17 2.55 16 15 H 0.11 2.02 6.91 -51.93 -0.36 1.66 16 16 C 0.15 2.93 4.11 -4.04 -0.02 2.91 16 17 N -0.75 -18.89 5.24 -59.91 -0.31 -19.20 16 18 C -0.24 -7.07 10.47 -15.06 -0.16 -7.23 16 19 H 0.09 2.79 8.06 -52.49 -0.42 2.36 16 20 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 21 N -0.93 -29.95 13.97 55.49 0.78 -29.17 16 22 Si 0.88 23.70 27.74 -169.99 -4.71 18.99 16 23 H -0.28 -7.59 7.11 56.52 0.40 -7.18 16 24 H -0.29 -7.78 7.11 56.52 0.40 -7.37 16 25 H -0.28 -7.49 6.52 56.52 0.37 -7.12 16 26 C -0.16 -2.17 5.48 -90.62 -0.50 -2.67 16 27 C -0.18 -2.20 9.50 -26.69 -0.25 -2.45 16 28 C -0.17 -2.04 10.00 -26.69 -0.27 -2.31 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 1.50 5.31 -51.93 -0.28 1.22 16 31 H 0.08 1.27 6.54 -51.93 -0.34 0.93 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.09 1.34 7.94 -51.93 -0.41 0.93 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 36 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 37 H 0.08 0.39 8.14 -51.92 -0.42 -0.04 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.04 0.79 7.59 -51.93 -0.39 0.40 16 41 H 0.04 0.69 5.59 -51.93 -0.29 0.40 16 42 H 0.36 9.38 4.92 -40.82 -0.20 9.18 16 43 H 0.26 7.94 8.31 -40.82 -0.34 7.60 16 44 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 45 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.11 1.45 5.80 -51.93 -0.30 1.15 16 47 H 0.10 1.23 7.98 -51.93 -0.41 0.82 16 48 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 377.91 15.07 5.70 5.70 Total: -1.00 -34.87 377.91 -8.70 -43.58 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -7.23 Total: 8.55 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -3.12 Total: -3.70 kcal Atomic # 7 Polarization: -64.46 SS G_CDS: 0.36 Total: -64.10 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.30 Total: -9.01 kcal Atomic # 14 Polarization: 23.70 SS G_CDS: -4.71 Total: 18.99 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.87 -8.70 -43.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725467835.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.310 kcal (2) G-P(sol) polarization free energy of solvation -34.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds