Wall clock time and date at job start Tue Mar 31 2020 17:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34777 * 120.00046 * 2 1 4 4 O 1.21489 * 119.99939 * 175.82983 * 3 2 1 5 5 C 1.48332 * 120.00005 * 355.83867 * 3 2 1 6 6 N 1.31494 * 127.15515 * 5.88724 * 5 3 2 7 7 O 1.21428 * 111.53086 * 179.97438 * 6 5 3 8 8 C 1.33193 * 111.56354 * 359.96619 * 7 6 5 9 9 C 1.35376 * 106.63665 * 359.79881 * 8 7 6 10 10 C 1.50068 * 124.93867 * 180.02562 * 9 8 7 11 11 C 1.53540 * 108.22849 * 344.10875 * 10 9 8 12 12 C 1.53114 * 109.50542 * 49.20097 * 11 10 9 13 13 C 1.50599 * 129.60201 * 180.18685 * 8 7 6 14 14 C 1.46498 * 119.99977 * 180.02562 * 2 1 3 15 15 H 1.09002 * 109.46970 * 180.02562 * 14 2 1 16 16 C 1.52997 * 109.47256 * 59.99727 * 14 2 1 17 17 N 1.46501 * 109.46880 * 55.00058 * 16 14 2 18 18 C 1.36945 * 119.99941 * 179.97438 * 17 16 14 19 19 H 1.07997 * 119.99639 * 0.02562 * 18 17 16 20 20 C 1.38810 * 120.00073 * 179.97438 * 18 17 16 21 21 N 1.31614 * 120.00169 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00002 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47155 * 89.99464 * 22 20 18 24 24 H 1.48500 * 109.47113 * 210.00208 * 22 20 18 25 25 H 1.48499 * 109.46753 * 329.99622 * 22 20 18 26 26 C 1.52998 * 109.47038 * 299.99534 * 14 2 1 27 27 C 1.53005 * 117.49749 * 116.25419 * 26 14 2 28 28 C 1.53001 * 117.49848 * 184.91265 * 26 14 2 29 29 H 1.09004 * 109.47141 * 275.67019 * 1 2 3 30 30 H 1.08999 * 109.47481 * 35.67017 * 1 2 3 31 31 H 1.09002 * 109.47489 * 155.67129 * 1 2 3 32 32 H 1.09000 * 109.70786 * 103.79173 * 10 9 8 33 33 H 1.08995 * 109.71042 * 224.37944 * 10 9 8 34 34 H 1.08999 * 109.46874 * 169.21028 * 11 10 9 35 35 H 1.09002 * 109.46822 * 289.19490 * 11 10 9 36 36 H 1.09001 * 109.42900 * 50.22130 * 12 11 10 37 37 H 1.09007 * 109.42435 * 170.10869 * 12 11 10 38 38 H 1.08998 * 109.69710 * 282.94085 * 13 8 7 39 39 H 1.09005 * 109.69415 * 43.52505 * 13 8 7 40 40 H 1.08999 * 109.47393 * 174.99641 * 16 14 2 41 41 H 1.09002 * 109.47125 * 295.00043 * 16 14 2 42 42 H 0.97000 * 120.00243 * 359.97438 * 17 16 14 43 43 H 0.96997 * 120.00704 * 180.02562 * 21 20 18 44 44 H 1.08995 * 115.55563 * 330.58704 * 26 14 2 45 45 H 1.08997 * 117.50279 * 215.00531 * 27 26 14 46 46 H 1.08999 * 117.49802 * 0.02562 * 27 26 14 47 47 H 1.09004 * 117.50173 * 359.97438 * 28 26 14 48 48 H 1.09001 * 117.49716 * 145.00512 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3513 1.1686 0.0765 5 6 1.4001 2.4501 -0.0932 6 7 0.0962 2.6190 -0.0737 7 8 -0.2027 3.7921 -0.1684 8 6 0.8770 4.5662 -0.2636 9 6 1.9501 3.7424 -0.2147 10 6 3.3808 4.1894 -0.2883 11 6 3.4073 5.6298 -0.8192 12 6 2.4093 6.4833 -0.0318 13 6 0.9765 6.0633 -0.3929 14 6 2.1975 -1.2687 -0.0006 15 1 3.2691 -1.0695 0.0000 16 6 1.8278 -2.0705 -1.2501 17 7 2.0706 -1.2553 -2.4429 18 6 1.8112 -1.7669 -3.6864 19 1 1.4272 -2.7713 -3.7876 20 6 2.0407 -0.9944 -4.8165 21 7 1.7909 -1.4859 -6.0116 22 14 2.7041 0.7431 -4.6413 23 1 4.1886 0.7109 -4.6656 24 1 2.2084 1.5779 -5.7649 25 1 2.2426 1.3215 -3.3538 26 6 1.8279 -2.0715 1.2484 27 6 1.1140 -3.4091 1.0428 28 6 2.5770 -3.3831 1.4924 29 1 -0.3634 0.1015 1.0227 30 1 -0.3634 0.8348 -0.5992 31 1 -0.3634 -0.9364 -0.4234 32 1 3.8280 4.1554 0.7052 33 1 3.9353 3.5377 -0.9635 34 1 4.4095 6.0419 -0.7018 35 1 3.1346 5.6331 -1.8745 36 1 2.5750 6.3421 1.0363 37 1 2.5519 7.5339 -0.2850 38 1 0.7440 6.3600 -1.4157 39 1 0.2779 6.5387 0.2957 40 1 2.4376 -2.9728 -1.2965 41 1 0.7741 -2.3459 -1.2065 42 1 2.4151 -0.3531 -2.3519 43 1 1.9516 -0.9463 -6.8014 44 1 1.5491 -1.4813 2.1212 45 1 0.3656 -3.6987 1.7803 46 1 0.9080 -3.7173 0.0178 47 1 3.3328 -3.6743 0.7629 48 1 2.7910 -3.6557 2.5258 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725467835.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:50 Heat of formation + Delta-G solvation = 55.556819 kcal Electronic energy + Delta-G solvation = -30268.248709 eV Core-core repulsion = 26327.348672 eV Total energy + Delta-G solvation = -3940.900037 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -46.24944 -41.42932 -39.24534 -38.57722 -36.66741 -36.13971 -34.92424 -33.49432 -32.05642 -31.34380 -30.19639 -28.11433 -26.80394 -25.58942 -24.73746 -23.90560 -23.79389 -23.06122 -21.57936 -20.82892 -20.33107 -19.45272 -19.03318 -18.42883 -18.00382 -17.67156 -16.91878 -16.62402 -16.25370 -15.95022 -15.52795 -15.32333 -15.11984 -14.96408 -14.84983 -14.80801 -14.55523 -14.24585 -14.07225 -13.87721 -13.55444 -13.44906 -13.29367 -13.21026 -12.92655 -12.43998 -12.35794 -12.26787 -12.10724 -11.94432 -11.93951 -11.89746 -11.74136 -11.51861 -11.34136 -11.24276 -11.12805 -10.91565 -10.18414 -9.85429 -9.41971 -8.14893 -5.46398 -0.07101 0.55278 1.19487 1.22331 1.27678 1.51628 1.89084 1.91458 2.32273 2.69585 2.84127 3.16988 3.30086 3.42300 3.57354 3.74847 3.84050 3.90623 3.94905 3.98544 3.99679 4.07113 4.13365 4.18465 4.29658 4.31601 4.41262 4.45101 4.52125 4.61785 4.73177 4.80834 4.83503 4.85677 4.87769 4.95407 4.97315 5.00474 5.10394 5.13920 5.15133 5.27479 5.28118 5.38309 5.38982 5.64237 6.03637 6.09668 6.68571 6.93769 6.94667 7.70269 7.88229 9.06606 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009586 B = 0.005083 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2920.376608 B = 5507.151017 C = 7286.599409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.581 5.581 3 C 0.585 3.415 4 O -0.555 6.555 5 C -0.042 4.042 6 N -0.341 5.341 7 O 0.129 5.871 8 C -0.020 4.020 9 C -0.180 4.180 10 C -0.046 4.046 11 C -0.123 4.123 12 C -0.111 4.111 13 C -0.035 4.035 14 C 0.164 3.836 15 H 0.084 0.916 16 C 0.147 3.853 17 N -0.758 5.758 18 C -0.228 4.228 19 H 0.070 0.930 20 C -0.048 4.048 21 N -0.973 5.973 22 Si 0.940 3.060 23 H -0.281 1.281 24 H -0.284 1.284 25 H -0.283 1.283 26 C -0.167 4.167 27 C -0.171 4.171 28 C -0.162 4.162 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.093 0.907 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.123 0.877 40 H 0.045 0.955 41 H 0.046 0.954 42 H 0.357 0.643 43 H 0.260 0.740 44 H 0.114 0.886 45 H 0.116 0.884 46 H 0.094 0.906 47 H 0.090 0.910 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.447 15.373 19.673 25.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.312 5.312 3 C 0.372 3.628 4 O -0.433 6.433 5 C -0.198 4.198 6 N -0.044 5.044 7 O 0.056 5.944 8 C -0.084 4.084 9 C -0.185 4.185 10 C -0.084 4.084 11 C -0.160 4.160 12 C -0.148 4.148 13 C -0.073 4.073 14 C 0.061 3.939 15 H 0.102 0.898 16 C 0.021 3.979 17 N -0.403 5.403 18 C -0.359 4.359 19 H 0.088 0.912 20 C -0.241 4.241 21 N -0.624 5.624 22 Si 0.770 3.230 23 H -0.208 1.208 24 H -0.210 1.210 25 H -0.209 1.209 26 C -0.186 4.186 27 C -0.208 4.208 28 C -0.199 4.199 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.072 0.928 34 H 0.112 0.888 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.142 0.858 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.189 0.811 43 H 0.069 0.931 44 H 0.132 0.868 45 H 0.134 0.866 46 H 0.112 0.888 47 H 0.108 0.892 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.898 14.270 19.667 24.471 hybrid contribution 1.091 0.643 -0.702 1.448 sum -1.808 14.912 18.965 24.193 Atomic orbital electron populations 1.22090 0.77328 1.03995 1.02847 1.47690 1.08521 1.04781 1.70208 1.17301 0.86167 0.82543 0.76755 1.90717 1.13687 1.86921 1.52003 1.23021 0.91011 0.96581 1.09153 1.74678 1.14874 0.96959 1.17930 1.84650 1.33496 1.11720 1.64536 1.24945 0.83504 0.98458 1.01523 1.20998 1.00132 0.89755 1.07648 1.20035 0.88108 0.97884 1.02354 1.21765 1.01922 0.92218 1.00089 1.21719 0.91004 1.01194 1.00913 1.20694 1.00457 0.80375 1.05760 1.20859 0.96669 0.82032 0.94297 0.89828 1.21312 0.99152 0.93289 0.84152 1.42750 1.80065 1.14994 1.02496 1.19062 1.34717 0.98833 0.83251 0.91193 1.25219 1.02714 1.01155 0.95000 1.69814 1.56638 1.38363 0.97562 0.85642 0.78578 0.82368 0.76427 1.20776 1.21019 1.20940 1.22357 1.08129 0.90534 0.97625 1.23240 0.95869 0.98226 1.03444 1.23078 0.95278 0.98082 1.03509 0.90454 0.90701 0.90087 0.89627 0.92763 0.88842 0.91896 0.90666 0.86778 0.86917 0.85846 0.93730 0.93604 0.81077 0.93121 0.86785 0.86571 0.88802 0.89160 0.86416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.49 9.04 127.77 1.15 3.64 16 2 N -0.58 -20.89 2.24 -825.47 -1.85 -22.75 16 3 C 0.59 23.19 7.40 86.93 0.64 23.83 16 4 O -0.56 -24.31 15.52 -3.68 -0.06 -24.37 16 5 C -0.04 -1.48 6.86 42.55 0.29 -1.18 16 6 N -0.34 -10.92 8.74 -48.95 -0.43 -11.35 16 7 O 0.13 3.42 11.18 78.67 0.88 4.30 16 8 C -0.02 -0.45 7.38 24.99 0.18 -0.26 16 9 C -0.18 -5.30 6.04 -20.05 -0.12 -5.42 16 10 C -0.05 -1.19 5.65 29.83 0.17 -1.02 16 11 C -0.12 -1.99 5.91 30.81 0.18 -1.81 16 12 C -0.11 -1.10 5.89 30.84 0.18 -0.91 16 13 C -0.04 -0.40 6.31 30.02 0.19 -0.21 16 14 C 0.16 5.72 2.55 44.99 0.11 5.84 16 15 H 0.08 3.29 6.91 -2.39 -0.02 3.28 16 16 C 0.15 5.90 4.11 86.38 0.35 6.25 16 17 N -0.76 -38.73 5.24 -343.45 -1.80 -40.53 16 18 C -0.23 -13.56 10.47 84.03 0.88 -12.68 16 19 H 0.07 4.41 8.06 -2.91 -0.02 4.38 16 20 C -0.05 -3.00 5.50 84.86 0.47 -2.53 16 21 N -0.97 -63.77 13.97 21.65 0.30 -63.47 16 22 Si 0.94 50.34 27.74 68.60 1.90 52.24 16 23 H -0.28 -14.90 7.11 99.48 0.71 -14.19 16 24 H -0.28 -14.81 7.11 99.48 0.71 -14.10 16 25 H -0.28 -15.06 6.52 99.48 0.65 -14.41 16 26 C -0.17 -4.32 5.48 -10.79 -0.06 -4.38 16 27 C -0.17 -3.79 9.50 30.62 0.29 -3.50 16 28 C -0.16 -3.56 10.00 30.62 0.31 -3.25 16 29 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 30 H 0.07 2.57 5.31 -2.39 -0.01 2.56 16 31 H 0.08 2.49 6.54 -2.39 -0.02 2.47 16 32 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.05 1.74 7.94 -2.39 -0.02 1.72 16 34 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.06 1.11 8.12 -2.39 -0.02 1.09 16 36 H 0.07 0.74 8.12 -2.39 -0.02 0.72 16 37 H 0.11 0.48 8.14 -2.38 -0.02 0.46 16 38 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.12 0.73 8.14 -2.38 -0.02 0.71 16 40 H 0.04 1.77 7.59 -2.39 -0.02 1.75 16 41 H 0.05 1.78 5.59 -2.39 -0.01 1.76 16 42 H 0.36 18.88 4.92 -92.71 -0.46 18.43 16 43 H 0.26 16.20 8.31 -92.71 -0.77 15.43 16 44 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 45 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.09 2.39 5.80 -2.39 -0.01 2.37 16 47 H 0.09 2.16 7.98 -2.39 -0.02 2.14 16 48 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -78.64 377.91 4.65 -73.99 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: 0.47 Total: 29.54 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 5.23 Total: 2.39 kcal Atomic # 7 Polarization: -134.32 SS G_CDS: -3.78 Total: -138.09 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: 0.82 Total: -20.07 kcal Atomic # 14 Polarization: 50.34 SS G_CDS: 1.90 Total: 52.24 kcal Total: -78.64 4.65 -73.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725467835.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.548 kcal (2) G-P(sol) polarization free energy of solvation -78.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds